Rh6BG235200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0004843
Physical Location & Seq
Reverse (-)
44173507 .. 44173887
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG235200.1

Sequence Viewer

Length: 282 bp
ATGGAAGTGATCAAATCATCATCACTATCTGTAGAAGGAAAGCAAAGCGGAAGGGTGTCACTAAAGAAAGCATTCTTTCAGCATTTCAGGTCAGCTCGCATTCATCAAAAGAACAAGAGCAGCAGGAACAATCTACTAATGAGGGCCGCCTCTGTTTCAAAGGTGAGCAGCCAGCTGGAGGGTCTTAATGTACTTTCCCAGTCGACTCAGGAAGACAATGGGGTGGTGAGGATGAAGATTCTTGTGAAAAGGAAGATTTGGAGCGAGTTTTCGAATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.48

Weight (kDa)

11.09

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 203
AciI CCGC 2 cut(s) 48, 147
AcsI RAATTY 1 cut(s) 274
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 1 cut(s) 159
AluBI AGCT 2 cut(s) 95, 175
AluI AGCT 2 cut(s) 95, 175
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 120, 168
ApoI RAATTY 1 cut(s) 274
Asp700I GAANNNNTTC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 175, 238
AsuII TTCGAA 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 132, 180
BclI TGATCA 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 3 cut(s) 121, 147, 169
BlsI GCNGC 3 cut(s) 122, 148, 170
BmgT120I GGNCC 1 cut(s) 144
BmrI ACTGGG 1 cut(s) 193
BmuI ACTGGG 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 219
BpmI CTGGAG 1 cut(s) 197
Bpu14I TTCGAA 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 199
BseXI GCAGC 2 cut(s) 132, 180
BshFI GGCC 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 178
BsmI GAATGC 2 cut(s) 71, 99
BsnI GGCC 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 272
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 2 cut(s) 48, 147
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 220
BspHI TCATGA 1 cut(s) 278
BspT104I TTCGAA 1 cut(s) 272
BsrI ACTGG 1 cut(s) 199
BssMI GATC 1 cut(s) 9
BstBI TTCGAA 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 97, 173
BstDEI CTNAG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 237
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 132, 180
BstV2I GAAGAC 1 cut(s) 219
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 97, 173
CciI TCATGA 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 144
Csp6I GTAC 1 cut(s) 191
CviAII CATG 1 cut(s) 279
CviJI RGCY 4 cut(s) 95, 146, 171, 175
CviKI_1 RGCY 4 cut(s) 95, 146, 171, 175
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 207
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 274
FaeI CATG 1 cut(s) 282
FaiI YATR 1 cut(s) 280
FatI CATG 1 cut(s) 278
FbaI TGATCA 1 cut(s) 9
FblI GTMKAC 1 cut(s) 203
Fnu4HI GCNGC 3 cut(s) 121, 147, 169
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 3 cut(s) 121, 147, 169
GluI GCNGC 3 cut(s) 121, 147, 169
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 146
Hin1II CATG 1 cut(s) 282
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 2 cut(s) 205, 238
HphI GGTGA 2 cut(s) 175, 238
Hpy166II GTNNAC 1 cut(s) 204
Hpy188III TCNNGA 2 cut(s) 209, 279
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 2 cut(s) 29, 45
HpyF3I CTNAG 1 cut(s) 207
Hsp92II CATG 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 261
LpnPI CCDG 6 cut(s) 73, 109, 161, 185, 194, 212
Lsp1109I GCAGC 2 cut(s) 132, 180
MaeIII GTNAC 1 cut(s) 57
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 3 cut(s) 224, 247, 265
MluCI AATT 1 cut(s) 274
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 4 cut(s) 135, 160, 172, 222
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 175
Mva1269I GAATGC 2 cut(s) 71, 99
NdeII GATC 1 cut(s) 9
NlaIII CATG 1 cut(s) 282
NmuCI GTSAC 1 cut(s) 57
NspV TTCGAA 1 cut(s) 272
PagI TCATGA 1 cut(s) 278
PctI GAATGC 2 cut(s) 71, 99
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 3 cut(s) 122, 148, 170
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 144
PvuII CAGCTG 1 cut(s) 175
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SalI GTCGAC 1 cut(s) 202
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 3 cut(s) 121, 147, 169
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 1 cut(s) 144
SchI GAGTC 1 cut(s) 199
SetI ASST 4 cut(s) 92, 97, 165, 177
SfcI CTRYAG 1 cut(s) 30
SfuI TTCGAA 1 cut(s) 272
Sse9I AATT 1 cut(s) 274
SsiI CCGC 2 cut(s) 48, 147
TaqI TCGA 2 cut(s) 203, 272
TasI AATT 1 cut(s) 274
TatI WGTACW 1 cut(s) 190
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 2 cut(s) 120, 168
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 3 cut(s) 92, 248, 267
XapI RAATTY 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.