Rh6DG229000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004843
Physical Location & Seq
Reverse (-)
40959952 .. 40965846
5895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG229000.1

Sequence Viewer

Length: 312 bp
ATGGAAGGGATCAACTCATCATCATCATCTGCAGAAGGAAAGCAAAGCCGAAAGGCAATGCTAAAGAAAGCACTCTTTCATCATTTCAGATCAGCTCGGGTACATCCCAAGAACAGAAGCAGCAGGATCAGCAATCTACTATCGAAGGCCACAGCCATTGCGAGGGCGAGCGGCCAGGAGGGTATCAATGCACTTTCCCAGTTGACTCAGGAAAACAATGGGGTGGTGAGGATGAAGATTCTGGTACTAGCTCGTTGCTTCCACATTTCAGAAAGGAGGAAAAAGGTGCCCAGAGATGATTCTGGAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.41

Weight (kDa)

11.21

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 286
AccBSI CCGCTC 1 cut(s) 171
AciI CCGC 1 cut(s) 171
AclWI GGATC 2 cut(s) 17, 134
AcoI YGGCCR 1 cut(s) 172
AfaI GTAC 2 cut(s) 102, 246
AfiI CCNNNNNNNGG 1 cut(s) 162
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 2 cut(s) 95, 251
AluI AGCT 2 cut(s) 95, 251
AlwI GGATC 2 cut(s) 17, 134
Ama87I CYCGRG 1 cut(s) 96
AoxI GGCC 2 cut(s) 147, 172
ApeKI GCWGC 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 238
AvaI CYCGRG 1 cut(s) 96
BaeGI GKGCMC 1 cut(s) 291
BanI GGYRCC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 176
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 2 cut(s) 121, 172
BlsI GCNGC 2 cut(s) 122, 173
Bme1390I CCNGG 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 176
BmrI ACTGGG 1 cut(s) 193
BmuI ACTGGG 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 199
Bse3DI GCAATG 2 cut(s) 63, 156
BseBI CCWGG 1 cut(s) 176
BseGI GGATG 2 cut(s) 103, 237
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMI GCAATG 2 cut(s) 63, 156
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 1 cut(s) 132
BshFI GGCC 2 cut(s) 149, 174
BshNI GGYRCC 1 cut(s) 286
BsiHKCI CYCGRG 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 162
BsnI GGCC 2 cut(s) 149, 174
BsoBI CYCGRG 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 3 cut(s) 9, 89, 126
BspACI CCGC 1 cut(s) 171
BspANI GGCC 2 cut(s) 149, 174
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 288
BspMAI CTGCAG 1 cut(s) 34
BspPI GGATC 2 cut(s) 17, 134
BspT107I GGYRCC 1 cut(s) 286
BsrBI CCGCTC 1 cut(s) 171
BsrDI GCAATG 2 cut(s) 63, 156
BsrI ACTGG 1 cut(s) 199
BssMI GATC 3 cut(s) 9, 89, 126
Bst2UI CCWGG 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 207
BstF5I GGATG 2 cut(s) 103, 237
BstKTI GATC 3 cut(s) 12, 92, 129
BstMBI GATC 3 cut(s) 9, 89, 126
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 132
BsuRI GGCC 2 cut(s) 149, 174
BtsCI GGATG 2 cut(s) 103, 237
Cac8I GCNNGC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 101, 245
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviJI RGCY 6 cut(s) 48, 95, 149, 155, 174, 251
CviKI_1 RGCY 6 cut(s) 48, 95, 149, 155, 174, 251
CviQI GTAC 2 cut(s) 101, 245
DdeI CTNAG 1 cut(s) 207
DpnI GATC 3 cut(s) 11, 91, 128
DpnII GATC 3 cut(s) 9, 89, 126
EaeI YGGCCR 1 cut(s) 172
Eco88I CYCGRG 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 121, 172
FokI GGATG 2 cut(s) 90, 244
Fsp4HI GCNGC 2 cut(s) 121, 172
FspBI CTAG 1 cut(s) 248
GluI GCNGC 2 cut(s) 121, 172
HaeIII GGCC 2 cut(s) 149, 174
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 3 cut(s) 205, 238, 299
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 2 cut(s) 89, 271
Hpy188III TCNNGA 2 cut(s) 209, 303
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 2 cut(s) 29, 139
HpyCH4V TGCA 2 cut(s) 32, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpyF3I CTNAG 1 cut(s) 207
Kzo9I GATC 3 cut(s) 9, 89, 126
LpnPI CCDG 8 cut(s) 109, 161, 188, 194, 212, 227, 288, 304
Lsp1109I GCAGC 1 cut(s) 132
MaeI CTAG 1 cut(s) 248
MalI GATC 3 cut(s) 11, 91, 128
MbiI CCGCTC 1 cut(s) 171
MboI GATC 3 cut(s) 9, 89, 126
MboII GAAGA 1 cut(s) 247
MhlI GDGCHC 1 cut(s) 291
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 4 cut(s) 156, 172, 222, 270
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 129
NdeII GATC 3 cut(s) 9, 89, 126
NlaIV GGNNCC 1 cut(s) 288
PfeI GAWTC 2 cut(s) 238, 299
PkrI GCNGC 2 cut(s) 122, 173
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 288
PstI CTGCAG 1 cut(s) 34
RsaI GTAC 2 cut(s) 102, 246
RsaNI GTAC 2 cut(s) 101, 245
SatI GCNGC 2 cut(s) 121, 172
Sau3AI GATC 3 cut(s) 9, 89, 126
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 291
SetI ASST 3 cut(s) 97, 253, 288
SfcI CTRYAG 1 cut(s) 30
SsiI CCGC 1 cut(s) 171
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 174
TaqI TCGA 1 cut(s) 143
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 2 cut(s) 238, 299
TseI GCWGC 1 cut(s) 120
TspDTI ATGAA 2 cut(s) 68, 248
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.