Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002397

Physical Location & Seq

Genomic Coordinates Forward (+)

12848140 .. 12849866

Gene Structure 1727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g14550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAAGACACCAACTTTGAGTCTAGACATCTTAGCAAAGGTCCAAAGGGCACCAGCCCCACCCAAGGAATCAAGACCTATTAAAGACCAGGCCATAAAGTCTAAAACGGGATGGAAGAAAATGAAGTTGGCAATGGAGGGTAGTTCTGCTGGAAATGGTAGTGCATCAGCTTCAACACAGCCTCCTACTCAAAGCAGCCAAAATCATACAGCAAGGGATAAACACAGCAGCAGTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

80

Amino Acids

8.34

Weight (kDa)

10.35

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002397)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16320 FvH4_2g18400 FvH4_3g43980 FvH4_4g33840 FvH4_5g24170 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_6g31070 FvH4_6g34392 FvH4_6g39960 FvH4_6g54252 FvH4_7g14550
rosa_multiflora	Rmu_sc0000493.1_g000079
rosa_roxburghii	Rroxscaffold_156G00440260 Rroxscaffold_1G00012010 Rroxscaffold_3G00245190 Rroxscaffold_5G00364260 Rroxscaffold_6G00394000
rosa_rugosa	Rorug02G0526600 Rorug04G0297300 Rorug05G0393500 Rorug06G0196700
rosa_samantha	Rh1BG304600 Rh2CG414500 Rh2CG442900 Rh3AG287600 Rh3DG234900 Rh3DG253000 Rh3DG371300 Rh4BG116300 Rh4BG181700 Rh4BG256900 Rh4BG360600 Rh5CG403100 Rh5CG480500 Rh6DG117000 Rh6DG266300 Rh6DG307200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	174
AjnI	CCWGG	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	2 cut(s)	195, 228
ArsI	GACNNNNNNTTYG	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	1 cut(s)	105
BciT130I	CCWGG	1 cut(s)	89
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	2 cut(s)	196, 229
BlsI	GCNGC	2 cut(s)	197, 230
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	1 cut(s)	138
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	207
BshFI	GGCC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	64
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	52
BspANI	GGCC	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstSLI	GKGCMC	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	116
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	40
CviJI	RGCY	5 cut(s)	56, 92, 170, 181, 198
CviKI_1	RGCY	5 cut(s)	56, 92, 170, 181, 198
DdeI	CTNAG	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaiI	YATR	2 cut(s)	95, 207
Fnu4HI	GCNGC	2 cut(s)	196, 229
FokI	GGATG	1 cut(s)	123
Fsp4HI	GCNGC	2 cut(s)	196, 229
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	2 cut(s)	196, 229
HaeIII	GGCC	1 cut(s)	92
HinfI	GANTC	2 cut(s)	19, 68
Hpy188III	TCNNGA	2 cut(s)	23, 72
HpyCH4V	TGCA	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	31
LpnPI	CCDG	4 cut(s)	66, 74, 101, 135
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	1 cut(s)	23
MboII	GAAGA	2 cut(s)	16, 127
MhlI	GDGCHC	1 cut(s)	52
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	2 cut(s)	130, 192
MseI	TTAA	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	197, 230
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	2 cut(s)	196, 229
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	3 cut(s)	42, 79, 172
SfaNI	GCATC	1 cut(s)	173
SgeI	CNNG	9 cut(s)	35, 65, 76, 84, 100, 101, 120, 162, 225
SinI	GGWCC	1 cut(s)	40
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	2 cut(s)	195, 228
TspDTI	ATGAA	2 cut(s)	17, 137
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	40
XbaI	TCTAGA	1 cut(s)	22
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.