FvH4_5g26770

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT3G56590.2)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002397
Physical Location & Seq
Reverse (-)
18168044 .. 18170318
2275 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26770.t1

Sequence Viewer

Length: 297 bp
ATGCCAAAGAATCGATTAAGCTCGGTGAATTTCATGTACCTGTCAAGAATTAGGTGTCACGTCCCCATCCCAACCGCACTAGCCATGAATGTGGCAACTGATGCAGGTGGCTATTTTGTCAATAGGTGGCTATTTTGTCCATGCACCAAAATAGTGCATCTAACTGGACTGATGTGGTGTTTGGTGTCTTCTGATCCGGTGAATGTTCCGATACTTCCAGTGTCCATAAGTGTGCTGAGATCATCTTTGGTTGAGCTGTTCCTTAAGCAATCAACGTTTGGACGACATGAACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.05

Weight (kDa)

9.69

Isoelectric Point (pI)

65.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 95
AciI CCGC 1 cut(s) 75
AclI AACGTT 2 cut(s) 275, 292
AclWI GGATC 1 cut(s) 188
AcsI RAATTY 1 cut(s) 28
AfaI GTAC 1 cut(s) 38
AflII CTTAAG 1 cut(s) 263
AjiI CACGTC 1 cut(s) 61
AluBI AGCT 2 cut(s) 21, 256
AluI AGCT 2 cut(s) 21, 256
AlwI GGATC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 28
AsuHPI GGTGA 2 cut(s) 37, 211
BbsI GAAGAC 1 cut(s) 180
BccI CCATC 1 cut(s) 74
BfaI CTAG 1 cut(s) 80
BfrI CTTAAG 1 cut(s) 263
BfuAI ACCTGC 1 cut(s) 95
BmgBI CACGTC 1 cut(s) 61
BmsI GCATC 2 cut(s) 91, 166
BpiI GAAGAC 1 cut(s) 180
Bsa29I ATCGAT 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 196
Bse1I ACTGG 2 cut(s) 169, 218
BseCI ATCGAT 1 cut(s) 13
BseGI GGATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 227
BseNI ACTGG 2 cut(s) 169, 218
BshVI ATCGAT 1 cut(s) 13
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 47
Bsp143I GATC 2 cut(s) 193, 239
BspACI CCGC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 228
BspDI ATCGAT 1 cut(s) 13
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 1 cut(s) 188
BspTI CTTAAG 1 cut(s) 263
BsrI ACTGG 2 cut(s) 169, 218
BssMI GATC 2 cut(s) 193, 239
BstAFI CTTAAG 1 cut(s) 263
BstAPI GCANNNNNTGC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 236
BstF5I GGATG 1 cut(s) 66
BstKTI GATC 2 cut(s) 196, 242
BstMBI GATC 2 cut(s) 193, 239
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstV2I GAAGAC 1 cut(s) 180
BstXI CCANNNNNNTGG 1 cut(s) 91
Bsu15I ATCGAT 1 cut(s) 13
BsuTUI ATCGAT 1 cut(s) 13
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 225
BveI ACCTGC 1 cut(s) 95
ClaI ATCGAT 1 cut(s) 13
Csp6I GTAC 1 cut(s) 37
CviAII CATG 4 cut(s) 34, 85, 141, 287
CviJI RGCY 5 cut(s) 21, 83, 111, 130, 256
CviKI_1 RGCY 5 cut(s) 21, 83, 111, 130, 256
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 1 cut(s) 236
DpnI GATC 2 cut(s) 195, 241
DpnII GATC 2 cut(s) 193, 239
FaeI CATG 4 cut(s) 37, 88, 144, 290
FaiI YATR 5 cut(s) 35, 86, 142, 227, 288
FaqI GGGAC 1 cut(s) 47
FatI CATG 4 cut(s) 33, 84, 140, 286
FokI GGATG 1 cut(s) 53
FspBI CTAG 1 cut(s) 80
HapII CCGG 1 cut(s) 197
Hin1II CATG 4 cut(s) 37, 88, 144, 290
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 197
HphI GGTGA 2 cut(s) 37, 211
Hpy188I TCNGA 2 cut(s) 193, 210
Hpy188III TCNNGA 1 cut(s) 45
HpyCH4IV ACGT 3 cut(s) 60, 275, 292
HpyCH4V TGCA 3 cut(s) 104, 144, 157
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 3 cut(s) 60, 275, 292
Hsp92II CATG 4 cut(s) 37, 88, 144, 290
Kzo9I GATC 2 cut(s) 193, 239
LpnPI CCDG 5 cut(s) 53, 90, 150, 210, 231
LweI GCATC 2 cut(s) 91, 166
MaeI CTAG 1 cut(s) 80
MaeII ACGT 3 cut(s) 60, 275, 292
MaeIII GTNAC 1 cut(s) 56
MalI GATC 2 cut(s) 195, 241
MboI GATC 2 cut(s) 193, 239
MboII GAAGA 1 cut(s) 180
MluCI AATT 2 cut(s) 28, 48
MseI TTAA 2 cut(s) 17, 264
MslI CAYNNNNRTG 2 cut(s) 89, 230
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 2 cut(s) 193, 239
NlaIII CATG 4 cut(s) 37, 88, 144, 290
NmuCI GTSAC 1 cut(s) 56
PaqCI CACCTGC 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 289
PfeI GAWTC 1 cut(s) 10
Psp1406I AACGTT 2 cut(s) 275, 292
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 2 cut(s) 89, 230
SaqAI TTAA 2 cut(s) 17, 264
Sau3AI GATC 2 cut(s) 193, 239
SetI ASST 9 cut(s) 23, 42, 56, 63, 109, 128, 258, 278, 295
SfaNI GCATC 2 cut(s) 91, 166
SmiMI CAYNNNNRTG 2 cut(s) 89, 230
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 2 cut(s) 28, 48
SsiI CCGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 80
TaiI ACGT 3 cut(s) 63, 278, 295
TaqI TCGA 1 cut(s) 13
TasI AATT 2 cut(s) 28, 48
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 2 cut(s) 17, 264
Tru9I TTAA 2 cut(s) 17, 264
TscAI CASTG 1 cut(s) 225
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 22, 101
TspRI CASTG 1 cut(s) 225
Vha464I CTTAAG 1 cut(s) 263
XapI RAATTY 1 cut(s) 28
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.