Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002397

Physical Location & Seq

Genomic Coordinates Reverse (-)

53884287 .. 53884742

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0393500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGTGAGAGGAGGGATGAGGTACAACGTTGGACCACAGAACTAACTCCCAAAATGGAGGAAAGGTTGAAGGTGCAGATGGAGAAATCTCATCGTTTCAGTGTCCATTATTCTAGCCCTAGTGTTTACGAGGTTCGATCTGACTTTTCTTATGTAGTTAACATCTCCGACCATTCATGTTCATGTGTGAAATGGCAGATCAATTGTTTTCCTTGTCCTCACGGCCTTGCTACAATACAAGCTGCCTCTGAAAATGTCTATGATTATATTGATAAGTACTTTCGTGTTGATATGTTCAAGAAGAGCTACAGTTTTCCTATTCGGCCGATAACCAATGTTGATATGTCTTCTTCTGAATCTGCTACTGACTGTATATTACCTCCCCTTACGAAGAGGCCACCGGGGAGGCCTAGGGTGAAGCAGTTCAAGTCGGTTGGAAGGTTGAAAAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

17.61

Weight (kDa)

9.26

Isoelectric Point (pI)

59.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002397)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16320 FvH4_2g18400 FvH4_3g43980 FvH4_4g33840 FvH4_5g24170 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_6g31070 FvH4_6g34392 FvH4_6g39960 FvH4_6g54252 FvH4_7g14550
rosa_multiflora	Rmu_sc0000493.1_g000079
rosa_roxburghii	Rroxscaffold_156G00440260 Rroxscaffold_1G00012010 Rroxscaffold_3G00245190 Rroxscaffold_5G00364260 Rroxscaffold_6G00394000
rosa_rugosa	Rorug02G0526600 Rorug04G0297300 Rorug05G0393500 Rorug06G0196700
rosa_samantha	Rh1BG304600 Rh2CG414500 Rh2CG442900 Rh3AG287600 Rh3DG234900 Rh3DG253000 Rh3DG371300 Rh4BG116300 Rh4BG181700 Rh4BG256900 Rh4BG360600 Rh5CG403100 Rh5CG480500 Rh6DG117000 Rh6DG266300 Rh6DG307200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	323
AfaI	GTAC	2 cut(s)	24, 278
AgsI	TTSAA	4 cut(s)	70, 298, 427, 445
AluBI	AGCT	3 cut(s)	242, 306, 453
AluI	AGCT	3 cut(s)	242, 306, 453
AoxI	GGCC	4 cut(s)	223, 323, 395, 407
ApeKI	GCWGC	1 cut(s)	242
Asp700I	GAANNNNTTC	1 cut(s)	422
AspA2I	CCTAGG	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	402
AsuHPI	GGTGA	2 cut(s)	17, 427
AvaII	GGWCC	1 cut(s)	33
AvrII	CCTAGG	1 cut(s)	410
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	1 cut(s)	73
BceAI	ACGGC	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	402
BfaI	CTAG	3 cut(s)	114, 120, 411
BfmI	CTRYAG	1 cut(s)	307
BisI	GCNGC	1 cut(s)	243
BlnI	CCTAGG	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	244
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	1 cut(s)	402
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	402
BsaJI	CCNNGG	2 cut(s)	401, 410
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
BseDI	CCNNGG	2 cut(s)	401, 410
BseGI	GGATG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	25
BseX3I	CGGCCG	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	95
Bsh1285I	CGRYCG	1 cut(s)	326
BshFI	GGCC	4 cut(s)	225, 325, 397, 409
BsiEI	CGRYCG	1 cut(s)	326
BsiSI	CCGG	1 cut(s)	401
BsnI	GGCC	4 cut(s)	225, 325, 397, 409
Bsp143I	GATC	2 cut(s)	137, 198
BspANI	GGCC	4 cut(s)	225, 325, 397, 409
BspQI	GCTCTTC	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	401, 410
BssMI	GATC	2 cut(s)	137, 198
BssT1I	CCWWGG	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	311, 371
Bst6I	CTCTTC	2 cut(s)	296, 386
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	2 cut(s)	140, 201
BstMBI	GATC	2 cut(s)	137, 198
BstMCI	CGRYCG	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	229
BstV2I	GAAGAC	1 cut(s)	339
BstZI	CGGCCG	1 cut(s)	323
BsuRI	GGCC	4 cut(s)	225, 325, 397, 409
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	23, 277
CviAII	CATG	2 cut(s)	177, 183
CviJI	RGCY	8 cut(s)	117, 225, 242, 306, 325, 397, 409, 453
CviKI_1	RGCY	8 cut(s)	117, 225, 242, 306, 325, 397, 409, 453
CviQI	GTAC	2 cut(s)	23, 277
DpnI	GATC	2 cut(s)	139, 200
DpnII	GATC	2 cut(s)	137, 198
EaeI	YGGCCR	1 cut(s)	323
EagI	CGGCCG	1 cut(s)	323
Eam1104I	CTCTTC	2 cut(s)	296, 386
EarI	CTCTTC	2 cut(s)	296, 386
EclXI	CGGCCG	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	410
Eco147I	AGGCCT	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	33
Eco52I	CGGCCG	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	2 cut(s)	180, 186
FaiI	YATR	8 cut(s)	153, 178, 184, 261, 267, 293, 344, 374
FatI	CATG	2 cut(s)	176, 182
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	3 cut(s)	114, 120, 411
GluI	GCNGC	1 cut(s)	243
HaeIII	GGCC	4 cut(s)	225, 325, 397, 409
HapII	CCGG	1 cut(s)	401
Hin1II	CATG	2 cut(s)	180, 186
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	356
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	2 cut(s)	17, 427
Hpy166II	GTNNAC	2 cut(s)	127, 160
Hpy188I	TCNGA	4 cut(s)	142, 169, 250, 355
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	2 cut(s)	127, 160
HpyAV	CCTTC	2 cut(s)	64, 432
HpyCH4III	ACNGT	2 cut(s)	311, 371
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	1 cut(s)	76
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	2 cut(s)	180, 186
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	137, 198
LguI	GCTCTTC	1 cut(s)	296
LpnPI	CCDG	1 cut(s)	414
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	3 cut(s)	114, 120, 411
MaeII	ACGT	1 cut(s)	28
MalI	GATC	2 cut(s)	139, 200
MboI	GATC	2 cut(s)	137, 198
MboII	GAAGA	4 cut(s)	313, 339, 342, 403
MfeI	CAATTG	1 cut(s)	202
MluCI	AATT	1 cut(s)	202
MmeI	TCCRAC	3 cut(s)	11, 192, 415
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	181
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	402
MunI	CAATTG	1 cut(s)	202
NciI	CCSGG	1 cut(s)	402
NdeII	GATC	2 cut(s)	137, 198
NlaIII	CATG	2 cut(s)	180, 186
PceI	AGGCCT	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	244
Psp1406I	AACGTT	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	33
RsaI	GTAC	2 cut(s)	24, 278
RsaNI	GTAC	2 cut(s)	23, 277
RseI	CAYNNNNRTG	1 cut(s)	181
SapI	GCTCTTC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	137, 198
Sau96I	GGNCC	1 cut(s)	33
ScaI	AGTACT	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	402
SfcI	CTRYAG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	181
Sse9I	AATT	1 cut(s)	202
SseBI	AGGCCT	1 cut(s)	409
SspMI	CTAG	3 cut(s)	114, 120, 411
StuI	AGGCCT	1 cut(s)	409
StyD4I	CCNGG	1 cut(s)	400
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	311, 371
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	1 cut(s)	136
TasI	AATT	1 cut(s)	202
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	106
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	165, 171
TspRI	CASTG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	33
XmaJI	CCTAGG	1 cut(s)	410
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	3 cut(s)	114, 120, 411
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.