Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004843

Physical Location & Seq

Genomic Coordinates Reverse (-)

41429364 .. 41430580

Gene Structure 1217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG229900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAAGAAATCAGGTTAGTTTCACAAGGAAAGGAGGGAAGAAAAGCATCGATGAAGAGTGCACTCCTCCGATACTTCAGATCTCCTGGATTTCACCAGAAAAACAAGAGCAAGAACAATGTACTAATGAAGGTCCATACCATTGCAAGGGTGAACGGTATTAATGTAATTTCCCAATCAACTCAGGAAGACAATGAGATTGTTAGGATGAACATTTTAGTGAGAGAAGAAGATCTGGAGCATATTCTGGAACATATAAGGAACACGAACACGAACACCACCAACAACAACAATAATGACAAGAATAATAGTACTGACATTAATGGTGTAGATGACTACGAAGAAGTATCAGCAACATTATCGATAGAGGAGCGCCTAAATTTGTTGAGAAAAAAGCTTAGGCGCCAGAATACTTGGAGTCCTGCTCTGCAAACTATCCCAGAAGAAATTTCGCCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.65

Weight (kDa)

8.02

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15710 FvH4_2g15711 FvH4_2g15720 FvH4_2g15721
prunus_persica	Prupe.8G169600_v2.0.a1
pyrus_communis	pycom05g12070 pycom10g11060
rosa_laevigata	RLG00000013172 RLG00000013173 RLG00000013174 RLG00000013175
rosa_multiflora	Rmu_sc0002080.1_g000015
rosa_roxburghii	Rroxscaffold_7G00189200 Rroxscaffold_7G00189210
rosa_rugosa	Rorug06G0121000 Rorug06G0121100 Rorug06G0121200.1
rosa_samantha	Rh6AG229900 Rh6AG230000 Rh6AG230200 Rh6AG230300 Rh6BG235000 Rh6BG235100 Rh6BG235200 Rh6CG237000 Rh6CG237100 Rh6CG237300 Rh6DG228800 Rh6DG228900 Rh6DG229000 Rh6DG229100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	402
AcsI	RAATTY	2 cut(s)	379, 447
AcuI	CTGAAG	1 cut(s)	61
AcyI	GRCGYC	1 cut(s)	403
AfaI	GTAC	2 cut(s)	123, 313
AfiI	CCNNNNNNNGG	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	1 cut(s)	397
AluI	AGCT	1 cut(s)	397
Alw21I	GWGCWC	1 cut(s)	64
Alw44I	GTGCAC	1 cut(s)	60
ApaLI	GTGCAC	1 cut(s)	60
ApoI	RAATTY	2 cut(s)	379, 447
AseI	ATTAAT	2 cut(s)	162, 321
AspLEI	GCGC	2 cut(s)	375, 405
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	86, 163
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	64
BcgI	CGANNNNNNTGC	2 cut(s)	342, 376
BciT130I	CCWGG	1 cut(s)	87
BfoI	RGCGCY	2 cut(s)	376, 406
BglII	AGATCT	2 cut(s)	80, 232
BmcAI	AGTACT	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	404
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	409, 441
BpmI	CTGGAG	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	398
Bsa29I	ATCGAT	2 cut(s)	50, 362
BsaHI	GRCGYC	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	87
BseCI	ATCGAT	2 cut(s)	50, 362
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	197
BseRI	GAGGAG	2 cut(s)	56, 383
BseSI	GKGCMC	1 cut(s)	64
BshNI	GGYRCC	1 cut(s)	402
BshVI	ATCGAT	2 cut(s)	50, 362
BsiHKAI	GWGCWC	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	80, 232
BspCNI	CTCAG	1 cut(s)	196
BspDI	ATCGAT	2 cut(s)	50, 362
BspLI	GGNNCC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	141
BssMI	GATC	2 cut(s)	80, 232
BssNI	GRCGYC	1 cut(s)	403
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	403
BstDEI	CTNAG	2 cut(s)	183, 398
BstF5I	GGATG	1 cut(s)	213
BstH2I	RGCGCY	2 cut(s)	376, 406
BstHHI	GCGC	2 cut(s)	375, 405
BstKTI	GATC	2 cut(s)	83, 235
BstMBI	GATC	2 cut(s)	80, 232
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	2 cut(s)	80, 232
BstYI	RGATCY	2 cut(s)	80, 232
Bsu15I	ATCGAT	2 cut(s)	50, 362
BsuTUI	ATCGAT	2 cut(s)	50, 362
BtsCI	GGATG	1 cut(s)	213
CfoI	GCGC	2 cut(s)	375, 405
Cfr13I	GGNCC	1 cut(s)	133
ClaI	ATCGAT	2 cut(s)	50, 362
Csp6I	GTAC	2 cut(s)	122, 312
CviJI	RGCY	1 cut(s)	397
CviKI_1	RGCY	1 cut(s)	397
CviQI	GTAC	2 cut(s)	122, 312
DdeI	CTNAG	2 cut(s)	183, 398
DinI	GGCGCC	1 cut(s)	404
DpnI	GATC	2 cut(s)	82, 234
DpnII	GATC	2 cut(s)	80, 232
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	85
EgeI	GGCGCC	1 cut(s)	404
EheI	GGCGCC	1 cut(s)	404
FaiI	YATR	4 cut(s)	138, 243, 255, 257
FokI	GGATG	1 cut(s)	220
GlaI	GCGC	2 cut(s)	374, 404
GsuI	CTGGAG	1 cut(s)	257
HaeII	RGCGCY	2 cut(s)	376, 406
HhaI	GCGC	2 cut(s)	375, 405
Hin1I	GRCGYC	1 cut(s)	403
Hin6I	GCGC	2 cut(s)	373, 403
HinP1I	GCGC	2 cut(s)	373, 403
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	1 cut(s)	418
HphI	GGTGA	2 cut(s)	86, 163
Hpy166II	GTNNAC	2 cut(s)	62, 154
Hpy188I	TCNGA	2 cut(s)	71, 80
Hpy188III	TCNNGA	3 cut(s)	185, 236, 248
Hpy8I	GTNNAC	2 cut(s)	62, 154
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	3 cut(s)	62, 146, 430
HpyF3I	CTNAG	2 cut(s)	183, 398
Hsp92I	GRCGYC	1 cut(s)	403
HspAI	GCGC	2 cut(s)	373, 403
KasI	GGCGCC	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	80, 232
LmnI	GCTCC	2 cut(s)	238, 370
LpnPI	CCDG	9 cut(s)	72, 99, 110, 170, 221, 233, 419, 435, 453
LweI	GCATC	1 cut(s)	56
MalI	GATC	2 cut(s)	82, 234
MboI	GATC	2 cut(s)	80, 232
MboII	GAAGA	8 cut(s)	17, 51, 67, 200, 239, 242, 353, 455
MflI	RGATCY	2 cut(s)	80, 232
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	4 cut(s)	168, 379, 447, 457
Mly113I	GGCGCC	1 cut(s)	403
MlyI	GAGTC	1 cut(s)	427
MnlI	CCTC	3 cut(s)	28, 77, 361
MseI	TTAA	3 cut(s)	162, 321, 460
MslI	CAYNNNNRTG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
NarI	GGCGCC	1 cut(s)	403
NdeII	GATC	2 cut(s)	80, 232
NlaIV	GGNNCC	1 cut(s)	404
PfoI	TCCNGGA	1 cut(s)	85
PleI	GAGTC	1 cut(s)	426
PluTI	GGCGCC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	426
PshBI	ATTAAT	2 cut(s)	162, 321
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	404
PspPI	GGNCC	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	80, 232
RsaI	GTAC	2 cut(s)	123, 313
RsaNI	GTAC	2 cut(s)	122, 312
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	162, 321, 460
Sau3AI	GATC	2 cut(s)	80, 232
Sau96I	GGNCC	1 cut(s)	133
ScaI	AGTACT	1 cut(s)	313
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	3 cut(s)	17, 135, 399
SfaNI	GCATC	1 cut(s)	56
SfoI	GGCGCC	1 cut(s)	404
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	4 cut(s)	168, 379, 447, 457
SspDI	GGCGCC	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	2 cut(s)	50, 362
TasI	AATT	4 cut(s)	168, 379, 447, 457
TatI	WGTACW	2 cut(s)	121, 311
Tru1I	TTAA	3 cut(s)	162, 321, 460
Tru9I	TTAA	3 cut(s)	162, 321, 460
TspDTI	ATGAA	3 cut(s)	68, 143, 224
VneI	GTGCAC	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	133
VspI	ATTAAT	2 cut(s)	162, 321
XapI	RAATTY	2 cut(s)	379, 447
ZrmI	AGTACT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.