Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004843

Physical Location & Seq

Genomic Coordinates Reverse (-)

44159711 .. 44160345

Gene Structure 635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG235000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAAGAAATCAGGTTAGTTTCACAAGGAAAGGAGGGAAGAAAAGCATCGATGAAGAGTGCACTCCTCCGATACTTCAGATCACCTGGATTTCACCAGAAAAACAAGGGCAAGAACAATGTACTAATGAAGGTCCATACCATTGCAAGGGTGAACGGTATTAATGTAATTTCCCAATCAACTCAGGAAGACAATGAGATTGTTAGGATGAACATTTTAGTGAGAGAAGAAGATCTGGAGCATATTCTGGAACATATAAGGAACACCAACACCAACAACAACAATAATGACAAGAATAATAGTACTGACATTAATGGTGTAGATGACTACGAAGAAGTATCAGCAACATTATCGATAGCGGAGCGCCTAAATTTGTTGAGAAAAAAGCTTAGGCGCCAGAATACTTGGAGTCCTGCTCTGCAAACTATCCCAGAAGAAATTTCGCCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

17.25

Weight (kDa)

8.96

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15710 FvH4_2g15711 FvH4_2g15720 FvH4_2g15721
prunus_persica	Prupe.8G169600_v2.0.a1
pyrus_communis	pycom05g12070 pycom10g11060
rosa_laevigata	RLG00000013172 RLG00000013173 RLG00000013174 RLG00000013175
rosa_multiflora	Rmu_sc0002080.1_g000015
rosa_roxburghii	Rroxscaffold_7G00189200 Rroxscaffold_7G00189210
rosa_rugosa	Rorug06G0121000 Rorug06G0121100 Rorug06G0121200.1
rosa_samantha	Rh6AG229900 Rh6AG230000 Rh6AG230200 Rh6AG230300 Rh6BG235000 Rh6BG235100 Rh6BG235200 Rh6CG237000 Rh6CG237100 Rh6CG237300 Rh6DG228800 Rh6DG228900 Rh6DG229000 Rh6DG229100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	393
AciI	CCGC	1 cut(s)	359
AcsI	RAATTY	2 cut(s)	370, 438
AcuI	CTGAAG	1 cut(s)	61
AcyI	GRCGYC	1 cut(s)	394
AfaI	GTAC	2 cut(s)	123, 304
AfiI	CCNNNNNNNGG	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw21I	GWGCWC	1 cut(s)	64
Alw44I	GTGCAC	1 cut(s)	60
ApaLI	GTGCAC	1 cut(s)	60
ApoI	RAATTY	2 cut(s)	370, 438
AseI	ATTAAT	2 cut(s)	162, 312
AspLEI	GCGC	2 cut(s)	366, 396
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	3 cut(s)	75, 86, 163
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	64
BcgI	CGANNNNNNTGC	2 cut(s)	333, 367
BciT130I	CCWGG	1 cut(s)	87
BfoI	RGCGCY	2 cut(s)	367, 397
BglII	AGATCT	1 cut(s)	232
BmcAI	AGTACT	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	400, 432
BpmI	CTGGAG	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	389
Bsa29I	ATCGAT	2 cut(s)	50, 353
BsaHI	GRCGYC	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	87
BseCI	ATCGAT	2 cut(s)	50, 353
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	64
BshNI	GGYRCC	1 cut(s)	393
BshVI	ATCGAT	2 cut(s)	50, 353
BsiHKAI	GWGCWC	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	80, 232
BspACI	CCGC	1 cut(s)	359
BspCNI	CTCAG	1 cut(s)	196
BspDI	ATCGAT	2 cut(s)	50, 353
BspLI	GGNNCC	1 cut(s)	395
BspT107I	GGYRCC	1 cut(s)	393
BsrDI	GCAATG	1 cut(s)	141
BssMI	GATC	2 cut(s)	80, 232
BssNI	GRCGYC	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	394
BstDEI	CTNAG	2 cut(s)	183, 389
BstF5I	GGATG	1 cut(s)	213
BstH2I	RGCGCY	2 cut(s)	367, 397
BstHHI	GCGC	2 cut(s)	366, 396
BstKTI	GATC	2 cut(s)	83, 235
BstMBI	GATC	2 cut(s)	80, 232
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
Bsu15I	ATCGAT	2 cut(s)	50, 353
BsuTUI	ATCGAT	2 cut(s)	50, 353
BtsCI	GGATG	1 cut(s)	213
CfoI	GCGC	2 cut(s)	366, 396
Cfr13I	GGNCC	1 cut(s)	133
ClaI	ATCGAT	2 cut(s)	50, 353
Csp6I	GTAC	2 cut(s)	122, 303
CviJI	RGCY	1 cut(s)	388
CviKI_1	RGCY	1 cut(s)	388
CviQI	GTAC	2 cut(s)	122, 303
DdeI	CTNAG	2 cut(s)	183, 389
DinI	GGCGCC	1 cut(s)	395
DpnI	GATC	2 cut(s)	82, 234
DpnII	GATC	2 cut(s)	80, 232
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	85
EgeI	GGCGCC	1 cut(s)	395
EheI	GGCGCC	1 cut(s)	395
FaiI	YATR	4 cut(s)	138, 243, 255, 257
FokI	GGATG	1 cut(s)	220
GlaI	GCGC	2 cut(s)	365, 395
GsuI	CTGGAG	1 cut(s)	257
HaeII	RGCGCY	2 cut(s)	367, 397
HhaI	GCGC	2 cut(s)	366, 396
Hin1I	GRCGYC	1 cut(s)	394
Hin6I	GCGC	2 cut(s)	364, 394
HinP1I	GCGC	2 cut(s)	364, 394
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	1 cut(s)	409
HphI	GGTGA	3 cut(s)	75, 86, 163
Hpy166II	GTNNAC	2 cut(s)	62, 154
Hpy188I	TCNGA	2 cut(s)	71, 80
Hpy188III	TCNNGA	3 cut(s)	185, 236, 248
Hpy8I	GTNNAC	2 cut(s)	62, 154
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	3 cut(s)	62, 146, 421
HpyF3I	CTNAG	2 cut(s)	183, 389
Hsp92I	GRCGYC	1 cut(s)	394
HspAI	GCGC	2 cut(s)	364, 394
KasI	GGCGCC	1 cut(s)	393
Kzo9I	GATC	2 cut(s)	80, 232
LmnI	GCTCC	2 cut(s)	238, 361
LpnPI	CCDG	9 cut(s)	72, 99, 110, 170, 221, 233, 410, 426, 444
LweI	GCATC	1 cut(s)	56
MalI	GATC	2 cut(s)	82, 234
MboI	GATC	2 cut(s)	80, 232
MboII	GAAGA	8 cut(s)	17, 51, 67, 200, 239, 242, 344, 446
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	4 cut(s)	168, 370, 438, 448
Mly113I	GGCGCC	1 cut(s)	394
MlyI	GAGTC	1 cut(s)	418
MnlI	CCTC	2 cut(s)	28, 77
MseI	TTAA	3 cut(s)	162, 312, 451
MslI	CAYNNNNRTG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
NarI	GGCGCC	1 cut(s)	394
NdeII	GATC	2 cut(s)	80, 232
NlaIV	GGNNCC	1 cut(s)	395
PleI	GAGTC	1 cut(s)	417
PluTI	GGCGCC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	417
PshBI	ATTAAT	2 cut(s)	162, 312
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	395
PspPI	GGNCC	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	2 cut(s)	123, 304
RsaNI	GTAC	2 cut(s)	122, 303
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	162, 312, 451
Sau3AI	GATC	2 cut(s)	80, 232
Sau96I	GGNCC	1 cut(s)	133
ScaI	AGTACT	1 cut(s)	304
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	4 cut(s)	17, 88, 135, 390
SfaNI	GCATC	1 cut(s)	56
SfoI	GGCGCC	1 cut(s)	395
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	4 cut(s)	168, 370, 438, 448
SsiI	CCGC	1 cut(s)	359
SspDI	GGCGCC	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	2 cut(s)	50, 353
TasI	AATT	4 cut(s)	168, 370, 438, 448
TatI	WGTACW	2 cut(s)	121, 302
Tru1I	TTAA	3 cut(s)	162, 312, 451
Tru9I	TTAA	3 cut(s)	162, 312, 451
TspDTI	ATGAA	3 cut(s)	68, 143, 224
VneI	GTGCAC	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	133
VspI	ATTAAT	2 cut(s)	162, 312
XapI	RAATTY	2 cut(s)	370, 438
ZrmI	AGTACT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.