Rh6DG229100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004843
Physical Location & Seq
Reverse (-)
40971049 .. 40972626
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG229100.1

Sequence Viewer

Length: 303 bp
ATGATATTTCATGGTCGACTGACCAGGGGAACGGCACTCTATCTTAATTCTCTCAAAAGGAAAGCAAAGCGGAAGGGCGTCACTAAAGAAAGCATTCTTTCAGCATTTCAGGTCAGCTCGCATTCATCAAAAGAACAAGAGCAGCAGGAACAATCTACTAATGAGGGCCGCCTCTGTTTCAAAGGTGAGCAGCCAGGAGGGTCTCTTAATGTACTTTCCCAGTCGACTCAGGAAGACAATGGGGTGGTGAGGATGAAGATTCTTGTGAAAAGGAAGATTTGGAGCGAGTTTTCGAATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.27

Weight (kDa)

10.08

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 16, 224
AciI CCGC 2 cut(s) 70, 169
AcsI RAATTY 1 cut(s) 295
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 1 cut(s) 213
AgsI TTSAA 1 cut(s) 181
AjnI CCWGG 2 cut(s) 23, 193
AluBI AGCT 1 cut(s) 117
AluI AGCT 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 207
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 142, 190
ApoI RAATTY 1 cut(s) 295
Asp700I GAANNNNTTC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 2 cut(s) 197, 259
AsuII TTCGAA 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 154, 202
BceAI ACGGC 1 cut(s) 48
BciT130I CCWGG 2 cut(s) 25, 195
BcoDI GTCTC 1 cut(s) 207
BisI GCNGC 3 cut(s) 143, 169, 191
BlsI GCNGC 3 cut(s) 144, 170, 192
Bme1390I CCNGG 2 cut(s) 25, 195
BmgT120I GGNCC 1 cut(s) 166
BmrFI CCNGG 2 cut(s) 25, 195
BmrI ACTGGG 1 cut(s) 214
BmuI ACTGGG 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 24
Bse1I ACTGG 1 cut(s) 220
BseBI CCWGG 2 cut(s) 25, 195
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 2 cut(s) 154, 202
BshFI GGCC 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 207
BsmI GAATGC 2 cut(s) 93, 121
BsnI GGCC 1 cut(s) 168
Bso31I GGTCTC 1 cut(s) 207
Bsp119I TTCGAA 1 cut(s) 293
BspACI CCGC 2 cut(s) 70, 169
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 241
BspHI TCATGA 1 cut(s) 299
BspT104I TTCGAA 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 207
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 2 cut(s) 25, 195
BstACI GRCGYC 1 cut(s) 78
BstBI TTCGAA 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 258
BstMAI GTCTC 1 cut(s) 207
BstNI CCWGG 2 cut(s) 25, 195
BstSCI CCNGG 2 cut(s) 23, 193
BstV1I GCAGC 2 cut(s) 154, 202
BstV2I GAAGAC 1 cut(s) 240
BsuRI GGCC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 119
CciI TCATGA 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 166
CseI GACGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 212
CviAII CATG 2 cut(s) 11, 300
CviJI RGCY 3 cut(s) 117, 168, 193
CviKI_1 RGCY 3 cut(s) 117, 168, 193
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 207
EcoRI GAATTC 1 cut(s) 295
EcoRII CCWGG 2 cut(s) 23, 193
FaeI CATG 2 cut(s) 14, 303
FaiI YATR 2 cut(s) 12, 301
FatI CATG 2 cut(s) 10, 299
FblI GTMKAC 2 cut(s) 16, 224
Fnu4HI GCNGC 3 cut(s) 143, 169, 191
FokI GGATG 1 cut(s) 265
Fsp4HI GCNGC 3 cut(s) 143, 169, 191
GluI GCNGC 3 cut(s) 143, 169, 191
HaeIII GGCC 1 cut(s) 168
HgaI GACGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 14, 303
HincII GTYRAC 2 cut(s) 17, 225
HindII GTYRAC 2 cut(s) 17, 225
HinfI GANTC 2 cut(s) 226, 259
HphI GGTGA 2 cut(s) 197, 259
Hpy166II GTNNAC 2 cut(s) 17, 225
Hpy188III TCNNGA 2 cut(s) 230, 300
Hpy8I GTNNAC 2 cut(s) 17, 225
HpyAV CCTTC 1 cut(s) 67
HpyF3I CTNAG 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 14, 303
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 8 cut(s) 10, 37, 95, 131, 180, 207, 215, 233
Lsp1109I GCAGC 2 cut(s) 154, 202
MaeIII GTNAC 1 cut(s) 79
MboII GAAGA 3 cut(s) 245, 268, 286
MluCI AATT 2 cut(s) 46, 295
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 4 cut(s) 157, 182, 191, 243
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 2 cut(s) 45, 207
MspR9I CCNGG 2 cut(s) 25, 195
Mva1269I GAATGC 2 cut(s) 93, 121
MvaI CCWGG 2 cut(s) 25, 195
NlaIII CATG 2 cut(s) 14, 303
NmuCI GTSAC 1 cut(s) 79
NspV TTCGAA 1 cut(s) 293
PagI TCATGA 1 cut(s) 299
PctI GAATGC 2 cut(s) 93, 121
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 3 cut(s) 144, 170, 192
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Psp6I CCWGG 2 cut(s) 23, 193
PspGI CCWGG 2 cut(s) 23, 193
PspPI GGNCC 1 cut(s) 166
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SalI GTCGAC 2 cut(s) 15, 223
SaqAI TTAA 2 cut(s) 45, 207
SatI GCNGC 3 cut(s) 143, 169, 191
Sau96I GGNCC 1 cut(s) 166
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 2 cut(s) 25, 195
SetI ASST 3 cut(s) 114, 119, 187
SfuI TTCGAA 1 cut(s) 293
Sse9I AATT 2 cut(s) 46, 295
SsiI CCGC 2 cut(s) 70, 169
StyD4I CCNGG 2 cut(s) 23, 193
TaqI TCGA 3 cut(s) 16, 224, 293
TasI AATT 2 cut(s) 46, 295
TatI WGTACW 1 cut(s) 211
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 2 cut(s) 45, 207
Tru9I TTAA 2 cut(s) 45, 207
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 2 cut(s) 142, 190
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 3 cut(s) 114, 269, 288
XapI RAATTY 1 cut(s) 295
XmiI GTMKAC 2 cut(s) 16, 224
XmnI GAANNNNTTC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.