Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002397

Physical Location & Seq

Genomic Coordinates Reverse (-)

56636555 .. 56637351

Gene Structure 797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG414500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCCTAGAACCTACACCAAGATGACTTGCCAGGTGTGCTTCAAGAAAGGCCATAATAGGTTGGGCTGCCCAATCACTAAGGCCAAAAAAGTAGCAGCAGCTCAACAAGCAGGTGAAGGGAGTTCCAGTGGAGGCCAGCAAACTAGGAAGAGGCAAAGAAGGCAACAGGCACCAAAAGTTCCAACCTTAAAGGGTAATAGTAGATTGAGGGATCAGATCATCAAGTCTAGGAGGGGTTGGAAGAAGTTGAAGACCATGGAGGGCAACCAAGGTGCAAATGGAGGGGCTTCTAGTTCACAAGCAATGCATGAACCTCCAACTCAGAGTAGCCAAAACCCTGCAGCAAAAAAGGCACAACAGAAGGGCCAAACTGAATCTGAATGGGCAGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.31

Weight (kDa)

10.94

Isoelectric Point (pI)

57.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002397)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16320 FvH4_2g18400 FvH4_3g43980 FvH4_4g33840 FvH4_5g24170 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_6g31070 FvH4_6g34392 FvH4_6g39960 FvH4_6g54252 FvH4_7g14550
rosa_multiflora	Rmu_sc0000493.1_g000079
rosa_roxburghii	Rroxscaffold_156G00440260 Rroxscaffold_1G00012010 Rroxscaffold_3G00245190 Rroxscaffold_5G00364260 Rroxscaffold_6G00394000
rosa_rugosa	Rorug02G0526600 Rorug04G0297300 Rorug05G0393500 Rorug06G0196700
rosa_samantha	Rh1BG304600 Rh2CG414500 Rh2CG442900 Rh3AG287600 Rh3DG234900 Rh3DG253000 Rh3DG371300 Rh4BG116300 Rh4BG181700 Rh4BG256900 Rh4BG360600 Rh5CG403100 Rh5CG480500 Rh6DG117000 Rh6DG266300 Rh6DG307200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	101
Acc36I	ACCTGC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	169
AclWI	GGATC	1 cut(s)	219
AgsI	TTSAA	2 cut(s)	43, 250
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
AlwI	GGATC	1 cut(s)	219
AoxI	GGCC	4 cut(s)	49, 81, 133, 364
ApeKI	GCWGC	4 cut(s)	66, 95, 98, 341
AspS9I	GGNCC	1 cut(s)	364
AsuHPI	GGTGA	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	4 cut(s)	53, 107, 110, 353
BciT130I	CCWGG	1 cut(s)	32
BfaI	CTAG	4 cut(s)	6, 144, 228, 291
BfmI	CTRYAG	1 cut(s)	339
BfuAI	ACCTGC	1 cut(s)	101
BisI	GCNGC	4 cut(s)	67, 96, 99, 342
BlsI	GCNGC	4 cut(s)	68, 97, 100, 343
Bme1390I	CCNGG	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	255, 268
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bse1I	ACTGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	255, 268
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	126
BseXI	GCAGC	4 cut(s)	53, 107, 110, 353
BshFI	GGCC	4 cut(s)	51, 83, 135, 366
BshNI	GGYRCC	1 cut(s)	169
BsnI	GGCC	4 cut(s)	51, 83, 135, 366
Bsp143I	GATC	2 cut(s)	211, 216
Bsp19I	CCATGG	1 cut(s)	255
BspANI	GGCC	4 cut(s)	51, 83, 135, 366
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	343
BspMI	ACCTGC	1 cut(s)	101
BspPI	GGATC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	255, 268
BssMI	GATC	2 cut(s)	211, 216
BssT1I	CCWWGG	2 cut(s)	255, 268
Bst2UI	CCWGG	1 cut(s)	32
Bst6I	CTCTTC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	2 cut(s)	78, 321
BstDSI	CCRYGG	1 cut(s)	255
BstKTI	GATC	2 cut(s)	214, 219
BstMBI	GATC	2 cut(s)	211, 216
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 107, 160, 350
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	4 cut(s)	53, 107, 110, 353
BstV2I	GAAGAC	1 cut(s)	257
BsuRI	GGCC	4 cut(s)	51, 83, 135, 366
BtgI	CCRYGG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	364
CviAII	CATG	2 cut(s)	256, 308
CviJI	RGCY	8 cut(s)	51, 66, 83, 101, 135, 287, 330, 366
CviKI_1	RGCY	8 cut(s)	51, 66, 83, 101, 135, 287, 330, 366
DdeI	CTNAG	2 cut(s)	78, 321
DpnI	GATC	2 cut(s)	213, 218
DpnII	GATC	2 cut(s)	211, 216
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco130I	CCWWGG	2 cut(s)	255, 268
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	2 cut(s)	255, 268
EcoT22I	ATGCAT	1 cut(s)	309
ErhI	CCWWGG	2 cut(s)	255, 268
FaeI	CATG	2 cut(s)	259, 311
FaiI	YATR	3 cut(s)	54, 257, 309
FatI	CATG	2 cut(s)	255, 307
Fnu4HI	GCNGC	4 cut(s)	67, 96, 99, 342
Fsp4HI	GCNGC	4 cut(s)	67, 96, 99, 342
FspBI	CTAG	4 cut(s)	6, 144, 228, 291
GluI	GCNGC	4 cut(s)	67, 96, 99, 342
HaeIII	GGCC	4 cut(s)	51, 83, 135, 366
Hin1II	CATG	2 cut(s)	259, 311
HinfI	GANTC	1 cut(s)	374
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	3 cut(s)	216, 324, 379
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	296
HpyAV	CCTTC	3 cut(s)	110, 153, 355
HpyCH4V	TGCA	3 cut(s)	275, 307, 341
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 107, 160, 350
HpyF3I	CTNAG	2 cut(s)	78, 321
Hsp92II	CATG	2 cut(s)	259, 311
Kzo9I	GATC	2 cut(s)	211, 216
LpnPI	CCDG	8 cut(s)	17, 44, 96, 139, 149, 152, 351, 372
Lsp1109I	GCAGC	4 cut(s)	53, 107, 110, 353
MaeI	CTAG	4 cut(s)	6, 144, 228, 291
MalI	GATC	2 cut(s)	213, 218
MboI	GATC	2 cut(s)	211, 216
MboII	GAAGA	3 cut(s)	160, 253, 262
MmeI	TCCRAC	3 cut(s)	206, 218, 341
MnlI	CCTC	7 cut(s)	125, 144, 201, 225, 253, 275, 324
Mph1103I	ATGCAT	1 cut(s)	309
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	4 cut(s)	36, 107, 160, 350
NcoI	CCATGG	1 cut(s)	255
NdeII	GATC	2 cut(s)	211, 216
NlaIII	CATG	2 cut(s)	259, 311
NlaIV	GGNNCC	1 cut(s)	171
NsiI	ATGCAT	1 cut(s)	309
PaqCI	CACCTGC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	374
PkrI	GCNGC	4 cut(s)	68, 97, 100, 343
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	364
PstI	CTGCAG	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	4 cut(s)	67, 96, 99, 342
Sau3AI	GATC	2 cut(s)	211, 216
Sau96I	GGNCC	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	32
SetI	ASST	8 cut(s)	14, 36, 62, 103, 115, 188, 274, 316
SfcI	CTRYAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	20
SspMI	CTAG	4 cut(s)	6, 144, 228, 291
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	2 cut(s)	255, 268
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	4 cut(s)	66, 95, 98, 341
TspDTI	ATGAA	1 cut(s)	324
TspRI	CASTG	1 cut(s)	133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XspI	CTAG	4 cut(s)	6, 144, 228, 291
Zsp2I	ATGCAT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.