Rh6AG230300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004843
Physical Location & Seq
Reverse (-)
41460007 .. 41460384
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG230300.1

Sequence Viewer

Length: 279 bp
ATGGAAGTGATCAAATCATCATCACTATCTGTAGAAGGAAAGCAAAGCGGAAGGGCGTCACTAAAGAAAGCATTCTTTCAGCATTTCAGGTCAGCTCGCATTCATCAAAAGAACAAGAGCAGCAGGAACAATCTACTAATTAGGGCCGCCTCTGTTTCAAAGGTGAGCAGCCAGGAGGGTCTTAATGTACTTTCCCAGTCGACTCAGGAAGACAATGGGGTGGTGAGGATGAAGATTCTTGTGAAAAGGAAGATTTGGAGCGAGTTTTCGAATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.32

Weight (kDa)

11.09

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 200
AciI CCGC 2 cut(s) 48, 147
AcsI RAATTY 1 cut(s) 271
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 1 cut(s) 189
AgsI TTSAA 1 cut(s) 159
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 120, 168
ApoI RAATTY 1 cut(s) 271
Asp700I GAANNNNTTC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 175, 235
AsuII TTCGAA 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 132, 180
BciT130I CCWGG 1 cut(s) 173
BclI TGATCA 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 3 cut(s) 121, 147, 169
BlsI GCNGC 3 cut(s) 122, 148, 170
Bme1390I CCNGG 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 173
BmrI ACTGGG 1 cut(s) 190
BmuI ACTGGG 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 196
BseXI GCAGC 2 cut(s) 132, 180
BshFI GGCC 1 cut(s) 146
BsmI GAATGC 2 cut(s) 71, 99
BsnI GGCC 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 269
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 2 cut(s) 48, 147
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 217
BspHI TCATGA 1 cut(s) 275
BspT104I TTCGAA 1 cut(s) 269
BsrI ACTGG 1 cut(s) 196
BssMI GATC 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 56
BstBI TTCGAA 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 234
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 132, 180
BstV2I GAAGAC 1 cut(s) 216
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 97
CciI TCATGA 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 144
CseI GACGC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 188
CviAII CATG 1 cut(s) 276
CviJI RGCY 3 cut(s) 95, 146, 171
CviKI_1 RGCY 3 cut(s) 95, 146, 171
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 171
FaeI CATG 1 cut(s) 279
FaiI YATR 1 cut(s) 277
FatI CATG 1 cut(s) 275
FbaI TGATCA 1 cut(s) 9
FblI GTMKAC 1 cut(s) 200
Fnu4HI GCNGC 3 cut(s) 121, 147, 169
FokI GGATG 1 cut(s) 241
Fsp4HI GCNGC 3 cut(s) 121, 147, 169
GluI GCNGC 3 cut(s) 121, 147, 169
HaeIII GGCC 1 cut(s) 146
HgaI GACGC 1 cut(s) 45
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 1 cut(s) 279
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HinfI GANTC 2 cut(s) 202, 235
HphI GGTGA 2 cut(s) 175, 235
Hpy166II GTNNAC 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 206, 276
Hpy8I GTNNAC 1 cut(s) 201
HpyAV CCTTC 2 cut(s) 29, 45
HpyF3I CTNAG 1 cut(s) 204
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 1 cut(s) 279
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 258
LpnPI CCDG 6 cut(s) 73, 109, 158, 185, 191, 209
Lsp1109I GCAGC 2 cut(s) 132, 180
MaeIII GTNAC 1 cut(s) 57
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 3 cut(s) 221, 244, 262
MluCI AATT 2 cut(s) 138, 271
MlyI GAGTC 1 cut(s) 196
MnlI CCTC 3 cut(s) 160, 169, 219
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 173
Mva1269I GAATGC 2 cut(s) 71, 99
MvaI CCWGG 1 cut(s) 173
NdeII GATC 1 cut(s) 9
NlaIII CATG 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 57
NspV TTCGAA 1 cut(s) 269
PagI TCATGA 1 cut(s) 275
PctI GAATGC 2 cut(s) 71, 99
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 235
PkrI GCNGC 3 cut(s) 122, 148, 170
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspPI GGNCC 1 cut(s) 144
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SalI GTCGAC 1 cut(s) 199
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 3 cut(s) 121, 147, 169
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 1 cut(s) 144
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 173
SetI ASST 3 cut(s) 92, 97, 165
SfcI CTRYAG 1 cut(s) 30
SfuI TTCGAA 1 cut(s) 269
Sse9I AATT 2 cut(s) 138, 271
SsiI CCGC 2 cut(s) 48, 147
StyD4I CCNGG 1 cut(s) 171
TaqI TCGA 2 cut(s) 200, 269
TasI AATT 2 cut(s) 138, 271
TatI WGTACW 1 cut(s) 187
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 2 cut(s) 120, 168
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 3 cut(s) 92, 245, 264
XapI RAATTY 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.