FvH4_3g43980

glucan endo-1,3-beta-glucosidase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
36674171 .. 36674525
355 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43980.t1

Sequence Viewer

Length: 270 bp
ATGGGAGCTGGTGTGGAAGAGAAAGTAGATGGTGCAATGCCAGTGACTACATTGTCGCCACCAAAAGGGAACACAACATTCCTTGATGGCACAAAATGGTGTGTGGCTCTTGCTGGTGGGTCTTCTAATGGTTCCTTGTGCGCCAACAAAGGCAAAGATGGAGTCATTTTGCTGTGGGATTTGACCGAGGGAAAGAGGCTGTACTCGCTTGATGCTGGTGTCACTACAAGAAATATGGCAATCAGCGAGGAAATTATTTGCGACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

90

Amino Acids

9.26

Weight (kDa)

4.61

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 65
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
ArsI GACNNNNNNTTYG 2 cut(s) 147, 179
AspLEI GCGC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 114
BccI CCATC 3 cut(s) 23, 80, 152
BmiI GGNNCC 1 cut(s) 133
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 186
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 65
BseMI GCAATG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 12
BstHHI GCGC 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstV2I GAAGAC 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 48
CfoI GCGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 202
CviJI RGCY 3 cut(s) 8, 107, 199
CviKI_1 RGCY 3 cut(s) 8, 107, 199
CviQI GTAC 1 cut(s) 202
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
FaiI YATR 1 cut(s) 236
GlaI GCGC 1 cut(s) 142
HhaI GCGC 1 cut(s) 143
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HinfI GANTC 1 cut(s) 162
Hpy99I CGWCG 1 cut(s) 266
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HspAI GCGC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 3 cut(s) 54, 99, 201
LweI GCATC 1 cut(s) 202
MaeIII GTNAC 2 cut(s) 43, 220
MboII GAAGA 2 cut(s) 29, 114
MluCI AATT 1 cut(s) 252
MlyI GAGTC 1 cut(s) 171
MnlI CCTC 3 cut(s) 181, 189, 241
MwoI GCNNNNNNNGC 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 133
NmuCI GTSAC 2 cut(s) 43, 220
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 133
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SchI GAGTC 1 cut(s) 171
SetI ASST 1 cut(s) 10
SfaNI GCATC 1 cut(s) 202
Sse9I AATT 1 cut(s) 252
TaqII GACCGA 1 cut(s) 200
TasI AATT 1 cut(s) 252
TatI WGTACW 1 cut(s) 201
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 2 cut(s) 43, 220
Tsp45I GTSAC 2 cut(s) 43, 220
TspRI CASTG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.