FvH4_6g31070

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT3G56590.2)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002397
Physical Location & Seq
Forward (+)
24246902 .. 24248993
2092 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31070.t1

Sequence Viewer

Length: 483 bp
ATGTTCCAGATTCTTGAACAGAATCGCCCAGGAGTTCAGCTTCCGATGCGTCTTCGTTTAATTCTCGGCTTCTCGGTTTTCCTCTCCGGGATCTTCTGGATCCTTCCTCGCCATTCCGTCAATTCTGGGTTCGATGCCAAAGAATCGATTAAGCTCGGTGATGCAGGTGGCTATTTTGTCAACAGGTGGCTATTTTGTCCATGCACCAAAATAGTGCATCTAACTGGACTGATGTGGTGTTTGGTGTCTTCTGATCCGGTCCAAAGGGCACCAGCCCCACCCAAGGAATCAAGACCTATCAAGGACCAGGTCATAAAGTCTAGAAAGGGATGGAAGAAAATGAAGTTGGCAATGGAGGGTAGTTCTGCTGGAAATGGTAGTGCATCAGACGGCCTCAACACAGCCTCCTACTTAAAGCAGCCAAAATCATGGAGCAAGGGGTGCTCAAAAATAAACACAACAGTAATACCTAAACTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.78

Weight (kDa)

10.03

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 155
Acc36I ACCTGC 1 cut(s) 155
AccB1I GGYRCC 1 cut(s) 268
AclWI GGATC 4 cut(s) 94, 98, 107, 248
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 1 cut(s) 17
AjnI CCWGG 2 cut(s) 28, 306
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 2 cut(s) 40, 154
AluI AGCT 2 cut(s) 40, 154
Alw21I GWGCWC 1 cut(s) 446
AlwI GGATC 4 cut(s) 94, 98, 107, 248
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 1 cut(s) 418
AspS9I GGNCC 2 cut(s) 259, 304
AsuC2I CCSGG 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 2 cut(s) 259, 304
BaeGI GKGCMC 1 cut(s) 271
BamHI GGATCC 1 cut(s) 99
BanI GGYRCC 1 cut(s) 268
BbsI GAAGAC 2 cut(s) 44, 240
Bbv12I GWGCWC 1 cut(s) 446
BbvI GCAGC 1 cut(s) 430
BccI CCATC 1 cut(s) 324
BceAI ACGGC 1 cut(s) 406
BciT130I CCWGG 2 cut(s) 30, 308
BcnI CCSGG 1 cut(s) 88
BfaI CTAG 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 155
BisI GCNGC 1 cut(s) 419
BlsI GCNGC 1 cut(s) 420
Bme1390I CCNGG 3 cut(s) 30, 88, 308
Bme18I GGWCC 2 cut(s) 259, 304
BmgT120I GGNCC 2 cut(s) 259, 304
BmiI GGNNCC 2 cut(s) 101, 270
BmrFI CCNGG 3 cut(s) 30, 88, 308
BmsI GCATC 5 cut(s) 36, 124, 151, 226, 392
BpiI GAAGAC 2 cut(s) 44, 240
BpuMI CCSGG 1 cut(s) 88
Bsa29I ATCGAT 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 28, 282
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 1 cut(s) 357
BseBI CCWGG 2 cut(s) 30, 308
BseCI ATCGAT 1 cut(s) 146
BseDI CCNNGG 2 cut(s) 28, 282
BseGI GGATG 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMI GCAATG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 229
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 1 cut(s) 430
BshFI GGCC 1 cut(s) 393
BshNI GGYRCC 1 cut(s) 268
BshVI ATCGAT 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 446
BsiSI CCGG 2 cut(s) 87, 257
BslI CCNNNNNNNGG 1 cut(s) 283
BsnI GGCC 1 cut(s) 393
Bsp1286I GDGCHC 2 cut(s) 271, 446
Bsp143I GATC 3 cut(s) 90, 99, 253
BspANI GGCC 1 cut(s) 393
BspDI ATCGAT 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 101, 270
BspMI ACCTGC 1 cut(s) 155
BspPI GGATC 4 cut(s) 94, 98, 107, 248
BspT107I GGYRCC 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 357
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 28, 282
BssMI GATC 3 cut(s) 90, 99, 253
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 30, 308
Bst4CI ACNGT 1 cut(s) 463
BstAPI GCANNNNNTGC 1 cut(s) 441
BstF5I GGATG 1 cut(s) 335
BstKTI GATC 3 cut(s) 93, 102, 256
BstMBI GATC 3 cut(s) 90, 99, 253
BstMWI GCNNNNNNNGC 2 cut(s) 46, 441
BstNI CCWGG 2 cut(s) 30, 308
BstSCI CCNGG 3 cut(s) 28, 86, 306
BstSLI GKGCMC 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 430
BstV2I GAAGAC 2 cut(s) 44, 240
BstX2I RGATCY 2 cut(s) 90, 99
BstXI CCANNNNNNTGG 1 cut(s) 429
BstYI RGATCY 2 cut(s) 90, 99
Bsu15I ATCGAT 1 cut(s) 146
BsuRI GGCC 1 cut(s) 393
BsuTUI ATCGAT 1 cut(s) 146
BtsCI GGATG 1 cut(s) 335
BveI ACCTGC 1 cut(s) 155
Cfr13I GGNCC 2 cut(s) 259, 304
ClaI ATCGAT 1 cut(s) 146
CseI GACGC 1 cut(s) 38
CsiI ACCWGGT 1 cut(s) 306
CviAII CATG 2 cut(s) 201, 429
CviJI RGCY 9 cut(s) 40, 69, 154, 171, 190, 275, 393, 404, 421
CviKI_1 RGCY 9 cut(s) 40, 69, 154, 171, 190, 275, 393, 404, 421
DpnI GATC 3 cut(s) 92, 101, 255
DpnII GATC 3 cut(s) 90, 99, 253
Eco130I CCWWGG 1 cut(s) 282
Eco47I GGWCC 2 cut(s) 259, 304
EcoRII CCWGG 2 cut(s) 28, 306
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 2 cut(s) 204, 432
FaiI YATR 3 cut(s) 202, 314, 430
FatI CATG 2 cut(s) 200, 428
Fnu4HI GCNGC 1 cut(s) 419
FokI GGATG 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 419
FspBI CTAG 1 cut(s) 321
GluI GCNGC 1 cut(s) 419
HaeIII GGCC 1 cut(s) 393
HapII CCGG 2 cut(s) 87, 257
HgaI GACGC 1 cut(s) 38
Hin1II CATG 2 cut(s) 204, 432
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 4 cut(s) 10, 22, 143, 287
HpaII CCGG 2 cut(s) 87, 257
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 3 cut(s) 45, 253, 388
Hpy188III TCNNGA 5 cut(s) 7, 14, 97, 291, 321
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4V TGCA 4 cut(s) 164, 204, 217, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 441
Hsp92II CATG 2 cut(s) 204, 432
Kzo9I GATC 3 cut(s) 90, 99, 253
LmnI GCTCC 1 cut(s) 432
Lsp1109I GCAGC 1 cut(s) 430
LweI GCATC 5 cut(s) 36, 124, 151, 226, 392
MabI ACCWGGT 1 cut(s) 306
MaeI CTAG 1 cut(s) 321
MalI GATC 3 cut(s) 92, 101, 255
MboI GATC 3 cut(s) 90, 99, 253
MboII GAAGA 4 cut(s) 44, 85, 240, 346
MflI RGATCY 2 cut(s) 90, 99
MhlI GDGCHC 2 cut(s) 271, 446
MluCI AATT 2 cut(s) 60, 121
MnlI CCTC 5 cut(s) 92, 117, 349, 404, 415
MseI TTAA 3 cut(s) 59, 150, 413
MspI CCGG 2 cut(s) 87, 257
MspR9I CCNGG 3 cut(s) 30, 88, 308
MvaI CCWGG 2 cut(s) 30, 308
MwoI GCNNNNNNNGC 2 cut(s) 46, 441
NciI CCSGG 1 cut(s) 88
NdeII GATC 3 cut(s) 90, 99, 253
NlaIII CATG 2 cut(s) 204, 432
NlaIV GGNNCC 2 cut(s) 101, 270
NmeAIII GCCGAG 1 cut(s) 45
PaqCI CACCTGC 1 cut(s) 155
PfeI GAWTC 4 cut(s) 10, 22, 143, 287
PflFI GACNNNGTC 1 cut(s) 308
PfoI TCCNGGA 1 cut(s) 86
PkrI GCNGC 1 cut(s) 420
Psp6I CCWGG 2 cut(s) 28, 306
PspGI CCWGG 2 cut(s) 28, 306
PspN4I GGNNCC 2 cut(s) 101, 270
PspPI GGNCC 2 cut(s) 259, 304
PsuI RGATCY 2 cut(s) 90, 99
PsyI GACNNNGTC 1 cut(s) 308
SaqAI TTAA 3 cut(s) 59, 150, 413
SatI GCNGC 1 cut(s) 419
Sau3AI GATC 3 cut(s) 90, 99, 253
Sau96I GGNCC 2 cut(s) 259, 304
ScrFI CCNGG 3 cut(s) 30, 88, 308
SduI GDGCHC 2 cut(s) 271, 446
SetI ASST 7 cut(s) 42, 156, 169, 188, 298, 312, 472
SexAI ACCWGGT 1 cut(s) 306
SfaNI GCATC 5 cut(s) 36, 124, 151, 226, 392
SinI GGWCC 2 cut(s) 259, 304
Sse9I AATT 2 cut(s) 60, 121
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 3 cut(s) 28, 86, 306
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 463
TaqI TCGA 2 cut(s) 132, 146
TasI AATT 2 cut(s) 60, 121
TfiI GAWTC 4 cut(s) 10, 22, 143, 287
Tru1I TTAA 3 cut(s) 59, 150, 413
Tru9I TTAA 3 cut(s) 59, 150, 413
TseI GCWGC 1 cut(s) 418
TspDTI ATGAA 1 cut(s) 356
TspGWI ACGGA 1 cut(s) 106
Tth111I GACNNNGTC 1 cut(s) 308
VpaK11BI GGWCC 2 cut(s) 259, 304
XbaI TCTAGA 1 cut(s) 320
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.