Rh3DG253000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002397
Physical Location & Seq
Reverse (-)
24984656 .. 24987279
2624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG253000.1

Sequence Viewer

Length: 393 bp
ATGGGCTATAGGGGTGAATGCAGTGATGATGGAGGTGAAACAGAAGAGGAGCTTGATAGCTTGAAAGGATCTGAAACTGAAGAAGATGAGGAAGGGAATCCACTCCCTGGTGAAGGGAGTTCCAATGGAGGCCAGGAAACTAGGAAGAGGCAAAGAAGGCAAGAGGCGCCAAAAGTTCCAACCTCAAAGGGTAATAACGGATTGAGGGATCAGATAATCAAGTCTAGGAGGAGTTGGAAGAAGTTAAAGACCATGGAGGGCAACCAAGGTGCAAATGGAGGGGCTTCTAGTTCACAAGCAATGCATGAACCTCCAACTCAGAGTAGCCAAAACCCTGCAGCAAAAAAGGCACAACAGAAGGGCCAAACTGAATCTGAATGGGCAACATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.11

Weight (kDa)

5.34

Isoelectric Point (pI)

69.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 166
AccB7I CCANNNNNTGG 1 cut(s) 107
AclWI GGATC 2 cut(s) 76, 216
AcuI CTGAAG 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 167
AfiI CCNNNNNNNGG 2 cut(s) 107, 113
AgsI TTSAA 1 cut(s) 64
AjnI CCWGG 2 cut(s) 106, 132
AluBI AGCT 2 cut(s) 52, 60
AluI AGCT 2 cut(s) 52, 60
AlwI GGATC 2 cut(s) 76, 216
AoxI GGCC 2 cut(s) 130, 361
ApeKI GCWGC 1 cut(s) 338
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 3 cut(s) 26, 47, 122
BanI GGYRCC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 350
BccI CCATC 1 cut(s) 23
BciT130I CCWGG 2 cut(s) 108, 134
BfaI CTAG 3 cut(s) 141, 225, 288
BfmI CTRYAG 2 cut(s) 7, 336
BfoI RGCGCY 1 cut(s) 170
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 2 cut(s) 108, 134
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 2 cut(s) 108, 134
BsaHI GRCGYC 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 106, 252, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 113
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 2 cut(s) 108, 134
BseDI CCNNGG 3 cut(s) 106, 252, 265
BseLI CCNNNNNNNGG 2 cut(s) 107, 113
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 332
BseRI GAGGAG 2 cut(s) 62, 244
BseXI GCAGC 1 cut(s) 350
BshFI GGCC 2 cut(s) 132, 363
BshNI GGYRCC 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 107, 113
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 2 cut(s) 132, 363
Bsp143I GATC 2 cut(s) 68, 208
Bsp19I CCATGG 1 cut(s) 252
BspANI GGCC 2 cut(s) 132, 363
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 168
BspMAI CTGCAG 1 cut(s) 340
BspPI GGATC 2 cut(s) 76, 216
BspT107I GGYRCC 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 306
BssECI CCNNGG 3 cut(s) 106, 252, 265
BssMI GATC 2 cut(s) 68, 208
BssNI GRCGYC 1 cut(s) 167
BssT1I CCWWGG 2 cut(s) 252, 265
Bst2UI CCWGG 2 cut(s) 108, 134
Bst6I CTCTTC 2 cut(s) 39, 140
BstACI GRCGYC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 318
BstDSI CCRYGG 1 cut(s) 252
BstENI CCTNNNNNAGG 1 cut(s) 111
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 2 cut(s) 71, 211
BstMBI GATC 2 cut(s) 68, 208
BstMWI GCNNNNNNNGC 3 cut(s) 157, 166, 347
BstNI CCWGG 2 cut(s) 108, 134
BstSCI CCNGG 2 cut(s) 106, 132
BstSFI CTRYAG 2 cut(s) 7, 336
BstV1I GCAGC 1 cut(s) 350
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuRI GGCC 2 cut(s) 132, 363
BtgI CCRYGG 1 cut(s) 252
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 28
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 361
CviAII CATG 2 cut(s) 253, 305
CviJI RGCY 7 cut(s) 6, 52, 60, 132, 284, 327, 363
CviKI_1 RGCY 7 cut(s) 6, 52, 60, 132, 284, 327, 363
DdeI CTNAG 1 cut(s) 318
DinI GGCGCC 1 cut(s) 168
DpnI GATC 2 cut(s) 70, 210
DpnII GATC 2 cut(s) 68, 208
Eam1104I CTCTTC 2 cut(s) 39, 140
EarI CTCTTC 2 cut(s) 39, 140
Eco130I CCWWGG 2 cut(s) 252, 265
Eco57I CTGAAG 1 cut(s) 99
EcoNI CCTNNNNNAGG 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 106, 132
EcoT14I CCWWGG 2 cut(s) 252, 265
EcoT22I ATGCAT 1 cut(s) 306
EgeI GGCGCC 1 cut(s) 168
EheI GGCGCC 1 cut(s) 168
ErhI CCWWGG 2 cut(s) 252, 265
FaeI CATG 2 cut(s) 256, 308
FaiI YATR 3 cut(s) 9, 254, 306
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FatI CATG 2 cut(s) 252, 304
Fnu4HI GCNGC 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 3 cut(s) 141, 225, 288
GlaI GCGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 339
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 2 cut(s) 132, 363
HhaI GCGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 2 cut(s) 256, 308
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HinfI GANTC 2 cut(s) 97, 371
HphI GGTGA 3 cut(s) 26, 47, 122
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 4 cut(s) 73, 213, 321, 376
Hpy8I GTNNAC 1 cut(s) 293
HpyAV CCTTC 4 cut(s) 86, 107, 150, 352
HpyCH4V TGCA 4 cut(s) 21, 272, 304, 338
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 166, 347
HpyF3I CTNAG 1 cut(s) 318
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 2 cut(s) 256, 308
HspAI GCGC 1 cut(s) 167
KasI GGCGCC 1 cut(s) 166
Kzo9I GATC 2 cut(s) 68, 208
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 5 cut(s) 93, 119, 120, 146, 348
Lsp1109I GCAGC 1 cut(s) 350
MaeI CTAG 3 cut(s) 141, 225, 288
MalI GATC 2 cut(s) 70, 210
MboI GATC 2 cut(s) 68, 208
MboII GAAGA 5 cut(s) 56, 92, 95, 157, 250
MflI RGATCY 1 cut(s) 68
Mly113I GGCGCC 1 cut(s) 167
MmeI TCCRAC 3 cut(s) 203, 215, 338
Mph1103I ATGCAT 1 cut(s) 306
MseI TTAA 1 cut(s) 245
MspR9I CCNGG 2 cut(s) 108, 134
Mva1269I GAATGC 1 cut(s) 23
MvaI CCWGG 2 cut(s) 108, 134
MwoI GCNNNNNNNGC 3 cut(s) 157, 166, 347
NarI GGCGCC 1 cut(s) 167
NcoI CCATGG 1 cut(s) 252
NdeII GATC 2 cut(s) 68, 208
NlaIII CATG 2 cut(s) 256, 308
NlaIV GGNNCC 1 cut(s) 168
NsiI ATGCAT 1 cut(s) 306
PctI GAATGC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 97, 371
PflMI CCANNNNNTGG 1 cut(s) 107
PkrI GCNGC 1 cut(s) 340
PluTI GGCGCC 1 cut(s) 170
Psp6I CCWGG 2 cut(s) 106, 132
PspGI CCWGG 2 cut(s) 106, 132
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 1 cut(s) 361
PstI CTGCAG 1 cut(s) 340
PsuI RGATCY 1 cut(s) 68
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 2 cut(s) 68, 208
Sau96I GGNCC 1 cut(s) 361
ScrFI CCNGG 2 cut(s) 108, 134
SetI ASST 6 cut(s) 37, 54, 62, 185, 271, 313
SfcI CTRYAG 2 cut(s) 7, 336
SfoI GGCGCC 1 cut(s) 168
SspDI GGCGCC 1 cut(s) 166
SspMI CTAG 3 cut(s) 141, 225, 288
StyD4I CCNGG 2 cut(s) 106, 132
StyI CCWWGG 2 cut(s) 252, 265
TfiI GAWTC 2 cut(s) 97, 371
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 1 cut(s) 28
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 1 cut(s) 321
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 28
Van91I CCANNNNNTGG 1 cut(s) 107
XagI CCTNNNNNAGG 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XspI CTAG 3 cut(s) 141, 225, 288
Zsp2I ATGCAT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.