Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002397

Physical Location & Seq

Genomic Coordinates Reverse (-)

19571483 .. 19571758

Gene Structure 276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG116300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGAGATTTTTCATGGTGGTTATTTTGACAAGAAGTTGGATGGCACATGGAAGTATAAGGTTCCCAGGTTTAACAAGTTGGAGGGGAAGACATGGAAGAAAATCAAGCAAACTGTGGAGAGTACTTCGGGTCCTAATGTTGGTGCCTCAACATCACAATCAAATCAGCAACCTCCCACTCAAAGTAGCCAGAATCCGGCAGCTGGGAGTGCTCAATGGAAAGCATCAGAGCCTATGCAACCAAGCCAAGCTTCATCTGAATATGCAGCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

91

Amino Acids

10.03

Weight (kDa)

9.48

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002397)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16320 FvH4_2g18400 FvH4_3g43980 FvH4_4g33840 FvH4_5g24170 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_5g26770 FvH4_6g31070 FvH4_6g34392 FvH4_6g39960 FvH4_6g54252 FvH4_7g14550
rosa_multiflora	Rmu_sc0000493.1_g000079
rosa_roxburghii	Rroxscaffold_156G00440260 Rroxscaffold_1G00012010 Rroxscaffold_3G00245190 Rroxscaffold_5G00364260 Rroxscaffold_6G00394000
rosa_rugosa	Rorug02G0526600 Rorug04G0297300 Rorug05G0393500 Rorug06G0196700
rosa_samantha	Rh1BG304600 Rh2CG414500 Rh2CG442900 Rh3AG287600 Rh3DG234900 Rh3DG253000 Rh3DG371300 Rh4BG116300 Rh4BG181700 Rh4BG256900 Rh4BG360600 Rh5CG403100 Rh5CG480500 Rh6DG117000 Rh6DG266300 Rh6DG307200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	3 cut(s)	140, 196, 203
AjnI	CCWGG	1 cut(s)	65
AjuI	GAANNNNNNNTTGG	2 cut(s)	235, 267
AluBI	AGCT	2 cut(s)	203, 251
AluI	AGCT	2 cut(s)	203, 251
Alw21I	GWGCWC	1 cut(s)	214
ApeKI	GCWGC	2 cut(s)	200, 266
AspS9I	GGNCC	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	67
BisI	GCNGC	2 cut(s)	201, 267
BlsI	GCNGC	2 cut(s)	202, 268
BmcAI	AGTACT	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	3 cut(s)	63, 132, 145
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 196, 203
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	3 cut(s)	140, 196, 203
BseXI	GCAGC	1 cut(s)	212
BseYI	CCCAGC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	3 cut(s)	140, 196, 203
Bsp1286I	GDGCHC	1 cut(s)	214
BspLI	GGNNCC	3 cut(s)	63, 132, 145
BspT107I	GGYRCC	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	3 cut(s)	14, 48, 93
CviJI	RGCY	5 cut(s)	189, 203, 232, 246, 251
CviKI_1	RGCY	5 cut(s)	189, 203, 232, 246, 251
CviQI	GTAC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	65
FaeI	CATG	3 cut(s)	17, 51, 96
FaiI	YATR	6 cut(s)	15, 49, 57, 94, 236, 264
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FatI	CATG	3 cut(s)	13, 47, 92
Fnu4HI	GCNGC	2 cut(s)	201, 267
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	201, 267
GluI	GCNGC	2 cut(s)	201, 267
GsaI	CCCAGC	1 cut(s)	207
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	3 cut(s)	17, 51, 96
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	1 cut(s)	193
HpaII	CCGG	1 cut(s)	197
Hpy188I	TCNGA	2 cut(s)	229, 259
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	238, 266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
Hsp92II	CATG	3 cut(s)	17, 51, 96
LpnPI	CCDG	5 cut(s)	52, 79, 189, 203, 210
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	1 cut(s)	233
MboII	GAAGA	2 cut(s)	100, 109
MhlI	GDGCHC	1 cut(s)	214
MmeI	TCCRAC	2 cut(s)	18, 60
MnlI	CCTC	3 cut(s)	76, 157, 183
MseI	TTAA	2 cut(s)	72, 274
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	1 cut(s)	209
NlaIII	CATG	3 cut(s)	17, 51, 96
NlaIV	GGNNCC	3 cut(s)	63, 132, 145
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	202, 268
PpuMI	RGGWCCY	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	3 cut(s)	63, 132, 145
PspPI	GGNCC	1 cut(s)	131
PspPPI	RGGWCCY	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	72, 274
SatI	GCNGC	2 cut(s)	201, 267
Sau96I	GGNCC	1 cut(s)	131
ScaI	AGTACT	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	5 cut(s)	63, 71, 175, 205, 253
SfaNI	GCATC	1 cut(s)	233
SinI	GGWCC	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	115
TatI	WGTACW	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	2 cut(s)	72, 274
Tru9I	TTAA	2 cut(s)	72, 274
TseI	GCWGC	2 cut(s)	200, 266
TspDTI	ATGAA	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	131
ZrmI	AGTACT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.