Rmu_sc0002080.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002080.1
OG0004843
Physical Location & Seq
Forward (+)
64206 .. 64667
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002080.1_g000015.1.cds

Sequence Viewer

Length: 462 bp
atggaagggatcaactcatcatcatctgcagaaggaaagcaaagccgaaaggcaatgctaaagaaagcactctttcatcatttcagatcagctcgggttcatcacaagaacagaagcagcaggatcagcaatctactatcgaaggccacagccattgcaagggcgagcggccaggagggtatcaatgcactttcccagttgactcaggaaaacaatggggtggtgaggatgaagattctggtgagaaaggaagatttggagcaagttttggaactgatgagaaataacaacaacaataataacaatactaaccacaataacatggacaattttactgatgaggacgaagaaaaagcatcattgatgattgaggagcgcctaaatctcttgcggaaaaagcataggcgccacaattcttggagtcctgctcttcaaaccatcccggaagaaattttagcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.51

Weight (kDa)

9.9

Isoelectric Point (pI)

58.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 405
AccBSI CCGCTC 1 cut(s) 168
AciI CCGC 2 cut(s) 168, 391
AclWI GGATC 2 cut(s) 17, 131
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 1 cut(s) 450
AcyI GRCGYC 1 cut(s) 406
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 1 cut(s) 434
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
AlwI GGATC 2 cut(s) 17, 131
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 2 cut(s) 144, 169
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 450
AspLEI GCGC 2 cut(s) 378, 408
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 2 cut(s) 235, 253
AvaI CYCGRG 1 cut(s) 93
BanI GGYRCC 1 cut(s) 405
BbvI GCAGC 1 cut(s) 129
BccI CCATC 1 cut(s) 446
BciT130I CCWGG 1 cut(s) 173
BcnI CCSGG 1 cut(s) 443
BfaI CTAG 1 cut(s) 460
BfmI CTRYAG 1 cut(s) 27
BfoI RGCGCY 2 cut(s) 379, 409
BisI GCNGC 2 cut(s) 118, 169
BlsI GCNGC 2 cut(s) 119, 170
Bme1390I CCNGG 2 cut(s) 173, 443
BmeT110I CYCGRG 1 cut(s) 93
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 2 cut(s) 173, 443
BmrI ACTGGG 1 cut(s) 190
BmsI GCATC 1 cut(s) 365
BmuI ACTGGG 1 cut(s) 190
BplI GAGNNNNNCTC 2 cut(s) 412, 444
BpuMI CCSGG 1 cut(s) 443
BsaHI GRCGYC 1 cut(s) 406
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 196
Bse3DI GCAATG 2 cut(s) 60, 153
BseBI CCWGG 1 cut(s) 173
BseGI GGATG 2 cut(s) 234, 438
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMI GCAATG 2 cut(s) 60, 153
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 1 cut(s) 386
BseXI GCAGC 1 cut(s) 129
BshFI GGCC 2 cut(s) 146, 171
BshNI GGYRCC 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 443
BslI CCNNNNNNNGG 1 cut(s) 159
BsnI GGCC 2 cut(s) 146, 171
BsoBI CYCGRG 1 cut(s) 93
Bsp143I GATC 3 cut(s) 9, 86, 123
BspACI CCGC 2 cut(s) 168, 391
BspANI GGCC 2 cut(s) 146, 171
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 407
BspMAI CTGCAG 1 cut(s) 31
BspPI GGATC 2 cut(s) 17, 131
BspQI GCTCTTC 1 cut(s) 435
BspT107I GGYRCC 1 cut(s) 405
BsrBI CCGCTC 1 cut(s) 168
BsrDI GCAATG 2 cut(s) 60, 153
BsrI ACTGG 1 cut(s) 196
BssMI GATC 3 cut(s) 9, 86, 123
BssNI GRCGYC 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 435
BstACI GRCGYC 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 234, 438
BstH2I RGCGCY 2 cut(s) 379, 409
BstHHI GCGC 2 cut(s) 378, 408
BstKTI GATC 3 cut(s) 12, 89, 126
BstMBI GATC 3 cut(s) 9, 86, 123
BstMWI GCNNNNNNNGC 2 cut(s) 126, 397
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 2 cut(s) 171, 441
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 129
BsuRI GGCC 2 cut(s) 146, 171
BtsCI GGATG 2 cut(s) 234, 438
Cac8I GCNNGC 1 cut(s) 166
CfoI GCGC 2 cut(s) 378, 408
CspCI CAANNNNNGTGG 4 cut(s) 136, 171, 398, 433
CviAII CATG 1 cut(s) 322
CviJI RGCY 6 cut(s) 45, 92, 146, 152, 171, 458
CviKI_1 RGCY 6 cut(s) 45, 92, 146, 152, 171, 458
DdeI CTNAG 1 cut(s) 204
DinI GGCGCC 1 cut(s) 407
DpnI GATC 3 cut(s) 11, 88, 125
DpnII GATC 3 cut(s) 9, 86, 123
EaeI YGGCCR 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Eco88I CYCGRG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 171
EgeI GGCGCC 1 cut(s) 407
EheI GGCGCC 1 cut(s) 407
FaeI CATG 1 cut(s) 325
FaiI YATR 2 cut(s) 323, 402
FatI CATG 1 cut(s) 321
Fnu4HI GCNGC 2 cut(s) 118, 169
FokI GGATG 2 cut(s) 241, 425
Fsp4HI GCNGC 2 cut(s) 118, 169
FspBI CTAG 1 cut(s) 460
GlaI GCGC 2 cut(s) 377, 407
GluI GCNGC 2 cut(s) 118, 169
HaeII RGCGCY 2 cut(s) 379, 409
HaeIII GGCC 2 cut(s) 146, 171
HapII CCGG 1 cut(s) 443
HhaI GCGC 2 cut(s) 378, 408
Hin1I GRCGYC 1 cut(s) 406
Hin1II CATG 1 cut(s) 325
Hin6I GCGC 2 cut(s) 376, 406
HinP1I GCGC 2 cut(s) 376, 406
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HinfI GANTC 3 cut(s) 202, 235, 421
HpaII CCGG 1 cut(s) 443
HphI GGTGA 2 cut(s) 235, 253
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 201
HpyAV CCTTC 2 cut(s) 26, 136
HpyCH4V TGCA 3 cut(s) 29, 158, 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 397
HpyF3I CTNAG 1 cut(s) 204
Hsp92I GRCGYC 1 cut(s) 406
Hsp92II CATG 1 cut(s) 325
HspAI GCGC 2 cut(s) 376, 406
KasI GGCGCC 1 cut(s) 405
Kzo9I GATC 3 cut(s) 9, 86, 123
LguI GCTCTTC 1 cut(s) 435
LmnI GCTCC 2 cut(s) 259, 373
LpnPI CCDG 8 cut(s) 106, 158, 185, 191, 209, 224, 438, 456
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 1 cut(s) 365
MaeI CTAG 1 cut(s) 460
MalI GATC 3 cut(s) 11, 88, 125
MbiI CCGCTC 1 cut(s) 168
MboI GATC 3 cut(s) 9, 86, 123
MboII GAAGA 5 cut(s) 244, 263, 359, 422, 458
MluCI AATT 3 cut(s) 328, 412, 450
Mly113I GGCGCC 1 cut(s) 406
MlyI GAGTC 2 cut(s) 196, 430
MnlI CCTC 4 cut(s) 169, 219, 334, 364
MspI CCGG 1 cut(s) 443
MspR9I CCNGG 2 cut(s) 173, 443
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 126, 397
NarI GGCGCC 1 cut(s) 406
NciI CCSGG 1 cut(s) 443
NdeII GATC 3 cut(s) 9, 86, 123
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 1 cut(s) 407
PciSI GCTCTTC 1 cut(s) 435
PfeI GAWTC 1 cut(s) 235
PfoI TCCNGGA 1 cut(s) 441
PkrI GCNGC 2 cut(s) 119, 170
PleI GAGTC 2 cut(s) 196, 429
PluTI GGCGCC 1 cut(s) 409
PpsI GAGTC 2 cut(s) 196, 429
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 407
PstI CTGCAG 1 cut(s) 31
SapI GCTCTTC 1 cut(s) 435
SatI GCNGC 2 cut(s) 118, 169
Sau3AI GATC 3 cut(s) 9, 86, 123
SchI GAGTC 2 cut(s) 196, 430
ScrFI CCNGG 2 cut(s) 173, 443
SetI ASST 1 cut(s) 94
SfaNI GCATC 1 cut(s) 365
SfcI CTRYAG 1 cut(s) 27
SfoI GGCGCC 1 cut(s) 407
Sse9I AATT 3 cut(s) 328, 412, 450
SsiI CCGC 2 cut(s) 168, 391
SspDI GGCGCC 1 cut(s) 405
SspMI CTAG 1 cut(s) 460
StyD4I CCNGG 2 cut(s) 171, 441
TaqI TCGA 1 cut(s) 140
TasI AATT 3 cut(s) 328, 412, 450
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 1 cut(s) 235
TseI GCWGC 1 cut(s) 117
TspDTI ATGAA 3 cut(s) 65, 89, 245
XapI RAATTY 1 cut(s) 450
XspI CTAG 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.