Rh3DG371300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
47267401 .. 47268089
689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG371300.1

Sequence Viewer

Length: 411 bp
ATGGCACCTCCACCAGCCCCTAAGACAACCAAAATGCCAAGAACCTACTCCAAGATGACATGCCAAGTATGCTTCAAAAAATGTCATAATAGATTGGGCTGTCCAAGCACAAAGGCAAAGAAAGTAGCAACACAACAAGCAGGAGAAGGGAGTTCCAATGTAGCCAAGGAAAACAAGAAGAGGTCAAGGCAGCAGGCAGCAAAAGTTACAGCTTCAAAGGGGAGGCCTAGCTTGAATGACAATATCATCAAGTCTAGGAAGGGTTGGAAGAAGATGAAAACCATGGAGGGTAGCCAAGGTGCCAATGAAGGGCCTTCTAGTTCACAAACTAGGCATGATCCTCCAACACAAAGCAGCCAAAATCCAGCAGCAAAAAAGGCAAGGCAACAAGTCCAAACTGAATCTGAATGG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.01

Weight (kDa)

10.39

Isoelectric Point (pI)

71.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 299
AclWI GGATC 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 309
AgsI TTSAA 3 cut(s) 76, 216, 235
AluBI AGCT 2 cut(s) 212, 231
AluI AGCT 2 cut(s) 212, 231
AlwI GGATC 1 cut(s) 332
AoxI GGCC 2 cut(s) 224, 311
ApeKI GCWGC 4 cut(s) 190, 197, 354, 368
AspS9I GGNCC 1 cut(s) 311
BanI GGYRCC 2 cut(s) 4, 299
BbvI GCAGC 4 cut(s) 202, 209, 366, 380
BfaI CTAG 4 cut(s) 228, 255, 318, 330
BisI GCNGC 4 cut(s) 191, 198, 355, 369
BlsI GCNGC 4 cut(s) 192, 199, 356, 370
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 2 cut(s) 6, 301
BsaJI CCNNGG 3 cut(s) 165, 282, 295
Bsc4I CCNNNNNNNGG 1 cut(s) 309
BseDI CCNNGG 3 cut(s) 165, 282, 295
BseLI CCNNNNNNNGG 1 cut(s) 309
BseXI GCAGC 4 cut(s) 202, 209, 366, 380
BshFI GGCC 2 cut(s) 226, 313
BshNI GGYRCC 2 cut(s) 4, 299
BslI CCNNNNNNNGG 1 cut(s) 309
BsnI GGCC 2 cut(s) 226, 313
Bsp143I GATC 1 cut(s) 337
Bsp19I CCATGG 1 cut(s) 282
BspANI GGCC 2 cut(s) 226, 313
BspLI GGNNCC 2 cut(s) 6, 301
BspPI GGATC 1 cut(s) 332
BspT107I GGYRCC 2 cut(s) 4, 299
BssECI CCNNGG 3 cut(s) 165, 282, 295
BssMI GATC 1 cut(s) 337
BssT1I CCWWGG 3 cut(s) 165, 282, 295
Bst6I CTCTTC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 21
BstDSI CCRYGG 1 cut(s) 282
BstKTI GATC 1 cut(s) 340
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 3 cut(s) 69, 105, 377
BstNSI RCATGY 1 cut(s) 63
BstV1I GCAGC 4 cut(s) 202, 209, 366, 380
BsuRI GGCC 2 cut(s) 226, 313
BtgI CCRYGG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 311
CviAII CATG 3 cut(s) 60, 283, 335
CviJI RGCY 9 cut(s) 17, 99, 164, 212, 226, 231, 294, 313, 357
CviKI_1 RGCY 9 cut(s) 17, 99, 164, 212, 226, 231, 294, 313, 357
DdeI CTNAG 1 cut(s) 21
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco130I CCWWGG 3 cut(s) 165, 282, 295
Eco147I AGGCCT 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 311
EcoT14I CCWWGG 3 cut(s) 165, 282, 295
ErhI CCWWGG 3 cut(s) 165, 282, 295
FaeI CATG 3 cut(s) 63, 286, 338
FaiI YATR 5 cut(s) 61, 70, 87, 284, 336
FatI CATG 3 cut(s) 59, 282, 334
Fnu4HI GCNGC 4 cut(s) 191, 198, 355, 369
Fsp4HI GCNGC 4 cut(s) 191, 198, 355, 369
FspBI CTAG 4 cut(s) 228, 255, 318, 330
GluI GCNGC 4 cut(s) 191, 198, 355, 369
HaeIII GGCC 2 cut(s) 226, 313
Hin1II CATG 3 cut(s) 63, 286, 338
HinfI GANTC 1 cut(s) 401
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 406
Hpy8I GTNNAC 1 cut(s) 323
HpyAV CCTTC 4 cut(s) 140, 253, 302, 324
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 105, 377
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 3 cut(s) 63, 286, 338
Kzo9I GATC 1 cut(s) 337
LpnPI CCDG 4 cut(s) 27, 126, 179, 378
Lsp1109I GCAGC 4 cut(s) 202, 209, 366, 380
MaeI CTAG 4 cut(s) 228, 255, 318, 330
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 3 cut(s) 190, 280, 283
MmeI TCCRAC 2 cut(s) 245, 368
MnlI CCTC 5 cut(s) 18, 174, 216, 280, 351
MwoI GCNNNNNNNGC 3 cut(s) 69, 105, 377
NcoI CCATGG 1 cut(s) 282
NdeII GATC 1 cut(s) 337
NlaIII CATG 3 cut(s) 63, 286, 338
NlaIV GGNNCC 2 cut(s) 6, 301
NspI RCATGY 1 cut(s) 63
PceI AGGCCT 1 cut(s) 226
PfeI GAWTC 1 cut(s) 401
PkrI GCNGC 4 cut(s) 192, 199, 356, 370
PspN4I GGNNCC 2 cut(s) 6, 301
PspPI GGNCC 1 cut(s) 311
SatI GCNGC 4 cut(s) 191, 198, 355, 369
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 1 cut(s) 311
SetI ASST 6 cut(s) 10, 47, 185, 214, 233, 301
SseBI AGGCCT 1 cut(s) 226
SspMI CTAG 4 cut(s) 228, 255, 318, 330
StuI AGGCCT 1 cut(s) 226
StyI CCWWGG 3 cut(s) 165, 282, 295
TfiI GAWTC 1 cut(s) 401
TseI GCWGC 4 cut(s) 190, 197, 354, 368
TspDTI ATGAA 2 cut(s) 290, 321
XceI RCATGY 1 cut(s) 63
XspI CTAG 4 cut(s) 228, 255, 318, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.