Rroxscaffold_1G00012010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002397
Physical Location & Seq
Forward (+)
14931238 .. 14933373
2136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00012010.1

Sequence Viewer

Length: 471 bp
ATGAGATACATTGTTTTATTAGAAGAGCGACTTGCTTCACTTGAGGGTGAGAGACAACCTTCTACACATGATGTGGATGAAGAGGGAGTCGAGGAGGATAATGTGGATGAGGAGAATGATGAGGATGTGGAGAATGATGAGGATGAGGATTTGGATGCACCAAGAGTTTCAAGTTCAAATGGTAAGAGAAATGGTAATGGTAGCTTGAAGGAACAAATCATCAAGTCTAGGAAGGCTTGGAAGAAGATGAAGACCATGGAGGGAAACCAAGCTGCCAATACAAGAGCTTCTAGTTCACAAACCATGCATAAACCTCCAACTCAAGCTAGCCAAAACCCTACAGCAAGAAAGACACAGCAAAAAAGTCAACCTCAATCGGAATCGAGAATATGGAGGATTTTGAGGCAAGTTGTGAAGATCCCCCCAAGTTTTTGTTACATGTTTGTAGGCCTATGGTGTATTGAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.86

Weight (kDa)

5.19

Isoelectric Point (pI)

59.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 412
AflIII ACRYGT 1 cut(s) 438
AgsI TTSAA 4 cut(s) 171, 177, 208, 464
AluBI AGCT 4 cut(s) 204, 272, 287, 326
AluI AGCT 4 cut(s) 204, 272, 287, 326
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 1 cut(s) 412
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 59
AsuNHI GCTAGC 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 3 cut(s) 228, 291, 327
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
BmsI GCATC 1 cut(s) 145
BmtI GCTAGC 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 257
BpuEI CTTGAG 2 cut(s) 62, 306
BsaJI CCNNGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 5 cut(s) 82, 112, 130, 148, 160
BseRI GAGGAG 2 cut(s) 107, 125
BseXI GCAGC 1 cut(s) 259
BshFI GGCC 1 cut(s) 450
BsmAI GTCTC 1 cut(s) 46
BsnI GGCC 1 cut(s) 450
Bsp143I GATC 1 cut(s) 417
Bsp19I CCATGG 1 cut(s) 255
BspANI GGCC 1 cut(s) 450
BspOI GCTAGC 1 cut(s) 330
BspPI GGATC 1 cut(s) 412
BspQI GCTCTTC 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 1 cut(s) 417
BssT1I CCWWGG 1 cut(s) 255
Bst6I CTCTTC 2 cut(s) 18, 75
BstC8I GCNNGC 1 cut(s) 328
BstDSI CCRYGG 1 cut(s) 255
BstF5I GGATG 5 cut(s) 82, 112, 130, 148, 160
BstKTI GATC 1 cut(s) 420
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 1 cut(s) 417
BstNSI RCATGY 1 cut(s) 442
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 1 cut(s) 417
BstYI RGATCY 1 cut(s) 417
BsuRI GGCC 1 cut(s) 450
BtgI CCRYGG 1 cut(s) 255
BtsCI GGATG 5 cut(s) 82, 112, 130, 148, 160
Cac8I GCNNGC 1 cut(s) 328
CviAII CATG 4 cut(s) 68, 256, 304, 439
CviJI RGCY 7 cut(s) 204, 236, 272, 287, 326, 330, 450
CviKI_1 RGCY 7 cut(s) 204, 236, 272, 287, 326, 330, 450
DpnI GATC 1 cut(s) 419
DpnII GATC 1 cut(s) 417
Eam1104I CTCTTC 2 cut(s) 18, 75
EarI CTCTTC 2 cut(s) 18, 75
Eco130I CCWWGG 1 cut(s) 255
Eco147I AGGCCT 1 cut(s) 450
EcoT14I CCWWGG 1 cut(s) 255
EcoT22I ATGCAT 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 4 cut(s) 71, 259, 307, 442
FaiI YATR 7 cut(s) 69, 257, 305, 309, 391, 440, 454
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FatI CATG 4 cut(s) 67, 255, 303, 438
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 5 cut(s) 89, 119, 137, 155, 167
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 3 cut(s) 228, 291, 327
GluI GCNGC 1 cut(s) 273
HaeIII GGCC 1 cut(s) 450
Hin1II CATG 4 cut(s) 71, 259, 307, 442
HincII GTYRAC 1 cut(s) 368
HindII GTYRAC 1 cut(s) 368
HinfI GANTC 2 cut(s) 87, 380
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 2 cut(s) 296, 368
Hpy188I TCNGA 1 cut(s) 379
Hpy188III TCNNGA 1 cut(s) 384
Hpy8I GTNNAC 2 cut(s) 296, 368
HpyAV CCTTC 3 cut(s) 69, 202, 226
HpyCH4V TGCA 2 cut(s) 158, 307
Hsp92II CATG 4 cut(s) 71, 259, 307, 442
Kzo9I GATC 1 cut(s) 417
LguI GCTCTTC 1 cut(s) 18
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 1 cut(s) 145
MaeI CTAG 3 cut(s) 228, 291, 327
MaeIII GTNAC 1 cut(s) 434
MalI GATC 1 cut(s) 419
MboI GATC 1 cut(s) 417
MboII GAAGA 6 cut(s) 35, 92, 253, 256, 262, 427
MflI RGATCY 1 cut(s) 417
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 341
Mph1103I ATGCAT 1 cut(s) 309
NcoI CCATGG 1 cut(s) 255
NdeII GATC 1 cut(s) 417
NheI GCTAGC 1 cut(s) 326
NlaIII CATG 4 cut(s) 71, 259, 307, 442
NsiI ATGCAT 1 cut(s) 309
NspI RCATGY 1 cut(s) 442
PceI AGGCCT 1 cut(s) 450
PciI ACATGT 1 cut(s) 438
PciSI GCTCTTC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 380
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PscI ACATGT 1 cut(s) 438
PsuI RGATCY 1 cut(s) 417
SapI GCTCTTC 1 cut(s) 18
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 1 cut(s) 417
SchI GAGTC 1 cut(s) 96
SetI ASST 7 cut(s) 61, 206, 274, 289, 316, 328, 373
SfaNI GCATC 1 cut(s) 145
SfcI CTRYAG 1 cut(s) 339
SmlI CTYRAG 2 cut(s) 41, 321
SmoI CTYRAG 2 cut(s) 41, 321
SseBI AGGCCT 1 cut(s) 450
SspMI CTAG 3 cut(s) 228, 291, 327
StuI AGGCCT 1 cut(s) 450
StyI CCWWGG 1 cut(s) 255
TaqI TCGA 2 cut(s) 90, 383
TfiI GAWTC 1 cut(s) 380
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 93, 263
XceI RCATGY 1 cut(s) 442
XspI CTAG 3 cut(s) 228, 291, 327
Zsp2I ATGCAT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.