Rorug06G0196700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002397
Physical Location & Seq
Forward (+)
31702830 .. 31703791
962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0196700.1

Sequence Viewer

Length: 600 bp
ATGGTGCCTCTGGGAAGAATCTTAACAAATGAACAAAGACACCAGAGGCACCTTGCTGCTGACCTATCATGTTATTACTGTAGTGGCCAAGTGGAGACTCTAACTCATCTCCTAAGAGACTGCAAAAAAGCTAAGCAGGTTTGGCAAGCTTTCAATATTCCTTTACCTATGCAAGCTACCTTTGTTTTAGACTTGAGGAGTTGGATTTTTGCAAATTTGCTCCAGAGAAATATTAACTATTATGATATTCAGTGGAATTTATTCTTTATTTTCTGCTGTTGGTTCATTTGGAAATGGTGCTGCAAGGGAATTTTTGAACCAAGTTTTTGTGTTCCCTTTAACTTTCTTAATGTGATCCTTGGATATGTGTATGAATGGTTTAAAGCAAGTCAAAAGCCTATTCCCTCTAGAAGTGTTCATGTAGAGTTGCTATCTTGGAACAAACCTATGGCTGGTCATTTCAAACTTAATGTTGATGGTTCAAAATCAGGAAATGGAAGCATTGGTGCTGGTGGTCTCATTAGAGACTCCTCTGGTAACTGGATTAGTGGCTTCATGTGCAATATTGGGTTTGGAGAAGTTTTGCAAGCTGAAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.89

Weight (kDa)

8.74

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 5 - 48 3.2e-08 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 127
AccB1I GGYRCC 2 cut(s) 4, 48
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 3 cut(s) 214, 256, 309
AfiI CCNNNNNNNGG 1 cut(s) 452
AgsI TTSAA 4 cut(s) 154, 317, 463, 483
AluBI AGCT 4 cut(s) 131, 149, 176, 590
AluI AGCT 4 cut(s) 131, 149, 176, 590
Alw26I GTCTC 4 cut(s) 89, 111, 519, 521
AlwI GGATC 1 cut(s) 349
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 56, 300
ApoI RAATTY 3 cut(s) 214, 256, 309
Asp700I GAANNNNTTC 1 cut(s) 260
BalI TGGCCA 1 cut(s) 87
BanI GGYRCC 2 cut(s) 4, 48
BbvI GCAGC 2 cut(s) 43, 287
BccI CCATC 1 cut(s) 470
BcoDI GTCTC 4 cut(s) 89, 111, 519, 521
BfaI CTAG 2 cut(s) 408, 598
BfmI CTRYAG 1 cut(s) 79
BfuAI ACCTGC 1 cut(s) 127
BisI GCNGC 2 cut(s) 57, 301
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 2 cut(s) 58, 302
BmiI GGNNCC 2 cut(s) 6, 50
BpmI CTGGAG 1 cut(s) 206
Bpu1102I GCTNAGC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 214
BsaI GGTCTC 1 cut(s) 521
BsaJI CCNNGG 1 cut(s) 358
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse1I ACTGG 1 cut(s) 545
BseDI CCNNGG 1 cut(s) 358
BseLI CCNNNNNNNGG 1 cut(s) 452
BseNI ACTGG 1 cut(s) 545
BseRI GAGGAG 2 cut(s) 211, 520
BseXI GCAGC 2 cut(s) 43, 287
BshFI GGCC 1 cut(s) 87
BshNI GGYRCC 2 cut(s) 4, 48
BslI CCNNNNNNNGG 1 cut(s) 452
BsmAI GTCTC 4 cut(s) 89, 111, 519, 521
BsnI GGCC 1 cut(s) 87
Bso31I GGTCTC 1 cut(s) 521
Bsp143I GATC 1 cut(s) 354
Bsp1720I GCTNAGC 1 cut(s) 132
BspANI GGCC 1 cut(s) 87
BspLI GGNNCC 2 cut(s) 6, 50
BspMI ACCTGC 1 cut(s) 127
BspPI GGATC 1 cut(s) 349
BspT107I GGYRCC 2 cut(s) 4, 48
BspTNI GGTCTC 1 cut(s) 521
BsrI ACTGG 1 cut(s) 545
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 358
Bst4CI ACNGT 1 cut(s) 80
BstC8I GCNNGC 3 cut(s) 147, 174, 588
BstDEI CTNAG 2 cut(s) 113, 132
BstKTI GATC 1 cut(s) 357
BstMAI GTCTC 4 cut(s) 89, 111, 519, 521
BstMBI GATC 1 cut(s) 354
BstMWI GCNNNNNNNGC 2 cut(s) 142, 558
BstSFI CTRYAG 1 cut(s) 79
BstV1I GCAGC 2 cut(s) 43, 287
BsuRI GGCC 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 257
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 3 cut(s) 147, 174, 588
CviAII CATG 3 cut(s) 69, 419, 556
CviJI RGCY 9 cut(s) 87, 131, 149, 176, 397, 452, 552, 590, 596
CviKI_1 RGCY 9 cut(s) 87, 131, 149, 176, 397, 452, 552, 590, 596
DdeI CTNAG 2 cut(s) 113, 132
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
DraI TTTAAA 1 cut(s) 382
EaeI YGGCCR 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 358
Eco31I GGTCTC 1 cut(s) 521
EcoT14I CCWWGG 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 3 cut(s) 72, 422, 559
FaiI YATR 8 cut(s) 70, 170, 243, 366, 372, 420, 449, 557
FatI CATG 3 cut(s) 68, 418, 555
Fnu4HI GCNGC 2 cut(s) 57, 301
Fsp4HI GCNGC 2 cut(s) 57, 301
FspBI CTAG 2 cut(s) 408, 598
GluI GCNGC 2 cut(s) 57, 301
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 1 cut(s) 87
Hin1II CATG 3 cut(s) 72, 422, 559
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 3 cut(s) 18, 97, 527
Hpy188III TCNNGA 3 cut(s) 223, 408, 489
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 6 cut(s) 123, 172, 212, 303, 561, 586
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 558
HpyF3I CTNAG 2 cut(s) 113, 132
Hsp92II CATG 3 cut(s) 72, 422, 559
Kzo9I GATC 1 cut(s) 354
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 8 cut(s) 56, 122, 236, 438, 474, 495, 519, 526
Lsp1109I GCAGC 2 cut(s) 43, 287
MaeI CTAG 2 cut(s) 408, 598
MaeIII GTNAC 1 cut(s) 536
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MboII GAAGA 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 3 cut(s) 214, 256, 309
MluNI TGGCCA 1 cut(s) 87
MlyI GAGTC 2 cut(s) 91, 521
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 5 cut(s) 18, 39, 189, 415, 541
Mox20I TGGCCA 1 cut(s) 87
MroXI GAANNNNTTC 1 cut(s) 260
MscI TGGCCA 1 cut(s) 87
MseI TTAA 6 cut(s) 23, 234, 339, 348, 381, 468
Msp20I TGGCCA 1 cut(s) 87
MwoI GCNNNNNNNGC 2 cut(s) 142, 558
NdeII GATC 1 cut(s) 354
NlaIII CATG 3 cut(s) 72, 422, 559
NlaIV GGNNCC 2 cut(s) 6, 50
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 2 cut(s) 58, 302
PleI GAGTC 2 cut(s) 91, 521
PpsI GAGTC 2 cut(s) 91, 521
PspN4I GGNNCC 2 cut(s) 6, 50
SaqAI TTAA 6 cut(s) 23, 234, 339, 348, 381, 468
SatI GCNGC 2 cut(s) 57, 301
Sau3AI GATC 1 cut(s) 354
SchI GAGTC 2 cut(s) 91, 521
SfcI CTRYAG 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 3 cut(s) 214, 256, 309
SspI AATATT 3 cut(s) 157, 232, 565
SspMI CTAG 2 cut(s) 408, 598
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 80
TasI AATT 3 cut(s) 214, 256, 309
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 6 cut(s) 23, 234, 339, 348, 381, 468
Tru9I TTAA 6 cut(s) 23, 234, 339, 348, 381, 468
TscAI CASTG 1 cut(s) 257
TseI GCWGC 2 cut(s) 56, 300
TspDTI ATGAA 5 cut(s) 45, 274, 387, 407, 544
TspRI CASTG 1 cut(s) 257
XapI RAATTY 3 cut(s) 214, 256, 309
XbaI TCTAGA 1 cut(s) 407
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 2 cut(s) 408, 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.