FvH4_2g18400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002397
Physical Location & Seq
Reverse (-)
15768601 .. 15769287
687 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18400.t1

Sequence Viewer

Length: 324 bp
ATGGATGGTTTTGAGACTTGCTATTATTTTGTACAAAGAAACTATGTTTGCATTACAACCAAGAAAGCAGCTGAAGCTGGAGAAGGAACATCTGCTGGTGGAGCAAGCACTAAGAAAAGAGTGAGAGCAAAGGTCCAAAGGGCACCAGCCCCACCCAAGGAATCAAGACATATCAAGGACCAGGTCATAACGTCTAAAAAGGGATGGAAGAAAATGAAGTTGGCAATGGAGGGTAGTTCTGCTGGAAATGGTAGTGGATCAGCTTCAACACAGCCTCCTACTCAAAGCAGCCAAAATCATGCAGCAAGGTGTTCTACAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.44

Weight (kDa)

10.02

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AclWI GGATC 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 1 cut(s) 267
AjnI CCWGG 1 cut(s) 180
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 3 cut(s) 71, 77, 263
AluI AGCT 3 cut(s) 71, 77, 263
Alw26I GTCTC 1 cut(s) 8
AlwI GGATC 1 cut(s) 265
ApeKI GCWGC 3 cut(s) 68, 288, 302
AspS9I GGNCC 2 cut(s) 133, 178
AvaII GGWCC 2 cut(s) 133, 178
BaeGI GKGCMC 1 cut(s) 145
BanI GGYRCC 1 cut(s) 142
BbvI GCAGC 3 cut(s) 80, 300, 314
BccI CCATC 1 cut(s) 198
BciT130I CCWGG 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 8
BisI GCNGC 3 cut(s) 69, 289, 303
BlsI GCNGC 3 cut(s) 70, 290, 304
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 2 cut(s) 133, 178
BmgT120I GGNCC 2 cut(s) 133, 178
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 2 cut(s) 10, 209
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMI GCAATG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 145
BseXI GCAGC 3 cut(s) 80, 300, 314
BshNI GGYRCC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 145
Bsp1407I TGTACA 1 cut(s) 31
Bsp143I GATC 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 1 cut(s) 265
BspT107I GGYRCC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 231
BsrGI TGTACA 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 182
BstAUI TGTACA 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 10, 209
BstKTI GATC 1 cut(s) 260
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 1 cut(s) 257
BstMWI GCNNNNNNNGC 2 cut(s) 74, 101
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 145
BstV1I GCAGC 3 cut(s) 80, 300, 314
BtsCI GGATG 2 cut(s) 10, 209
Cac8I GCNNGC 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 133, 178
CsiI ACCWGGT 1 cut(s) 180
Csp6I GTAC 1 cut(s) 32
CviAII CATG 1 cut(s) 299
CviJI RGCY 6 cut(s) 71, 77, 149, 263, 274, 291
CviKI_1 RGCY 6 cut(s) 71, 77, 149, 263, 274, 291
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 1 cut(s) 111
DpnI GATC 1 cut(s) 259
DpnII GATC 1 cut(s) 257
Eco130I CCWWGG 1 cut(s) 156
Eco47I GGWCC 2 cut(s) 133, 178
Eco57I CTGAAG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 1 cut(s) 302
FaiI YATR 4 cut(s) 45, 171, 188, 300
FatI CATG 1 cut(s) 298
Fnu4HI GCNGC 3 cut(s) 69, 289, 303
FokI GGATG 2 cut(s) 17, 216
Fsp4HI GCNGC 3 cut(s) 69, 289, 303
GluI GCNGC 3 cut(s) 69, 289, 303
GsuI CTGGAG 1 cut(s) 99
Hin1II CATG 1 cut(s) 302
HinfI GANTC 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 165
HpyAV CCTTC 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 51, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 101
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 1 cut(s) 302
Kzo9I GATC 1 cut(s) 257
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 6 cut(s) 63, 81, 159, 167, 194, 228
Lsp1109I GCAGC 3 cut(s) 80, 300, 314
MabI ACCWGGT 1 cut(s) 180
MaeII ACGT 1 cut(s) 191
MalI GATC 1 cut(s) 259
MboI GATC 1 cut(s) 257
MboII GAAGA 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 145
MnlI CCTC 2 cut(s) 223, 285
MspA1I CMGCKG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 74, 101
NdeII GATC 1 cut(s) 257
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 161
PflFI GACNNNGTC 1 cut(s) 182
PkrI GCNGC 3 cut(s) 70, 290, 304
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 2 cut(s) 133, 178
PsyI GACNNNGTC 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SatI GCNGC 3 cut(s) 69, 289, 303
Sau3AI GATC 1 cut(s) 257
Sau96I GGNCC 2 cut(s) 133, 178
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 145
SetI ASST 7 cut(s) 73, 79, 135, 186, 194, 265, 311
SexAI ACCWGGT 1 cut(s) 180
SinI GGWCC 2 cut(s) 133, 178
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 156
TaiI ACGT 1 cut(s) 194
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 1 cut(s) 161
TseI GCWGC 3 cut(s) 68, 288, 302
TspDTI ATGAA 1 cut(s) 230
Tth111I GACNNNGTC 1 cut(s) 182
VpaK11BI GGWCC 2 cut(s) 133, 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.