Prupe.8G169600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0004843
Physical Location & Seq
Reverse (-)
17435439 .. 17435687
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G169600.1

Sequence Viewer

Length: 249 bp
ACTCAGGAAGATGGGGTTGTGAGAATGAAGATCTTGGTAAGAAGGCAAGATTTGAAGCAAGTTCTTGAGCTCATGAATGGAGGAATCAACAGTCAAGCATCAGTTGTTAGGCCATCATCATCTTTGTGTGTGGAGCAGAGGCTAAGTCTTTTGAGAAAGAAGCATCTTCTAAGAGCCAGTTTGGCTGCCAAGCACAGCCGCCAGGGTTCATGGTGCCCTGCACTGCAAAGCATCCCTGAGGAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.19

Weight (kDa)

10.18

Isoelectric Point (pI)

70.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 213
AciI CCGC 1 cut(s) 199
AcsI RAATTY 1 cut(s) 243
AgsI TTSAA 1 cut(s) 55
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw21I GWGCWC 1 cut(s) 72
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 243
AxyI CCTNAGG 1 cut(s) 237
BaeGI GKGCMC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 172
BccI CCATC 2 cut(s) 5, 121
BciT130I CCWGG 1 cut(s) 203
BglI GCCNNNNNGGC 1 cut(s) 182
BglII AGATCT 1 cut(s) 30
BisI GCNGC 2 cut(s) 186, 199
BlsI GCNGC 2 cut(s) 187, 200
Bme1390I CCNGG 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 3 cut(s) 107, 172, 240
BpuEI CTTGAG 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 202
Bse1I ACTGG 1 cut(s) 177
Bse21I CCTNAGG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 1 cut(s) 231
BseMII CTCAG 2 cut(s) 17, 228
BseNI ACTGG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 218
BseXI GCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 1 cut(s) 112
BshNI GGYRCC 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 72
BsnI GGCC 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 72, 218
Bsp143I GATC 1 cut(s) 30
BspACI CCGC 1 cut(s) 199
BspANI GGCC 1 cut(s) 112
BspCNI CTCAG 2 cut(s) 16, 229
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 213
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 92
BstDEI CTNAG 4 cut(s) 3, 143, 170, 237
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
Bsu36I CCTNAGG 1 cut(s) 237
BsuRI GGCC 1 cut(s) 112
BtsCI GGATG 1 cut(s) 231
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
CciI TCATGA 1 cut(s) 72
CviAII CATG 2 cut(s) 73, 210
CviJI RGCY 6 cut(s) 70, 112, 142, 176, 185, 198
CviKI_1 RGCY 6 cut(s) 70, 112, 142, 176, 185, 198
DdeI CTNAG 4 cut(s) 3, 143, 170, 237
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
Ecl136II GAGCTC 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 70
Eco81I CCTNAGG 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 72
FaeI CATG 2 cut(s) 76, 213
FaiI YATR 2 cut(s) 74, 211
FatI CATG 2 cut(s) 72, 209
Fnu4HI GCNGC 2 cut(s) 186, 199
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 2 cut(s) 186, 199
GluI GCNGC 2 cut(s) 186, 199
HaeIII GGCC 1 cut(s) 112
Hin1II CATG 2 cut(s) 76, 213
HinfI GANTC 1 cut(s) 84
Hpy188III TCNNGA 3 cut(s) 5, 65, 73
HpyAV CCTTC 1 cut(s) 36
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 2 cut(s) 221, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 4 cut(s) 3, 143, 170, 237
Hsp92II CATG 2 cut(s) 76, 213
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 4 cut(s) 188, 190, 215, 231
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 3 cut(s) 107, 172, 240
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 3 cut(s) 20, 40, 158
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 2 cut(s) 72, 218
MluCI AATT 1 cut(s) 243
MnlI CCTC 3 cut(s) 74, 132, 232
MseI TTAA 1 cut(s) 247
MslI CAYNNNNRTG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 1 cut(s) 30
NlaIII CATG 2 cut(s) 76, 213
NlaIV GGNNCC 1 cut(s) 215
PagI TCATGA 1 cut(s) 72
PfeI GAWTC 1 cut(s) 84
PkrI GCNGC 2 cut(s) 187, 200
Psp124BI GAGCTC 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 215
PsuI RGATCY 1 cut(s) 30
RseI CAYNNNNRTG 1 cut(s) 124
SacI GAGCTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 247
SatI GCNGC 2 cut(s) 186, 199
Sau3AI GATC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 2 cut(s) 72, 218
SetI ASST 1 cut(s) 72
SfaNI GCATC 3 cut(s) 107, 172, 240
SmiMI CAYNNNNRTG 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 1 cut(s) 243
SsiI CCGC 1 cut(s) 199
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 92
TasI AATT 1 cut(s) 243
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 1 cut(s) 247
Tru9I TTAA 1 cut(s) 247
TscAI CASTG 1 cut(s) 228
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 3 cut(s) 41, 89, 198
TspRI CASTG 1 cut(s) 228
XapI RAATTY 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.