Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004843

Physical Location & Seq

Genomic Coordinates Forward (+)

28939020 .. 28939466

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00189200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAAGTGATCAAATCATCATCACTATCCGTAGAAGGAAAGAAAAGCGGAAGGCCGTCACTAAAGAAAGCATTCTGTCAGCATTTCAGGTCAGCTCGCATTCATCAAAAGAACAAGAGCAGCAGGAACAAACTACTAATGAGGGCCGCCTCTGTTTCAAAGGAGAGCAGCCAAGAGGGTCTTAATGTACTTTCCCAGTCGACTCGGGAAGACAATGGGGTGGTGAGGATGAAGATTCTTGTGAAAAAGGAAGATTTGGAGCGAGTTTTTGAATTCATGAGGAATATTAGCAATACTAACCACAAAAACGATGACAATGGTGCTGATGAGGAGGATGAAGAAGCATTTTTGTCGATAGAGGAGCGCCTAAATCAGTTGCGGAAAAAGCATATAGGCGCCATAATTCTTGGAGTCCTGTTCTGCAAACCATCCCTGAAGACATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

148

Amino Acids

16.85

Weight (kDa)

9.66

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15710 FvH4_2g15711 FvH4_2g15720 FvH4_2g15721
prunus_persica	Prupe.8G169600_v2.0.a1
pyrus_communis	pycom05g12070 pycom10g11060
rosa_laevigata	RLG00000013172 RLG00000013173 RLG00000013174 RLG00000013175
rosa_multiflora	Rmu_sc0002080.1_g000015
rosa_roxburghii	Rroxscaffold_7G00189200 Rroxscaffold_7G00189210
rosa_rugosa	Rorug06G0121000 Rorug06G0121100 Rorug06G0121200.1
rosa_samantha	Rh6AG229900 Rh6AG230000 Rh6AG230200 Rh6AG230300 Rh6BG235000 Rh6BG235100 Rh6BG235200 Rh6CG237000 Rh6CG237100 Rh6CG237300 Rh6DG228800 Rh6DG228900 Rh6DG229000 Rh6DG229100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	200
AciI	CCGC	3 cut(s)	48, 147, 379
AcsI	RAATTY	1 cut(s)	272
AcyI	GRCGYC	1 cut(s)	396
AfaI	GTAC	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	159, 272
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	204
AoxI	GGCC	2 cut(s)	53, 144
ApeKI	GCWGC	2 cut(s)	120, 168
ApoI	RAATTY	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	2 cut(s)	366, 398
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	235
AvaI	CYCGRG	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	395
BbsI	GAAGAC	2 cut(s)	216, 443
BbvI	GCAGC	2 cut(s)	132, 180
BccI	CCATC	1 cut(s)	436
BceAI	ACGGC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	333, 367
BclI	TGATCA	1 cut(s)	9
BfoI	RGCGCY	2 cut(s)	367, 399
BisI	GCNGC	3 cut(s)	121, 147, 169
BlsI	GCNGC	3 cut(s)	122, 148, 170
BmeT110I	CYCGRG	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	397
BmrI	ACTGGG	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	190
BpiI	GAAGAC	2 cut(s)	216, 443
BsaHI	GRCGYC	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	196
BseGI	GGATG	3 cut(s)	234, 340, 428
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	2 cut(s)	344, 374
BseXI	GCAGC	2 cut(s)	132, 180
BshFI	GGCC	2 cut(s)	55, 146
BshNI	GGYRCC	1 cut(s)	395
BsiHKCI	CYCGRG	1 cut(s)	204
BsmI	GAATGC	2 cut(s)	71, 99
BsnI	GGCC	2 cut(s)	55, 146
BsoBI	CYCGRG	1 cut(s)	204
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	3 cut(s)	48, 147, 379
BspANI	GGCC	2 cut(s)	55, 146
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	397
BspT107I	GGYRCC	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	196
BssMI	GATC	1 cut(s)	9
BssNI	GRCGYC	1 cut(s)	396
BstACI	GRCGYC	1 cut(s)	396
BstC8I	GCNNGC	1 cut(s)	97
BstF5I	GGATG	3 cut(s)	234, 340, 428
BstH2I	RGCGCY	2 cut(s)	367, 399
BstHHI	GCGC	2 cut(s)	366, 398
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstV1I	GCAGC	2 cut(s)	132, 180
BstV2I	GAAGAC	2 cut(s)	216, 443
BsuRI	GGCC	2 cut(s)	55, 146
BtsCI	GGATG	3 cut(s)	234, 340, 428
Cac8I	GCNNGC	1 cut(s)	97
CciI	TCATGA	1 cut(s)	276
CfoI	GCGC	2 cut(s)	366, 398
Cfr13I	GGNCC	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	4 cut(s)	55, 95, 146, 171
CviKI_1	RGCY	4 cut(s)	55, 95, 146, 171
CviQI	GTAC	1 cut(s)	188
DinI	GGCGCC	1 cut(s)	397
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	272
EgeI	GGCGCC	1 cut(s)	397
EheI	GGCGCC	1 cut(s)	397
FaeI	CATG	1 cut(s)	280
FaiI	YATR	4 cut(s)	278, 390, 392, 401
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FatI	CATG	1 cut(s)	276
FbaI	TGATCA	1 cut(s)	9
FblI	GTMKAC	1 cut(s)	200
Fnu4HI	GCNGC	3 cut(s)	121, 147, 169
FokI	GGATG	3 cut(s)	241, 347, 415
Fsp4HI	GCNGC	3 cut(s)	121, 147, 169
GlaI	GCGC	2 cut(s)	365, 397
GluI	GCNGC	3 cut(s)	121, 147, 169
HaeII	RGCGCY	2 cut(s)	367, 399
HaeIII	GGCC	2 cut(s)	55, 146
HhaI	GCGC	2 cut(s)	366, 398
Hin1I	GRCGYC	1 cut(s)	396
Hin1II	CATG	1 cut(s)	280
Hin6I	GCGC	2 cut(s)	364, 396
HinP1I	GCGC	2 cut(s)	364, 396
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	3 cut(s)	202, 235, 411
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188III	TCNNGA	2 cut(s)	206, 277
Hpy8I	GTNNAC	1 cut(s)	201
HpyAV	CCTTC	2 cut(s)	29, 45
HpyCH4V	TGCA	1 cut(s)	423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
Hsp92I	GRCGYC	1 cut(s)	396
Hsp92II	CATG	1 cut(s)	280
HspAI	GCGC	2 cut(s)	364, 396
KasI	GGCGCC	1 cut(s)	395
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	2 cut(s)	259, 361
LpnPI	CCDG	4 cut(s)	73, 109, 209, 428
Lsp1109I	GCAGC	2 cut(s)	132, 180
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	4 cut(s)	221, 244, 263, 350
MluCI	AATT	2 cut(s)	272, 402
Mly113I	GGCGCC	1 cut(s)	396
MlyI	GAGTC	2 cut(s)	196, 420
MnlI	CCTC	8 cut(s)	135, 160, 169, 219, 273, 322, 325, 352
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	1 cut(s)	183
Mva1269I	GAATGC	2 cut(s)	71, 99
MwoI	GCNNNNNNNGC	1 cut(s)	385
NarI	GGCGCC	1 cut(s)	396
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	57
PagI	TCATGA	1 cut(s)	276
PctI	GAATGC	2 cut(s)	71, 99
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	122, 148, 170
PleI	GAGTC	2 cut(s)	196, 419
PluTI	GGCGCC	1 cut(s)	399
PpsI	GAGTC	2 cut(s)	196, 419
PspN4I	GGNNCC	1 cut(s)	397
PspPI	GGNCC	1 cut(s)	144
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SalI	GTCGAC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	3 cut(s)	121, 147, 169
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	144
SchI	GAGTC	2 cut(s)	196, 420
SetI	ASST	2 cut(s)	92, 97
SfoI	GGCGCC	1 cut(s)	397
Sse9I	AATT	2 cut(s)	272, 402
SsiI	CCGC	3 cut(s)	48, 147, 379
SspDI	GGCGCC	1 cut(s)	395
SspI	AATATT	1 cut(s)	286
TaqI	TCGA	2 cut(s)	200, 353
TasI	AATT	2 cut(s)	272, 402
TatI	WGTACW	1 cut(s)	187
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	2 cut(s)	120, 168
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	4 cut(s)	92, 245, 265, 351
TspGWI	ACGGA	1 cut(s)	19
XapI	RAATTY	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	200
XmnI	GAANNNNTTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.