Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004843

Physical Location & Seq

Genomic Coordinates Reverse (-)

44164223 .. 44164872

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG235100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAAGCGGGCAATTCATCATCATCTGAAAAAAGAAAGCAGAACCGAAAGGCATCGCTAAAGAAAGCGCTCTTTGGACGTTTCAGATCAGCCAGGATTTATCAGAAGAACAAGAGTAGCAGAATCAATGTACTATCGAAGGCTGCTTCCATTGCAAAGGTGAACAGCCTTGACGGTATTGATGTACTATCCCAGTCGAGTCAGGAAGACAATGGGGCTGTGAAGTTGAAGATTCTGGTAAAGAAGGTGGATTTGGAGCAATTTCTGGAACTCATGAGGAATAATAACGACGATAATAACAGTGACAACAGCCATAGTAACCACCATGACAATGACAATGGTGATGATGAGGAAGATGAAGAAGCATCATCGTGGAAAGAGGAGCGCCTAAATCAGTTGCGGAAAAAGCGTAGGCGCCAAACTTCTTGGAGCCTTACTCTGCAAACCATCCCGGAAGAAATTTTAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

156

Amino Acids

17.81

Weight (kDa)

9.12

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15710 FvH4_2g15711 FvH4_2g15720 FvH4_2g15721
prunus_persica	Prupe.8G169600_v2.0.a1
pyrus_communis	pycom05g12070 pycom10g11060
rosa_laevigata	RLG00000013172 RLG00000013173 RLG00000013174 RLG00000013175
rosa_multiflora	Rmu_sc0002080.1_g000015
rosa_roxburghii	Rroxscaffold_7G00189200 Rroxscaffold_7G00189210
rosa_rugosa	Rorug06G0121000 Rorug06G0121100 Rorug06G0121200.1
rosa_samantha	Rh6AG229900 Rh6AG230000 Rh6AG230200 Rh6AG230300 Rh6BG235000 Rh6BG235100 Rh6BG235200 Rh6CG237000 Rh6CG237100 Rh6CG237300 Rh6DG228800 Rh6DG228900 Rh6DG229000 Rh6DG229100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	414
AciI	CCGC	2 cut(s)	8, 400
AcsI	RAATTY	1 cut(s)	459
AcyI	GRCGYC	1 cut(s)	415
AfaI	GTAC	2 cut(s)	132, 186
AfeI	AGCGCT	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	92
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
Aor51HI	AGCGCT	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	459
AspLEI	GCGC	3 cut(s)	70, 387, 417
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	172, 353
BanI	GGYRCC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	1 cut(s)	455
BciT130I	CCWGG	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	452
BfoI	RGCGCY	3 cut(s)	71, 388, 418
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	2 cut(s)	94, 452
BmiI	GGNNCC	2 cut(s)	416, 431
BmrFI	CCNGG	2 cut(s)	94, 452
BmrI	ACTGGG	1 cut(s)	187
BmsI	GCATC	2 cut(s)	62, 374
BmuI	ACTGGG	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	213
BplI	GAGNNNNNCTC	2 cut(s)	421, 453
BpuMI	CCSGG	1 cut(s)	452
BsaHI	GRCGYC	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	447
BseMI	GCAATG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	452
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	2 cut(s)	8, 400
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	416, 431
BspT107I	GGYRCC	1 cut(s)	414
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	193
BssMI	GATC	1 cut(s)	86
BssNI	GRCGYC	1 cut(s)	415
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	2 cut(s)	176, 302
BstACI	GRCGYC	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	447
BstH2I	RGCGCY	3 cut(s)	71, 388, 418
BstHHI	GCGC	3 cut(s)	70, 387, 417
BstKTI	GATC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 406
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	92, 450
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	10
CciI	TCATGA	1 cut(s)	273
CfoI	GCGC	3 cut(s)	70, 387, 417
Csp6I	GTAC	2 cut(s)	131, 185
CviAII	CATG	2 cut(s)	274, 326
CviJI	RGCY	7 cut(s)	92, 143, 168, 218, 312, 432, 467
CviKI_1	RGCY	7 cut(s)	92, 143, 168, 218, 312, 432, 467
CviQI	GTAC	2 cut(s)	131, 185
DinI	GGCGCC	1 cut(s)	416
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
Eco47III	AGCGCT	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	92
EgeI	GGCGCC	1 cut(s)	416
EheI	GGCGCC	1 cut(s)	416
FaeI	CATG	2 cut(s)	277, 329
FaiI	YATR	3 cut(s)	275, 315, 327
FatI	CATG	2 cut(s)	273, 325
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	144
GlaI	GCGC	3 cut(s)	69, 386, 416
GluI	GCNGC	1 cut(s)	144
HaeII	RGCGCY	3 cut(s)	71, 388, 418
HapII	CCGG	1 cut(s)	452
HhaI	GCGC	3 cut(s)	70, 387, 417
Hin1I	GRCGYC	1 cut(s)	415
Hin1II	CATG	2 cut(s)	277, 329
Hin6I	GCGC	3 cut(s)	68, 385, 415
HinP1I	GCGC	3 cut(s)	68, 385, 415
HinfI	GANTC	3 cut(s)	123, 199, 232
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	2 cut(s)	172, 353
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	3 cut(s)	28, 86, 105
Hpy188III	TCNNGA	3 cut(s)	203, 266, 274
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	133, 238
HpyCH4III	ACNGT	2 cut(s)	176, 302
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	155, 442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 406
HpySE526I	ACGT	1 cut(s)	79
Hsp92I	GRCGYC	1 cut(s)	415
Hsp92II	CATG	2 cut(s)	277, 329
HspAI	GCGC	3 cut(s)	68, 385, 415
KasI	GGCGCC	1 cut(s)	414
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	3 cut(s)	256, 382, 429
LpnPI	CCDG	7 cut(s)	79, 106, 188, 206, 221, 251, 465
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	2 cut(s)	62, 374
MaeII	ACGT	1 cut(s)	79
MaeIII	GTNAC	2 cut(s)	302, 317
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	6 cut(s)	118, 218, 241, 365, 371, 467
MluCI	AATT	3 cut(s)	13, 260, 459
Mly113I	GGCGCC	1 cut(s)	415
MlyI	GAGTC	1 cut(s)	208
MnlI	CCTC	3 cut(s)	270, 343, 373
MslI	CAYNNNNRTG	2 cut(s)	330, 370
MspI	CCGG	1 cut(s)	452
MspR9I	CCNGG	2 cut(s)	94, 452
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	152, 406
NarI	GGCGCC	1 cut(s)	415
NciI	CCSGG	1 cut(s)	452
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	2 cut(s)	277, 329
NlaIV	GGNNCC	2 cut(s)	416, 431
NmuCI	GTSAC	1 cut(s)	302
PagI	TCATGA	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	123, 232
PfoI	TCCNGGA	1 cut(s)	450
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	207
PluTI	GGCGCC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	416, 431
RsaI	GTAC	2 cut(s)	132, 186
RsaNI	GTAC	2 cut(s)	131, 185
RseI	CAYNNNNRTG	2 cut(s)	330, 370
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	2 cut(s)	94, 452
SetI	ASST	3 cut(s)	82, 162, 249
SfaNI	GCATC	2 cut(s)	62, 374
SfoI	GGCGCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	2 cut(s)	330, 370
Sse9I	AATT	3 cut(s)	13, 260, 459
SsiI	CCGC	2 cut(s)	8, 400
SspDI	GGCGCC	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	92, 450
TaaI	ACNGT	2 cut(s)	176, 302
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	2 cut(s)	137, 197
TasI	AATT	3 cut(s)	13, 260, 459
TatI	WGTACW	2 cut(s)	130, 184
TfiI	GAWTC	2 cut(s)	123, 232
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	2 cut(s)	6, 372
TspRI	CASTG	1 cut(s)	307
XapI	RAATTY	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.