Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004843

Physical Location & Seq

Genomic Coordinates Reverse (-)

14579814 .. 14580209

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g11060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGGGATGATCAAGAGAGTACTATTTCGACATTTTCGAGCTCCGATTAATCGAAAGAACAATTTGATCAGAAGCAATGCTTTAATGGAGGCCGTTGCAAAAGTAAATGGTGATCATCATCATAAGAGTACTAGCGTAATTTCTCATCAGACTCAGGAAGATGGGGCTGTGAGGATGAAGATTCTGGTAAGAAGGGATGATTTGAAGCAAGTTCTGGAGCTCATGAATGGCAACAGCATTCATAACCAAGCATCAGTTGTTAGGGCATCGTCTTCATTTTCTTTGGAGCAGAGGCTAAATGTTTTGAGAAAAAAGCAAATTCAAAGAGCCAAACAACGCCACCAGAGTTCTTGGAGTCCTGAATTGCAAAGCATCCCTGAAGAAATTCAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

132

Amino Acids

15.16

Weight (kDa)

11.15

Isoelectric Point (pI)

55.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15710 FvH4_2g15711 FvH4_2g15720 FvH4_2g15721
prunus_persica	Prupe.8G169600_v2.0.a1
pyrus_communis	pycom05g12070 pycom10g11060
rosa_laevigata	RLG00000013172 RLG00000013173 RLG00000013174 RLG00000013175
rosa_multiflora	Rmu_sc0002080.1_g000015
rosa_roxburghii	Rroxscaffold_7G00189200 Rroxscaffold_7G00189210
rosa_rugosa	Rorug06G0121000 Rorug06G0121100 Rorug06G0121200.1
rosa_samantha	Rh6AG229900 Rh6AG230000 Rh6AG230200 Rh6AG230300 Rh6BG235000 Rh6BG235100 Rh6BG235200 Rh6CG237000 Rh6CG237100 Rh6CG237300 Rh6DG228800 Rh6DG228900 Rh6DG229000 Rh6DG229100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	318, 384
AfaI	GTAC	2 cut(s)	21, 130
AgsI	TTSAA	3 cut(s)	205, 323, 389
AluBI	AGCT	2 cut(s)	41, 220
AluI	AGCT	2 cut(s)	41, 220
Alw21I	GWGCWC	2 cut(s)	43, 222
AoxI	GGCC	1 cut(s)	90
ApoI	RAATTY	2 cut(s)	318, 384
AseI	ATTAAT	1 cut(s)	48
Asp700I	GAANNNNTTC	1 cut(s)	384
AsuHPI	GGTGA	1 cut(s)	122
BanII	GRGCYC	2 cut(s)	43, 222
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	2 cut(s)	43, 222
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	77
BclI	TGATCA	3 cut(s)	9, 66, 112
BfaI	CTAG	1 cut(s)	132
BmcAI	AGTACT	2 cut(s)	21, 130
BmsI	GCATC	3 cut(s)	260, 275, 381
BpiI	GAAGAC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	82
Bse8I	GATNNNNATC	1 cut(s)	117
BseGI	GGATG	4 cut(s)	12, 180, 202, 372
BseJI	GATNNNNATC	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	167
BshFI	GGCC	1 cut(s)	92
BsiHKAI	GWGCWC	2 cut(s)	43, 222
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	43, 222
Bsp143I	GATC	3 cut(s)	9, 66, 112
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	82
BssMI	GATC	3 cut(s)	9, 66, 112
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	4 cut(s)	12, 180, 202, 372
BstKTI	GATC	3 cut(s)	12, 69, 115
BstMBI	GATC	3 cut(s)	9, 66, 112
BstV2I	GAAGAC	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	4 cut(s)	12, 180, 202, 372
CciI	TCATGA	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	20, 129
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	6 cut(s)	41, 92, 167, 220, 295, 329
CviKI_1	RGCY	6 cut(s)	41, 92, 167, 220, 295, 329
CviQI	GTAC	2 cut(s)	20, 129
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	3 cut(s)	11, 68, 114
DpnII	GATC	3 cut(s)	9, 66, 112
Ecl136II	GAGCTC	2 cut(s)	41, 220
Eco24I	GRGCYC	2 cut(s)	43, 222
Eco53kI	GAGCTC	2 cut(s)	41, 220
EcoICRI	GAGCTC	2 cut(s)	41, 220
EcoT38I	GRGCYC	2 cut(s)	43, 222
FaeI	CATG	1 cut(s)	226
FaiI	YATR	3 cut(s)	123, 224, 243
FalI	AAGNNNNNCTT	2 cut(s)	64, 96
FatI	CATG	1 cut(s)	222
FbaI	TGATCA	3 cut(s)	9, 66, 112
FokI	GGATG	4 cut(s)	19, 187, 209, 359
FriOI	GRGCYC	2 cut(s)	43, 222
FspBI	CTAG	1 cut(s)	132
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	226
HinfI	GANTC	3 cut(s)	151, 181, 355
HphI	GGTGA	1 cut(s)	122
Hpy188I	TCNGA	3 cut(s)	45, 71, 150
Hpy188III	TCNNGA	5 cut(s)	13, 155, 215, 223, 359
HpyAV	CCTTC	1 cut(s)	186
HpyCH4V	TGCA	2 cut(s)	98, 367
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	226
Ksp22I	TGATCA	3 cut(s)	9, 66, 112
Kzo9I	GATC	3 cut(s)	9, 66, 112
LmnI	GCTCC	3 cut(s)	46, 217, 286
LpnPI	CCDG	6 cut(s)	140, 170, 200, 356, 372, 390
LweI	GCATC	3 cut(s)	260, 275, 381
MaeI	CTAG	1 cut(s)	132
MalI	GATC	3 cut(s)	11, 68, 114
MboI	GATC	3 cut(s)	9, 66, 112
MboII	GAAGA	4 cut(s)	170, 190, 264, 392
MhlI	GDGCHC	2 cut(s)	43, 222
MluCI	AATT	6 cut(s)	61, 138, 318, 362, 384, 389
MlyI	GAGTC	2 cut(s)	145, 364
MnlI	CCTC	3 cut(s)	82, 165, 285
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	3 cut(s)	48, 83, 394
Mva1269I	GAATGC	1 cut(s)	237
NdeII	GATC	3 cut(s)	9, 66, 112
NlaIII	CATG	1 cut(s)	226
PagI	TCATGA	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PctI	GAATGC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	181
PleI	GAGTC	2 cut(s)	145, 363
PpsI	GAGTC	2 cut(s)	145, 363
PshBI	ATTAAT	1 cut(s)	48
Psp124BI	GAGCTC	2 cut(s)	43, 222
RsaI	GTAC	2 cut(s)	21, 130
RsaNI	GTAC	2 cut(s)	20, 129
SacI	GAGCTC	2 cut(s)	43, 222
SaqAI	TTAA	3 cut(s)	48, 83, 394
Sau3AI	GATC	3 cut(s)	9, 66, 112
ScaI	AGTACT	2 cut(s)	21, 130
SchI	GAGTC	2 cut(s)	145, 364
SduI	GDGCHC	2 cut(s)	43, 222
SetI	ASST	2 cut(s)	43, 222
SfaNI	GCATC	3 cut(s)	260, 275, 381
Sse9I	AATT	6 cut(s)	61, 138, 318, 362, 384, 389
SspMI	CTAG	1 cut(s)	132
SstI	GAGCTC	2 cut(s)	43, 222
TaqI	TCGA	3 cut(s)	28, 37, 52
TasI	AATT	6 cut(s)	61, 138, 318, 362, 384, 389
TatI	WGTACW	2 cut(s)	19, 128
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	3 cut(s)	48, 83, 394
Tru9I	TTAA	3 cut(s)	48, 83, 394
TspDTI	ATGAA	4 cut(s)	191, 230, 239, 264
VspI	ATTAAT	1 cut(s)	48
XapI	RAATTY	2 cut(s)	318, 384
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	1 cut(s)	132
ZrmI	AGTACT	2 cut(s)	21, 130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.