Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004843

Physical Location & Seq

Genomic Coordinates Forward (+)

27059214 .. 27059675

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013175

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAAGAAATCAGGTTAGTTTCACAAGGAAAGGAGGGAAGAAAAGCATCGCTGAAGAGTGCGCTCCTCCAATACTTCAGATCACCTGGATTTCACCAGAAAAAGTACAAGAGCAAGAACAATGTACTAATGAAGGCCCATACCATTGCAAGGGTGAACGGTATTAATGTAATCTCCCAATCAACTCAGGAAGACAATAAGGTTGTTAGGATGAACATTATAGTGAGAGACGAAGATCTGGAGCATATTCTGGAATATATAAGGAACACGAACACCACCACCACCAACAACAACAATAATGACAAGAATAATAGTACTGACAATGGTGTAGATGACTACGAAGAAGTATCAGCAACATTATCGATAGAGAAGCGCCTCAATTTGTTGAGAAAAAAGCTTAGGCGCCAGAATACTTGGAGTCCTGCTCTGCAAACTATCCCAGAAGAAATTTCTCCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.63

Weight (kDa)

9.48

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15710 FvH4_2g15711 FvH4_2g15720 FvH4_2g15721
prunus_persica	Prupe.8G169600_v2.0.a1
pyrus_communis	pycom05g12070 pycom10g11060
rosa_laevigata	RLG00000013172 RLG00000013173 RLG00000013174 RLG00000013175
rosa_multiflora	Rmu_sc0002080.1_g000015
rosa_roxburghii	Rroxscaffold_7G00189200 Rroxscaffold_7G00189210
rosa_rugosa	Rorug06G0121000 Rorug06G0121100 Rorug06G0121200.1
rosa_samantha	Rh6AG229900 Rh6AG230000 Rh6AG230200 Rh6AG230300 Rh6BG235000 Rh6BG235100 Rh6BG235200 Rh6CG237000 Rh6CG237100 Rh6CG237300 Rh6DG228800 Rh6DG228900 Rh6DG229000 Rh6DG229100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	402
AcsI	RAATTY	1 cut(s)	447
AcuI	CTGAAG	2 cut(s)	61, 74
AcyI	GRCGYC	1 cut(s)	403
AfaI	GTAC	3 cut(s)	107, 126, 316
AfiI	CCNNNNNNNGG	1 cut(s)	150
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	1 cut(s)	397
AluI	AGCT	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	222
AoxI	GGCC	1 cut(s)	135
ApoI	RAATTY	1 cut(s)	447
AseI	ATTAAT	1 cut(s)	165
AspLEI	GCGC	3 cut(s)	64, 375, 405
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	3 cut(s)	75, 86, 166
BanI	GGYRCC	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	198
BcgI	CGANNNNNNTGC	2 cut(s)	342, 376
BciT130I	CCWGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	222
BfoI	RGCGCY	2 cut(s)	376, 406
BglII	AGATCT	1 cut(s)	235
BmcAI	AGTACT	1 cut(s)	316
Bme1390I	CCNGG	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	404
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	198
BplI	GAGNNNNNCTC	2 cut(s)	409, 441
BpmI	CTGGAG	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	398
Bsa29I	ATCGAT	1 cut(s)	362
BsaHI	GRCGYC	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	87
BseCI	ATCGAT	1 cut(s)	362
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	402
BshVI	ATCGAT	1 cut(s)	362
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	222
BsmBI	CGTCTC	1 cut(s)	222
BsnI	GGCC	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	80, 235
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	199
BspDI	ATCGAT	1 cut(s)	362
BspLI	GGNNCC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	144
BssMI	GATC	2 cut(s)	80, 235
BssNI	GRCGYC	1 cut(s)	403
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	403
BstDEI	CTNAG	2 cut(s)	186, 398
BstF5I	GGATG	1 cut(s)	216
BstH2I	RGCGCY	2 cut(s)	376, 406
BstHHI	GCGC	3 cut(s)	64, 375, 405
BstKTI	GATC	2 cut(s)	83, 238
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	2 cut(s)	80, 235
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
Bsu15I	ATCGAT	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	137
BsuTUI	ATCGAT	1 cut(s)	362
BtgZI	GCGATG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	216
CfoI	GCGC	3 cut(s)	64, 375, 405
Cfr13I	GGNCC	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	362
Csp6I	GTAC	3 cut(s)	106, 125, 315
CviJI	RGCY	2 cut(s)	137, 397
CviKI_1	RGCY	2 cut(s)	137, 397
CviQI	GTAC	3 cut(s)	106, 125, 315
DdeI	CTNAG	2 cut(s)	186, 398
DinI	GGCGCC	1 cut(s)	404
DpnI	GATC	2 cut(s)	82, 237
DpnII	GATC	2 cut(s)	80, 235
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco57I	CTGAAG	2 cut(s)	61, 74
EcoRII	CCWGG	1 cut(s)	85
EgeI	GGCGCC	1 cut(s)	404
EheI	GGCGCC	1 cut(s)	404
Esp3I	CGTCTC	1 cut(s)	222
FaiI	YATR	5 cut(s)	141, 221, 246, 258, 260
FokI	GGATG	1 cut(s)	223
GlaI	GCGC	3 cut(s)	63, 374, 404
GsuI	CTGGAG	1 cut(s)	260
HaeII	RGCGCY	2 cut(s)	376, 406
HaeIII	GGCC	1 cut(s)	137
HhaI	GCGC	3 cut(s)	64, 375, 405
Hin1I	GRCGYC	1 cut(s)	403
Hin6I	GCGC	3 cut(s)	62, 373, 403
HinP1I	GCGC	3 cut(s)	62, 373, 403
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	1 cut(s)	418
HphI	GGTGA	3 cut(s)	75, 86, 166
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	3 cut(s)	188, 239, 251
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	2 cut(s)	149, 430
HpyF3I	CTNAG	2 cut(s)	186, 398
Hsp92I	GRCGYC	1 cut(s)	403
HspAI	GCGC	3 cut(s)	62, 373, 403
KasI	GGCGCC	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	80, 235
LmnI	GCTCC	2 cut(s)	69, 241
LpnPI	CCDG	9 cut(s)	72, 99, 110, 173, 224, 236, 419, 435, 453
LweI	GCATC	1 cut(s)	56
MalI	GATC	2 cut(s)	82, 237
MboI	GATC	2 cut(s)	80, 235
MboII	GAAGA	7 cut(s)	17, 51, 67, 203, 245, 353, 455
MflI	RGATCY	1 cut(s)	235
MluCI	AATT	3 cut(s)	379, 447, 457
Mly113I	GGCGCC	1 cut(s)	403
MlyI	GAGTC	1 cut(s)	427
MnlI	CCTC	3 cut(s)	28, 77, 386
MseI	TTAA	2 cut(s)	165, 460
MslI	CAYNNNNRTG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
NarI	GGCGCC	1 cut(s)	403
NdeII	GATC	2 cut(s)	80, 235
NlaIV	GGNNCC	1 cut(s)	404
PleI	GAGTC	1 cut(s)	426
PluTI	GGCGCC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	426
PshBI	ATTAAT	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	404
PspPI	GGNCC	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	3 cut(s)	107, 126, 316
RsaNI	GTAC	3 cut(s)	106, 125, 315
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	165, 460
Sau3AI	GATC	2 cut(s)	80, 235
Sau96I	GGNCC	1 cut(s)	136
ScaI	AGTACT	1 cut(s)	316
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	4 cut(s)	17, 88, 204, 399
SfaNI	GCATC	1 cut(s)	56
SfoI	GGCGCC	1 cut(s)	404
SmiMI	CAYNNNNRTG	1 cut(s)	221
Sse9I	AATT	3 cut(s)	379, 447, 457
SspDI	GGCGCC	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	362
TasI	AATT	3 cut(s)	379, 447, 457
TatI	WGTACW	3 cut(s)	105, 124, 314
Tru1I	TTAA	2 cut(s)	165, 460
Tru9I	TTAA	2 cut(s)	165, 460
TspDTI	ATGAA	2 cut(s)	146, 227
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	1 cut(s)	447
ZrmI	AGTACT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.