Rh2CG442900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002397
Physical Location & Seq
Forward (+)
59934921 .. 59935729
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG442900.1

Sequence Viewer

Length: 306 bp
ATGTTCTGCAAGATCTGTGGCCAGCAAGGACACAACAAATTGGGTTGTCCTATAACCAAGGCAAAAAAGGCAGCTGCAGCTGTTAAAAGAGCCCTTGCCCCTAAGAGGAGCACTAATGTGAAGGATCAAGTCATAAGATCCAGGAAAACATGGAAGAAATTGAAGACCACAGTGGAGAGTACTTCTGGTCCCAATGTTGGTGCATCAACTTCCCAATCTACTCACCAACCTCCTACTCAAAGTAGCCAGAATCCTACAGCAAGAGGTGCTACAAGGAAGAGTCAAAGGAATGCAGCAAGAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.81

Weight (kDa)

11.61

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 132, 132
AcoI YGGCCR 1 cut(s) 19
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 2 cut(s) 105, 197
AgsI TTSAA 1 cut(s) 163
AjnI CCWGG 1 cut(s) 140
AleI CACNNNNGTG 1 cut(s) 116
AluBI AGCT 2 cut(s) 74, 80
AluI AGCT 2 cut(s) 74, 80
Alw21I GWGCWC 1 cut(s) 113
AlwI GGATC 2 cut(s) 132, 132
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 4 cut(s) 71, 74, 77, 293
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 215
AvaII GGWCC 1 cut(s) 188
BalI TGGCCA 1 cut(s) 21
BanII GRGCYC 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 3 cut(s) 61, 83, 89
BciT130I CCWGG 1 cut(s) 142
BfmI CTRYAG 2 cut(s) 75, 255
BglII AGATCT 1 cut(s) 12
BisI GCNGC 4 cut(s) 72, 75, 78, 294
BlsI GCNGC 4 cut(s) 73, 76, 79, 295
BmcAI AGTACT 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 197
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 105, 197
BseRI GAGGAG 1 cut(s) 121
BseXI GCAGC 3 cut(s) 61, 83, 89
BshFI GGCC 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 113
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 105, 197
BsmFI GGGAC 1 cut(s) 174
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 1 cut(s) 21
Bsp1286I GDGCHC 2 cut(s) 94, 113
Bsp143I GATC 3 cut(s) 12, 124, 137
BspANI GGCC 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 190
BspMAI CTGCAG 1 cut(s) 79
BspPI GGATC 2 cut(s) 132, 132
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 3 cut(s) 12, 124, 137
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 272
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 102
BstKTI GATC 3 cut(s) 15, 127, 140
BstMBI GATC 3 cut(s) 12, 124, 137
BstMWI GCNNNNNNNGC 3 cut(s) 68, 77, 266
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BstSFI CTRYAG 2 cut(s) 75, 255
BstV1I GCAGC 3 cut(s) 61, 83, 89
BstV2I GAAGAC 1 cut(s) 170
BstX2I RGATCY 2 cut(s) 12, 137
BstYI RGATCY 2 cut(s) 12, 137
BsuRI GGCC 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 180
CspCI CAANNNNNGTGG 1 cut(s) 33
CviAII CATG 1 cut(s) 150
CviJI RGCY 5 cut(s) 21, 74, 80, 92, 246
CviKI_1 RGCY 5 cut(s) 21, 74, 80, 92, 246
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 1 cut(s) 102
DpnI GATC 3 cut(s) 14, 126, 139
DpnII GATC 3 cut(s) 12, 124, 137
EaeI YGGCCR 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 1 cut(s) 153
FaiI YATR 3 cut(s) 53, 134, 151
FaqI GGGAC 1 cut(s) 174
FatI CATG 1 cut(s) 149
Fnu4HI GCNGC 4 cut(s) 72, 75, 78, 294
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 4 cut(s) 72, 75, 78, 294
GluI GCNGC 4 cut(s) 72, 75, 78, 294
HaeIII GGCC 1 cut(s) 21
Hin1II CATG 1 cut(s) 153
HinfI GANTC 2 cut(s) 250, 280
HphI GGTGA 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 4 cut(s) 9, 77, 203, 293
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 77, 266
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 1 cut(s) 153
Kzo9I GATC 3 cut(s) 12, 124, 137
LmnI GCTCC 1 cut(s) 108
LpnPI CCDG 5 cut(s) 35, 127, 154, 171, 260
Lsp1109I GCAGC 3 cut(s) 61, 83, 89
LweI GCATC 1 cut(s) 212
MalI GATC 3 cut(s) 14, 126, 139
MboI GATC 3 cut(s) 12, 124, 137
MboII GAAGA 3 cut(s) 166, 175, 289
MflI RGATCY 2 cut(s) 12, 137
MhlI GDGCHC 2 cut(s) 94, 113
MlsI TGGCCA 1 cut(s) 21
MluCI AATT 2 cut(s) 38, 158
MluNI TGGCCA 1 cut(s) 21
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 4 cut(s) 99, 240, 257, 293
Mox20I TGGCCA 1 cut(s) 21
MscI TGGCCA 1 cut(s) 21
MseI TTAA 2 cut(s) 84, 304
MslI CAYNNNNRTG 1 cut(s) 116
Msp20I TGGCCA 1 cut(s) 21
MspA1I CMGCKG 2 cut(s) 74, 80
MspR9I CCNGG 1 cut(s) 142
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 1 cut(s) 142
MwoI GCNNNNNNNGC 3 cut(s) 68, 77, 266
NdeII GATC 3 cut(s) 12, 124, 137
NlaIII CATG 1 cut(s) 153
NlaIV GGNNCC 1 cut(s) 190
OliI CACNNNNGTG 1 cut(s) 116
PctI GAATGC 1 cut(s) 295
PfeI GAWTC 1 cut(s) 250
PfoI TCCNGGA 1 cut(s) 140
PkrI GCNGC 4 cut(s) 73, 76, 79, 295
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 188
PstI CTGCAG 1 cut(s) 79
PsuI RGATCY 2 cut(s) 12, 137
PvuII CAGCTG 2 cut(s) 74, 80
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 2 cut(s) 84, 304
SatI GCNGC 4 cut(s) 72, 75, 78, 294
Sau3AI GATC 3 cut(s) 12, 124, 137
Sau96I GGNCC 1 cut(s) 188
ScaI AGTACT 1 cut(s) 181
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 142
SduI GDGCHC 2 cut(s) 94, 113
SetI ASST 5 cut(s) 76, 82, 232, 268, 304
SfaNI GCATC 1 cut(s) 212
SfcI CTRYAG 2 cut(s) 75, 255
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 116
Sse9I AATT 2 cut(s) 38, 158
StyD4I CCNGG 1 cut(s) 140
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 172
TasI AATT 2 cut(s) 38, 158
TatI WGTACW 1 cut(s) 179
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 2 cut(s) 84, 304
Tru9I TTAA 2 cut(s) 84, 304
TscAI CASTG 1 cut(s) 177
TseI GCWGC 4 cut(s) 71, 74, 77, 293
TspRI CASTG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 188
ZrmI AGTACT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.