Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004843

Physical Location & Seq

Genomic Coordinates Reverse (-)

40284646 .. 40298957

Gene Structure 14312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG237300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGTTCCTCTTCTCCAAAGCAAGGAAAGCAAAGCGGAAGGGCGTCACTAAAGAAAGCATTCTTTCAGCATTTCAGGTCAGCTCGCATTCATCAAAAGAACAAGAGCAGCAGGAACAATCTACTAATGAGGGCCGCCTCTGTTTCAAAGGTGAGCAGCCAGGAGGGTCTCTTAATGTACTTTCCCAGTCGACTCAGGAAGACAATGGGGTGGTGAGGATGAAGATTCTTGTGAAAAGGAAGATTTGGATCGAGTTTTCGAATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

88

Amino Acids

9.95

Weight (kDa)

9.84

Isoelectric Point (pI)

55.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15710 FvH4_2g15711 FvH4_2g15720 FvH4_2g15721
prunus_persica	Prupe.8G169600_v2.0.a1
pyrus_communis	pycom05g12070 pycom10g11060
rosa_laevigata	RLG00000013172 RLG00000013173 RLG00000013174 RLG00000013175
rosa_multiflora	Rmu_sc0002080.1_g000015
rosa_roxburghii	Rroxscaffold_7G00189200 Rroxscaffold_7G00189210
rosa_rugosa	Rorug06G0121000 Rorug06G0121100 Rorug06G0121200.1
rosa_samantha	Rh6AG229900 Rh6AG230000 Rh6AG230200 Rh6AG230300 Rh6BG235000 Rh6BG235100 Rh6BG235200 Rh6CG237000 Rh6CG237100 Rh6CG237300 Rh6DG228800 Rh6DG228900 Rh6DG229000 Rh6DG229100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	188
AciI	CCGC	2 cut(s)	34, 133
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	106, 154
ApoI	RAATTY	1 cut(s)	259
Asp700I	GAANNNNTTC	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	161, 223
AsuII	TTCGAA	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	118, 166
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	171
BisI	GCNGC	3 cut(s)	107, 133, 155
BlsI	GCNGC	3 cut(s)	108, 134, 156
Bme1390I	CCNGG	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	178
BmuI	ACTGGG	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	204
Bpu14I	TTCGAA	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	184
Bse8I	GATNNNNATC	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	222
BseJI	GATNNNNATC	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	206
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	2 cut(s)	118, 166
BshFI	GGCC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	171
BsmI	GAATGC	2 cut(s)	57, 85
BsnI	GGCC	1 cut(s)	132
Bso31I	GGTCTC	1 cut(s)	171
Bsp119I	TTCGAA	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	2 cut(s)	34, 133
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	205
BspHI	TCATGA	1 cut(s)	263
BspPI	GGATC	1 cut(s)	254
BspT104I	TTCGAA	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	246
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	118, 166
BstV2I	GAAGAC	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	83
CciI	TCATGA	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	130
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	1 cut(s)	264
CviJI	RGCY	3 cut(s)	81, 132, 157
CviKI_1	RGCY	3 cut(s)	81, 132, 157
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	157
FaeI	CATG	1 cut(s)	267
FaiI	YATR	1 cut(s)	265
FatI	CATG	1 cut(s)	263
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	3 cut(s)	107, 133, 155
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	3 cut(s)	107, 133, 155
GluI	GCNGC	3 cut(s)	107, 133, 155
HaeIII	GGCC	1 cut(s)	132
HgaI	GACGC	1 cut(s)	31
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	267
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	2 cut(s)	190, 223
HphI	GGTGA	2 cut(s)	161, 223
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188III	TCNNGA	2 cut(s)	194, 264
Hpy8I	GTNNAC	1 cut(s)	189
HpyAV	CCTTC	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	246
LpnPI	CCDG	6 cut(s)	59, 95, 144, 171, 179, 197
Lsp1109I	GCAGC	2 cut(s)	118, 166
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	3 cut(s)	209, 232, 250
MluCI	AATT	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	5 cut(s)	17, 121, 146, 155, 207
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	159
Mva1269I	GAATGC	2 cut(s)	57, 85
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	43
NspV	TTCGAA	1 cut(s)	257
PagI	TCATGA	1 cut(s)	263
PctI	GAATGC	2 cut(s)	57, 85
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	3 cut(s)	108, 134, 156
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	130
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
SalI	GTCGAC	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	3 cut(s)	107, 133, 155
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	3 cut(s)	78, 83, 151
SfuI	TTCGAA	1 cut(s)	257
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	2 cut(s)	34, 133
StyD4I	CCNGG	1 cut(s)	157
TaqI	TCGA	3 cut(s)	188, 249, 257
TasI	AATT	1 cut(s)	259
TatI	WGTACW	1 cut(s)	175
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	106, 154
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	3 cut(s)	78, 233, 252
XapI	RAATTY	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.