No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g16320 FvH4_2g18400 FvH4_3g43980 FvH4_4g33840 FvH4_5g24170 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_6g31070 FvH4_6g34392 FvH4_6g39960 FvH4_6g54252 FvH4_7g14550 |
| rosa_multiflora | Rmu_sc0000493.1_g000079 |
| rosa_roxburghii | Rroxscaffold_156G00440260 Rroxscaffold_1G00012010 Rroxscaffold_3G00245190 Rroxscaffold_5G00364260 Rroxscaffold_6G00394000 |
| rosa_rugosa | Rorug02G0526600 Rorug04G0297300 Rorug05G0393500 Rorug06G0196700 |
| rosa_samantha | Rh1BG304600 Rh2CG414500 Rh2CG442900 Rh3AG287600 Rh3DG234900 Rh3DG253000 Rh3DG371300 Rh4BG116300 Rh4BG181700 Rh4BG256900 Rh4BG360600 Rh5CG403100 Rh5CG480500 Rh6DG117000 Rh6DG266300 Rh6DG307200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 19 |
| AdeI | CACNNNGTG | 1 cut(s) | 272 |
| AfaI | GTAC | 1 cut(s) | 235 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 372 |
| AgsI | TTSAA | 1 cut(s) | 175 |
| AhlI | ACTAGT | 1 cut(s) | 227 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 148, 180 |
| AluBI | AGCT | 3 cut(s) | 65, 263, 362 |
| AluI | AGCT | 3 cut(s) | 65, 263, 362 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 80 |
| AoxI | GGCC | 1 cut(s) | 19 |
| ApeKI | GCWGC | 5 cut(s) | 62, 71, 74, 277, 311 |
| AspS9I | GGNCC | 1 cut(s) | 178 |
| AvaII | GGWCC | 1 cut(s) | 178 |
| BalI | TGGCCA | 1 cut(s) | 21 |
| BbvCI | CCTCAGC | 1 cut(s) | 259 |
| BbvI | GCAGC | 5 cut(s) | 74, 83, 86, 289, 298 |
| BcuI | ACTAGT | 1 cut(s) | 227 |
| BfaI | CTAG | 2 cut(s) | 105, 228 |
| BisI | GCNGC | 5 cut(s) | 63, 72, 75, 278, 312 |
| BlsI | GCNGC | 5 cut(s) | 64, 73, 76, 279, 313 |
| Bme18I | GGWCC | 1 cut(s) | 178 |
| BmgT120I | GGNCC | 1 cut(s) | 178 |
| BmsI | GCATC | 1 cut(s) | 155 |
| Bpu10I | CCTNAGC | 2 cut(s) | 66, 259 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 372 |
| Bse1I | ACTGG | 1 cut(s) | 85 |
| BseGI | GGATG | 1 cut(s) | 335 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 372 |
| BseMII | CTCAG | 1 cut(s) | 273 |
| BseNI | ACTGG | 1 cut(s) | 85 |
| BseXI | GCAGC | 5 cut(s) | 74, 83, 86, 289, 298 |
| BseYI | CCCAGC | 1 cut(s) | 339 |
| BsgI | GTGCAG | 1 cut(s) | 296 |
| BshFI | GGCC | 1 cut(s) | 21 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 372 |
| BsnI | GGCC | 1 cut(s) | 21 |
| BspANI | GGCC | 1 cut(s) | 21 |
| BspCNI | CTCAG | 1 cut(s) | 272 |
| BsrI | ACTGG | 1 cut(s) | 85 |
| Bst4CI | ACNGT | 1 cut(s) | 244 |
| Bst6I | CTCTTC | 1 cut(s) | 113 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 320 |
| BstDEI | CTNAG | 3 cut(s) | 66, 259, 293 |
| BstF5I | GGATG | 1 cut(s) | 335 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 68, 71, 320 |
| BstV1I | GCAGC | 5 cut(s) | 74, 83, 86, 289, 298 |
| BsuRI | GGCC | 1 cut(s) | 21 |
| BtsCI | GGATG | 1 cut(s) | 335 |
| CaiI | CAGNNNCTG | 1 cut(s) | 80 |
| Cfr13I | GGNCC | 1 cut(s) | 178 |
| Csp6I | GTAC | 1 cut(s) | 234 |
| CviJI | RGCY | 6 cut(s) | 21, 65, 136, 263, 343, 362 |
| CviKI_1 | RGCY | 6 cut(s) | 21, 65, 136, 263, 343, 362 |
| CviQI | GTAC | 1 cut(s) | 234 |
| DdeI | CTNAG | 3 cut(s) | 66, 259, 293 |
| DraIII | CACNNNGTG | 1 cut(s) | 272 |
| EaeI | YGGCCR | 1 cut(s) | 19 |
| Eam1104I | CTCTTC | 1 cut(s) | 113 |
| EarI | CTCTTC | 1 cut(s) | 113 |
| Eco47I | GGWCC | 1 cut(s) | 178 |
| FaiI | YATR | 6 cut(s) | 16, 188, 325, 327, 347, 403 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 187, 219, 346, 378 |
| Fnu4HI | GCNGC | 5 cut(s) | 63, 72, 75, 278, 312 |
| FokI | GGATG | 1 cut(s) | 322 |
| Fsp4HI | GCNGC | 5 cut(s) | 63, 72, 75, 278, 312 |
| FspBI | CTAG | 2 cut(s) | 105, 228 |
| GluI | GCNGC | 5 cut(s) | 63, 72, 75, 278, 312 |
| GsaI | CCCAGC | 1 cut(s) | 343 |
| HaeIII | GGCC | 1 cut(s) | 21 |
| HindIII | AAGCTT | 1 cut(s) | 360 |
| Hpy188I | TCNGA | 1 cut(s) | 370 |
| Hpy188III | TCNNGA | 1 cut(s) | 195 |
| HpyAV | CCTTC | 2 cut(s) | 169, 211 |
| HpyCH4III | ACNGT | 1 cut(s) | 244 |
| HpyCH4V | TGCA | 4 cut(s) | 277, 314, 323, 349 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 68, 71, 320 |
| HpyF3I | CTNAG | 3 cut(s) | 66, 259, 293 |
| LmnI | GCTCC | 1 cut(s) | 95 |
| LpnPI | CCDG | 4 cut(s) | 66, 321, 353, 363 |
| Lsp1109I | GCAGC | 5 cut(s) | 74, 83, 86, 289, 298 |
| LweI | GCATC | 1 cut(s) | 155 |
| MaeI | CTAG | 2 cut(s) | 105, 228 |
| MaeIII | GTNAC | 1 cut(s) | 107 |
| MboII | GAAGA | 3 cut(s) | 130, 220, 223 |
| MlsI | TGGCCA | 1 cut(s) | 21 |
| MluNI | TGGCCA | 1 cut(s) | 21 |
| MnlI | CCTC | 4 cut(s) | 268, 294, 311, 376 |
| Mox20I | TGGCCA | 1 cut(s) | 21 |
| MscI | TGGCCA | 1 cut(s) | 21 |
| Msp20I | TGGCCA | 1 cut(s) | 21 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 68, 71, 320 |
| PkrI | GCNGC | 5 cut(s) | 64, 73, 76, 279, 313 |
| PspFI | CCCAGC | 1 cut(s) | 339 |
| PspPI | GGNCC | 1 cut(s) | 178 |
| PstNI | CAGNNNCTG | 1 cut(s) | 80 |
| RsaI | GTAC | 1 cut(s) | 235 |
| RsaNI | GTAC | 1 cut(s) | 234 |
| SatI | GCNGC | 5 cut(s) | 63, 72, 75, 278, 312 |
| Sau96I | GGNCC | 1 cut(s) | 178 |
| SetI | ASST | 7 cut(s) | 46, 67, 194, 265, 286, 322, 364 |
| SfaNI | GCATC | 1 cut(s) | 155 |
| SinI | GGWCC | 1 cut(s) | 178 |
| SpeI | ACTAGT | 1 cut(s) | 227 |
| SspMI | CTAG | 2 cut(s) | 105, 228 |
| TaaI | ACNGT | 1 cut(s) | 244 |
| TseI | GCWGC | 5 cut(s) | 62, 71, 74, 277, 311 |
| TspDTI | ATGAA | 2 cut(s) | 75, 230 |
| VpaK11BI | GGWCC | 1 cut(s) | 178 |
| XspI | CTAG | 2 cut(s) | 105, 228 |