Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004843

Physical Location & Seq

Genomic Coordinates Reverse (-)

15550911 .. 15551300

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g12070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGTCTGATCAAGAGAGTATTATTTCGACATTTTCGAGCTGCGATTAGTCGAAAGAGCAATTTGATCGGAAGCAATGAGTTCATGGAGGCCGTTGCAAAAGTAAACGGTGATCATCATCATCAGGGTACTAACGTAATTTCTCATCAGACTCAGGAAGATGGGGTTGTGAGGATGAAGATTCTGGTAAGAAAGCAAGATTTGAAGCAAGTTCTGGAGCTCATGAATGGCGCTGGCATTCATAACCAAGCATCAGTTGTTAGGGCAACATCGTCATTTTCTCTGGAGCAGAGGCCGAGTCTGTTGAAAAAAAAGCAAATTCTGAGAGCCAAACATAGTCGCCAAAGTTCCTGGATCCCGGAGCTGCAAAGCATCCCTGAAGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

130

Amino Acids

14.64

Weight (kDa)

10.52

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15710 FvH4_2g15711 FvH4_2g15720 FvH4_2g15721
prunus_persica	Prupe.8G169600_v2.0.a1
pyrus_communis	pycom05g12070 pycom10g11060
rosa_laevigata	RLG00000013172 RLG00000013173 RLG00000013174 RLG00000013175
rosa_multiflora	Rmu_sc0002080.1_g000015
rosa_roxburghii	Rroxscaffold_7G00189200 Rroxscaffold_7G00189210
rosa_rugosa	Rorug06G0121000 Rorug06G0121100 Rorug06G0121200.1
rosa_samantha	Rh6AG229900 Rh6AG230000 Rh6AG230200 Rh6AG230300 Rh6BG235000 Rh6BG235100 Rh6BG235200 Rh6CG237000 Rh6CG237100 Rh6CG237300 Rh6DG228800 Rh6DG228900 Rh6DG229000 Rh6DG229100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	349, 362
AcsI	RAATTY	2 cut(s)	318, 384
AfaI	GTAC	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	205, 307
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	3 cut(s)	41, 220, 364
AluI	AGCT	3 cut(s)	41, 220, 364
Alw21I	GWGCWC	1 cut(s)	222
AlwI	GGATC	2 cut(s)	349, 362
AoxI	GGCC	2 cut(s)	90, 293
ApeKI	GCWGC	2 cut(s)	41, 364
ApoI	RAATTY	2 cut(s)	318, 384
AspLEI	GCGC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	359
AsuHPI	GGTGA	1 cut(s)	122
BaeI	ACNNNNGTAYC	2 cut(s)	120, 153
BamHI	GGATCC	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	28, 351
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	77
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciT130I	CCWGG	1 cut(s)	352
BclI	TGATCA	2 cut(s)	9, 112
BcnI	CCSGG	1 cut(s)	359
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	2 cut(s)	42, 365
BlsI	GCNGC	2 cut(s)	43, 366
Bme1390I	CCNGG	2 cut(s)	352, 359
BmiI	GGNNCC	1 cut(s)	356
BmrFI	CCNGG	2 cut(s)	352, 359
BmsI	GCATC	2 cut(s)	260, 381
BpmI	CTGGAG	2 cut(s)	236, 305
BpuMI	CCSGG	1 cut(s)	359
BsaBI	GATNNNNATC	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	82
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	352
BseGI	GGATG	2 cut(s)	180, 372
BseJI	GATNNNNATC	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	167, 314
BseXI	GCAGC	2 cut(s)	28, 351
BshFI	GGCC	2 cut(s)	92, 295
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	359
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	92, 295
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	4 cut(s)	9, 66, 112, 354
BspANI	GGCC	2 cut(s)	92, 295
BspCNI	CTCAG	2 cut(s)	166, 315
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	356
BspPI	GGATC	2 cut(s)	349, 362
BsrDI	GCAATG	1 cut(s)	82
BssMI	GATC	4 cut(s)	9, 66, 112, 354
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	2 cut(s)	153, 323
BstF5I	GGATG	2 cut(s)	180, 372
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	4 cut(s)	12, 69, 115, 357
BstMBI	GATC	4 cut(s)	9, 66, 112, 354
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	2 cut(s)	350, 357
BstV1I	GCAGC	2 cut(s)	28, 351
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	92, 295
BtsCI	GGATG	2 cut(s)	180, 372
Cac8I	GCNNGC	1 cut(s)	235
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	2 cut(s)	85, 223
CviJI	RGCY	6 cut(s)	41, 92, 220, 295, 329, 364
CviKI_1	RGCY	6 cut(s)	41, 92, 220, 295, 329, 364
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	2 cut(s)	153, 323
DpnI	GATC	4 cut(s)	11, 68, 114, 356
DpnII	GATC	4 cut(s)	9, 66, 112, 354
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	2 cut(s)	88, 226
FaiI	YATR	4 cut(s)	86, 224, 243, 336
FatI	CATG	2 cut(s)	84, 222
FbaI	TGATCA	2 cut(s)	9, 112
Fnu4HI	GCNGC	2 cut(s)	42, 365
FokI	GGATG	2 cut(s)	187, 359
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	2 cut(s)	42, 365
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	2 cut(s)	42, 365
GsuI	CTGGAG	2 cut(s)	236, 305
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	92, 295
HapII	CCGG	1 cut(s)	359
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	88, 226
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	3 cut(s)	151, 181, 298
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	4 cut(s)	9, 71, 150, 324
Hpy188III	TCNNGA	5 cut(s)	13, 155, 215, 223, 284
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	2 cut(s)	98, 367
HpyF3I	CTNAG	2 cut(s)	153, 323
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	88, 226
HspAI	GCGC	1 cut(s)	231
Ksp22I	TGATCA	2 cut(s)	9, 112
Kzo9I	GATC	4 cut(s)	9, 66, 112, 354
LmnI	GCTCC	3 cut(s)	217, 286, 361
LpnPI	CCDG	9 cut(s)	110, 140, 170, 200, 219, 269, 337, 364, 372
Lsp1109I	GCAGC	2 cut(s)	28, 351
LweI	GCATC	2 cut(s)	260, 381
MaeII	ACGT	1 cut(s)	135
MalI	GATC	4 cut(s)	11, 68, 114, 356
MboI	GATC	4 cut(s)	9, 66, 112, 354
MboII	GAAGA	2 cut(s)	170, 190
MflI	RGATCY	1 cut(s)	354
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	4 cut(s)	61, 138, 318, 384
MlyI	GAGTC	2 cut(s)	145, 307
MnlI	CCTC	3 cut(s)	82, 165, 285
MseI	TTAA	1 cut(s)	388
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	2 cut(s)	352, 359
Mva1269I	GAATGC	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	352
NciI	CCSGG	1 cut(s)	359
NdeII	GATC	4 cut(s)	9, 66, 112, 354
NlaIII	CATG	2 cut(s)	88, 226
NlaIV	GGNNCC	1 cut(s)	356
NmeAIII	GCCGAG	1 cut(s)	321
PagI	TCATGA	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PctI	GAATGC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	181
PfoI	TCCNGGA	2 cut(s)	350, 357
PkrI	GCNGC	2 cut(s)	43, 366
PleI	GAGTC	2 cut(s)	145, 306
PpsI	GAGTC	2 cut(s)	145, 306
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	354
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	388
SatI	GCNGC	2 cut(s)	42, 365
Sau3AI	GATC	4 cut(s)	9, 66, 112, 354
SchI	GAGTC	2 cut(s)	145, 307
ScrFI	CCNGG	2 cut(s)	352, 359
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	4 cut(s)	43, 138, 222, 366
SfaNI	GCATC	2 cut(s)	260, 381
Sse9I	AATT	4 cut(s)	61, 138, 318, 384
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	350, 357
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	3 cut(s)	28, 37, 52
TasI	AATT	4 cut(s)	61, 138, 318, 384
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	388
Tru9I	TTAA	1 cut(s)	388
TseI	GCWGC	2 cut(s)	41, 364
TspDTI	ATGAA	4 cut(s)	73, 191, 230, 239
XapI	RAATTY	2 cut(s)	318, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.