Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004843

Physical Location & Seq

Genomic Coordinates Reverse (-)

41447609 .. 41448149

Gene Structure 541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG230200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAAGGCATCAACTCATCATCATCTGCAGAAGGAAAGCAAAGCCGAAAGGCAATGCTAAAGAAAGCACTCTTTCATCATTTCAGATCAGCTCGGGTTCATCACAAGAACAGAAGCAGCAGGATCAGCAATCTACTATCGAAGGCCACAGCCATTGCAAGGGCGAGCGGCCAGGAGGGTATCAATGCACTTTCCCAGTTGACTCAGGAAAACAATGGGGTGGTGAGGATGAAGATTCTGGTGAGAAAGGAAGATTTGGAGCAAGTTTTGGAACTGATGAGAAATAACAACAACAATAATAACACTACTAACCACAATAACACGGACAATTTTACTGATGAGGACGAAGAAAAAGCATCATTGATGATTGAGGAGCGCCTAAATCTCTTGCGGAAAAAGCATAGGCGCCACAATTCTTGGAGTCCTGCAGTTCAAACCATCCCGGAAGAAATTTTAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.45

Weight (kDa)

9.9

Isoelectric Point (pI)

56.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15710 FvH4_2g15711 FvH4_2g15720 FvH4_2g15721
prunus_persica	Prupe.8G169600_v2.0.a1
pyrus_communis	pycom05g12070 pycom10g11060
rosa_laevigata	RLG00000013172 RLG00000013173 RLG00000013174 RLG00000013175
rosa_multiflora	Rmu_sc0002080.1_g000015
rosa_roxburghii	Rroxscaffold_7G00189200 Rroxscaffold_7G00189210
rosa_rugosa	Rorug06G0121000 Rorug06G0121100 Rorug06G0121200.1
rosa_samantha	Rh6AG229900 Rh6AG230000 Rh6AG230200 Rh6AG230300 Rh6BG235000 Rh6BG235100 Rh6BG235200 Rh6CG237000 Rh6CG237100 Rh6CG237300 Rh6DG228800 Rh6DG228900 Rh6DG229000 Rh6DG229100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	405
AccBSI	CCGCTC	1 cut(s)	168
AciI	CCGC	2 cut(s)	168, 391
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	450
AcyI	GRCGYC	1 cut(s)	406
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
AlwI	GGATC	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	2 cut(s)	144, 169
ApeKI	GCWGC	1 cut(s)	117
ApoI	RAATTY	1 cut(s)	450
AspLEI	GCGC	2 cut(s)	378, 408
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	2 cut(s)	235, 253
AvaI	CYCGRG	1 cut(s)	93
BanI	GGYRCC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	1 cut(s)	446
BciT130I	CCWGG	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	443
BfaI	CTAG	1 cut(s)	460
BfmI	CTRYAG	2 cut(s)	27, 426
BfoI	RGCGCY	2 cut(s)	379, 409
BisI	GCNGC	2 cut(s)	118, 169
BlsI	GCNGC	2 cut(s)	119, 170
Bme1390I	CCNGG	2 cut(s)	173, 443
BmeT110I	CYCGRG	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	407
BmrFI	CCNGG	2 cut(s)	173, 443
BmrI	ACTGGG	1 cut(s)	190
BmsI	GCATC	2 cut(s)	18, 365
BmuI	ACTGGG	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	443
BsaHI	GRCGYC	1 cut(s)	406
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	196
Bse3DI	GCAATG	2 cut(s)	60, 153
BseBI	CCWGG	1 cut(s)	173
BseGI	GGATG	2 cut(s)	234, 438
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMI	GCAATG	2 cut(s)	60, 153
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	1 cut(s)	129
BshFI	GGCC	2 cut(s)	146, 171
BshNI	GGYRCC	1 cut(s)	405
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	443
BslI	CCNNNNNNNGG	1 cut(s)	159
BsnI	GGCC	2 cut(s)	146, 171
BsoBI	CYCGRG	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	86, 123
BspACI	CCGC	2 cut(s)	168, 391
BspANI	GGCC	2 cut(s)	146, 171
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	407
BspMAI	CTGCAG	2 cut(s)	31, 430
BspPI	GGATC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	405
BsrBI	CCGCTC	1 cut(s)	168
BsrDI	GCAATG	2 cut(s)	60, 153
BsrI	ACTGG	1 cut(s)	196
BssMI	GATC	2 cut(s)	86, 123
BssNI	GRCGYC	1 cut(s)	406
Bst2UI	CCWGG	1 cut(s)	173
BstACI	GRCGYC	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	234, 438
BstH2I	RGCGCY	2 cut(s)	379, 409
BstHHI	GCGC	2 cut(s)	378, 408
BstKTI	GATC	2 cut(s)	89, 126
BstMBI	GATC	2 cut(s)	86, 123
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 397
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	171, 441
BstSFI	CTRYAG	2 cut(s)	27, 426
BstV1I	GCAGC	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	146, 171
BtsCI	GGATG	2 cut(s)	234, 438
Cac8I	GCNNGC	1 cut(s)	166
CfoI	GCGC	2 cut(s)	378, 408
CspCI	CAANNNNNGTGG	4 cut(s)	136, 171, 398, 433
CviJI	RGCY	6 cut(s)	45, 92, 146, 152, 171, 458
CviKI_1	RGCY	6 cut(s)	45, 92, 146, 152, 171, 458
DdeI	CTNAG	1 cut(s)	204
DinI	GGCGCC	1 cut(s)	407
DpnI	GATC	2 cut(s)	88, 125
DpnII	GATC	2 cut(s)	86, 123
EaeI	YGGCCR	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	171
EgeI	GGCGCC	1 cut(s)	407
EheI	GGCGCC	1 cut(s)	407
FaiI	YATR	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	118, 169
FokI	GGATG	2 cut(s)	241, 425
Fsp4HI	GCNGC	2 cut(s)	118, 169
FspBI	CTAG	1 cut(s)	460
GlaI	GCGC	2 cut(s)	377, 407
GluI	GCNGC	2 cut(s)	118, 169
HaeII	RGCGCY	2 cut(s)	379, 409
HaeIII	GGCC	2 cut(s)	146, 171
HapII	CCGG	1 cut(s)	443
HhaI	GCGC	2 cut(s)	378, 408
Hin1I	GRCGYC	1 cut(s)	406
Hin6I	GCGC	2 cut(s)	376, 406
HinP1I	GCGC	2 cut(s)	376, 406
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	3 cut(s)	202, 235, 421
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	2 cut(s)	235, 253
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	1 cut(s)	201
HpyAV	CCTTC	2 cut(s)	26, 136
HpyCH4V	TGCA	4 cut(s)	29, 158, 188, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 397
HpyF3I	CTNAG	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	406
HspAI	GCGC	2 cut(s)	376, 406
KasI	GGCGCC	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	86, 123
LmnI	GCTCC	2 cut(s)	259, 373
LpnPI	CCDG	8 cut(s)	106, 158, 185, 191, 209, 224, 438, 456
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	2 cut(s)	18, 365
MaeI	CTAG	1 cut(s)	460
MalI	GATC	2 cut(s)	88, 125
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	2 cut(s)	86, 123
MboII	GAAGA	4 cut(s)	244, 263, 359, 458
MluCI	AATT	3 cut(s)	328, 412, 450
Mly113I	GGCGCC	1 cut(s)	406
MlyI	GAGTC	2 cut(s)	196, 430
MnlI	CCTC	4 cut(s)	169, 219, 334, 364
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	173, 443
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	126, 397
NarI	GGCGCC	1 cut(s)	406
NciI	CCSGG	1 cut(s)	443
NdeII	GATC	2 cut(s)	86, 123
NlaIV	GGNNCC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	235
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	119, 170
PleI	GAGTC	2 cut(s)	196, 429
PluTI	GGCGCC	1 cut(s)	409
PpsI	GAGTC	2 cut(s)	196, 429
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	407
PstI	CTGCAG	2 cut(s)	31, 430
SatI	GCNGC	2 cut(s)	118, 169
Sau3AI	GATC	2 cut(s)	86, 123
SchI	GAGTC	2 cut(s)	196, 430
ScrFI	CCNGG	2 cut(s)	173, 443
SetI	ASST	1 cut(s)	94
SfaNI	GCATC	2 cut(s)	18, 365
SfcI	CTRYAG	2 cut(s)	27, 426
SfoI	GGCGCC	1 cut(s)	407
Sse9I	AATT	3 cut(s)	328, 412, 450
SsiI	CCGC	2 cut(s)	168, 391
SspDI	GGCGCC	1 cut(s)	405
SspMI	CTAG	1 cut(s)	460
StyD4I	CCNGG	2 cut(s)	171, 441
TaqI	TCGA	1 cut(s)	140
TasI	AATT	3 cut(s)	328, 412, 450
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	117
TspDTI	ATGAA	3 cut(s)	65, 89, 245
TspGWI	ACGGA	1 cut(s)	338
XapI	RAATTY	1 cut(s)	450
XspI	CTAG	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.