FvH4_2g31830

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008302
Physical Location & Seq
Reverse (-)
24304737 .. 24305678
942 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31830.t1

Sequence Viewer

Length: 942 bp
ATGTTTGAGGACTCTGTTGTATCCGCCCTGCCCTCAATTTGGGCCTCCATGAACAGCTGGCTAACCCCAACTGTTCTCTTCGTCCTCCTCAACCTCATGATTGGCACCATCGCCATTGCCTCCAGCTTAGGCACCCAGAAGCACCACGACCAAGACCCACACAACCAACACGAACACCAACACCATCAAGGCTTGGTAAGATCTGCCTCTGTTTTGCAGCGCTTCAAATCCATCAACTTCTACTCCTACAGATCTCAAGAGCCCACCACGAACTCTGAAAAGGCCCCTGATTCCGACACCCATGAAGTCGAAGAGCTCAAACTCGTCAGATCTCCTTCCATCTTGCAGCGTCTCCAGTCCATCAAGTTCCAGTTCCACTTCCCCAGAGAGCCTATCCCTCAACAGCCCCGAGACTTCGTACTTCCGGAACCGGAAACCGAAGCGCATTACGCTTCTTACGACCACTCTCCTGAAGACGAATCTTCCGAACATGAAGAAGACGAATCTTCCGAACATGAAGAAGCCGAAGCCGAAGAGATGGAGCTGGATGAAGACCAGTTCGGAACCCAGGAAGACGAAGCGGAAGACCAGACGCTGGACGAGATTTACCGCCAGCTACAGCAAGAGCACCACGTCAGCAGGACAACCTCCGACACCATGCCGGCATCCGGCGAGGTGCCCGCGAAGCTGCCGAAGAAGATGAAGAAGTCGGCGAGCGCCAAGTCGGCATTTGGTCACTTCGCGGCGCAGGAAATCGTGGAGAGCCGCAGGCCGGCGACGGTGAGGGATAAGAAGGCGAAGAAGGCGGATCATGAGGACGATGAGGAGGTGGATGCGAAAGCCGATGACTTCATCAACAGGTTCAAGCAACAGCTCAAGCTGCAGAGGATCGACTCGATCATTAGGTACAAGGACATGATCAGCAGAGGCAGCGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

314

Amino Acids

35.95

Weight (kDa)

5.04

Isoelectric Point (pI)

59.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4408 PF14364 11 - 43 1.5e-14 Domain of unknown function (DUF4408)
DUF761 PF05553 274 - 309 4.6e-16 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 104, 131, 676
AccB7I CCANNNNNTGG 1 cut(s) 595
AccII CGCG 2 cut(s) 683, 743
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 7 cut(s) 24, 581, 610, 681, 743, 766, 806
AclWI GGATC 2 cut(s) 816, 896
AcuI CTGAAG 1 cut(s) 492
AfaI GTAC 2 cut(s) 420, 908
AfeI AGCGCT 1 cut(s) 221
AfiI CCNNNNNNNGG 4 cut(s) 39, 595, 668, 772
AgsI TTSAA 2 cut(s) 226, 865
AjiI CACGTC 1 cut(s) 634
AjnI CCWGG 1 cut(s) 567
AluBI AGCT 8 cut(s) 57, 126, 316, 544, 616, 688, 874, 880
AluI AGCT 8 cut(s) 57, 126, 316, 544, 616, 688, 874, 880
Alw21I GWGCWC 2 cut(s) 318, 630
Alw26I GTCTC 2 cut(s) 356, 405
AlwI GGATC 2 cut(s) 816, 896
AlwNI CAGNNNCTG 1 cut(s) 595
Ama87I CYCGRG 1 cut(s) 408
Aor13HI TCCGGA 1 cut(s) 424
Aor51HI AGCGCT 1 cut(s) 221
AoxI GGCC 3 cut(s) 42, 282, 770
ApeKI GCWGC 5 cut(s) 217, 346, 688, 880, 930
AspLEI GCGC 4 cut(s) 222, 445, 719, 748
AspS9I GGNCC 2 cut(s) 42, 283
AsuHPI GGTGA 1 cut(s) 793
AvaI CYCGRG 1 cut(s) 408
BaeGI GKGCMC 1 cut(s) 681
BanI GGYRCC 3 cut(s) 104, 131, 676
BanII GRGCYC 2 cut(s) 264, 318
BbsI GAAGAC 5 cut(s) 480, 504, 558, 579, 591
Bbv12I GWGCWC 2 cut(s) 318, 630
BbvI GCAGC 4 cut(s) 229, 358, 675, 867
BccI CCATC 6 cut(s) 116, 192, 239, 347, 368, 532
BciT130I CCWGG 1 cut(s) 569
BciVI GTATCC 1 cut(s) 31
BclI TGATCA 1 cut(s) 918
BcoDI GTCTC 2 cut(s) 356, 405
BfmI CTRYAG 3 cut(s) 247, 617, 881
BfoI RGCGCY 2 cut(s) 223, 720
BfuI GTATCC 1 cut(s) 31
BglI GCCNNNNNGGC 1 cut(s) 725
BglII AGATCT 3 cut(s) 200, 251, 329
BisI GCNGC 7 cut(s) 218, 347, 689, 744, 766, 881, 931
BlsI GCNGC 7 cut(s) 219, 348, 690, 745, 767, 882, 932
Bme1390I CCNGG 1 cut(s) 569
BmeT110I CYCGRG 1 cut(s) 408
BmgBI CACGTC 1 cut(s) 634
BmgT120I GGNCC 2 cut(s) 42, 283
BmiI GGNNCC 6 cut(s) 106, 133, 285, 429, 565, 678
BmrFI CCNGG 1 cut(s) 569
BmsI GCATC 2 cut(s) 674, 823
BpiI GAAGAC 5 cut(s) 480, 504, 558, 579, 591
BpmI CTGGAG 2 cut(s) 106, 338
Bpu10I CCTNAGC 1 cut(s) 127
BpuEI CTTGAG 2 cut(s) 240, 860
BsaJI CCNNGG 1 cut(s) 567
BsaWI WCCGGW 2 cut(s) 424, 430
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 4 cut(s) 39, 595, 668, 772
Bse118I RCCGGY 2 cut(s) 661, 772
Bse1I ACTGG 3 cut(s) 355, 370, 556
Bse3DI GCAATG 1 cut(s) 114
BseAI TCCGGA 1 cut(s) 424
BseBI CCWGG 1 cut(s) 569
BseDI CCNNGG 1 cut(s) 567
BseGI GGATG 3 cut(s) 553, 665, 838
BseLI CCNNNNNNNGG 4 cut(s) 39, 595, 668, 772
BseMI GCAATG 1 cut(s) 114
BseNI ACTGG 3 cut(s) 355, 370, 556
BseRI GAGGAG 2 cut(s) 77, 839
BseSI GKGCMC 1 cut(s) 681
BseXI GCAGC 4 cut(s) 229, 358, 675, 867
Bsh1236I CGCG 2 cut(s) 683, 743
BshFI GGCC 3 cut(s) 44, 284, 772
BshNI GGYRCC 3 cut(s) 104, 131, 676
BsiHKAI GWGCWC 2 cut(s) 318, 630
BsiHKCI CYCGRG 1 cut(s) 408
BsiSI CCGG 5 cut(s) 425, 431, 662, 669, 773
BslI CCNNNNNNNGG 4 cut(s) 39, 595, 668, 772
BsmAI GTCTC 2 cut(s) 356, 405
BsmBI CGTCTC 1 cut(s) 356
BsnI GGCC 3 cut(s) 44, 284, 772
BsoBI CYCGRG 1 cut(s) 408
Bsp1286I GDGCHC 4 cut(s) 264, 318, 630, 681
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 7 cut(s) 200, 251, 329, 808, 888, 897, 918
BspACI CCGC 7 cut(s) 24, 581, 610, 681, 743, 766, 806
BspANI GGCC 3 cut(s) 44, 284, 772
BspEI TCCGGA 1 cut(s) 424
BspFNI CGCG 2 cut(s) 683, 743
BspHI TCATGA 2 cut(s) 96, 811
BspLI GGNNCC 6 cut(s) 106, 133, 285, 429, 565, 678
BspMAI CTGCAG 1 cut(s) 885
BspPI GGATC 2 cut(s) 816, 896
BspQI GCTCTTC 1 cut(s) 306
BspT107I GGYRCC 3 cut(s) 104, 131, 676
BsrDI GCAATG 1 cut(s) 114
BsrFI RCCGGY 2 cut(s) 661, 772
BsrI ACTGG 3 cut(s) 355, 370, 556
BssAI RCCGGY 2 cut(s) 661, 772
BssECI CCNNGG 1 cut(s) 567
BssMI GATC 7 cut(s) 200, 251, 329, 808, 888, 897, 918
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 2 cut(s) 73, 781
Bst6I CTCTTC 3 cut(s) 83, 306, 528
BstC8I GCNNGC 7 cut(s) 59, 614, 663, 681, 715, 770, 774
BstDEI CTNAG 1 cut(s) 127
BstF5I GGATG 3 cut(s) 553, 665, 838
BstFNI CGCG 2 cut(s) 683, 743
BstH2I RGCGCY 2 cut(s) 223, 720
BstHHI GCGC 4 cut(s) 222, 445, 719, 748
BstKTI GATC 7 cut(s) 203, 254, 332, 811, 891, 900, 921
BstMAI GTCTC 2 cut(s) 356, 405
BstMBI GATC 7 cut(s) 200, 251, 329, 808, 888, 897, 918
BstMWI GCNNNNNNNGC 6 cut(s) 449, 685, 725, 803, 880, 930
BstNI CCWGG 1 cut(s) 569
BstSCI CCNGG 1 cut(s) 567
BstSFI CTRYAG 3 cut(s) 247, 617, 881
BstSLI GKGCMC 1 cut(s) 681
BstUI CGCG 2 cut(s) 683, 743
BstV1I GCAGC 4 cut(s) 229, 358, 675, 867
BstV2I GAAGAC 5 cut(s) 480, 504, 558, 579, 591
BstX2I RGATCY 3 cut(s) 200, 251, 329
BstYI RGATCY 3 cut(s) 200, 251, 329
BsuI GTATCC 1 cut(s) 31
BsuRI GGCC 3 cut(s) 44, 284, 772
BtgZI GCGATG 1 cut(s) 94
BtrI CACGTC 1 cut(s) 634
BtsCI GGATG 3 cut(s) 553, 665, 838
Cac8I GCNNGC 7 cut(s) 59, 614, 663, 681, 715, 770, 774
CaiI CAGNNNCTG 1 cut(s) 595
CciI TCATGA 2 cut(s) 96, 811
CfoI GCGC 4 cut(s) 222, 445, 719, 748
Cfr10I RCCGGY 2 cut(s) 661, 772
Cfr13I GGNCC 2 cut(s) 42, 283
CseI GACGC 2 cut(s) 338, 601
Csp6I GTAC 2 cut(s) 419, 907
CviAII CATG 8 cut(s) 49, 97, 302, 491, 515, 658, 812, 916
CviQI GTAC 2 cut(s) 419, 907
DdeI CTNAG 1 cut(s) 127
DpnI GATC 7 cut(s) 202, 253, 331, 810, 890, 899, 920
DpnII GATC 7 cut(s) 200, 251, 329, 808, 888, 897, 918
Eam1104I CTCTTC 3 cut(s) 83, 306, 528
EarI CTCTTC 3 cut(s) 83, 306, 528
EciI GGCGGA 2 cut(s) 13, 821
Ecl136II GAGCTC 1 cut(s) 316
Eco24I GRGCYC 2 cut(s) 264, 318
Eco47III AGCGCT 1 cut(s) 221
Eco53kI GAGCTC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 492
Eco88I CYCGRG 1 cut(s) 408
EcoICRI GAGCTC 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 567
EcoT38I GRGCYC 2 cut(s) 264, 318
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 8 cut(s) 52, 100, 305, 494, 518, 661, 815, 919
FaiI YATR 8 cut(s) 50, 98, 303, 492, 516, 659, 813, 917
FatI CATG 8 cut(s) 48, 96, 301, 490, 514, 657, 811, 915
FauI CCCGC 1 cut(s) 688
FbaI TGATCA 1 cut(s) 918
Fnu4HI GCNGC 7 cut(s) 218, 347, 689, 744, 766, 881, 931
FokI GGATG 3 cut(s) 560, 652, 845
FriOI GRGCYC 2 cut(s) 264, 318
Fsp4HI GCNGC 7 cut(s) 218, 347, 689, 744, 766, 881, 931
GlaI GCGC 4 cut(s) 221, 444, 718, 747
GluI GCNGC 7 cut(s) 218, 347, 689, 744, 766, 881, 931
GsuI CTGGAG 2 cut(s) 106, 338
HaeII RGCGCY 2 cut(s) 223, 720
HaeIII GGCC 3 cut(s) 44, 284, 772
HapII CCGG 5 cut(s) 425, 431, 662, 669, 773
HgaI GACGC 2 cut(s) 338, 601
HhaI GCGC 4 cut(s) 222, 445, 719, 748
Hin1II CATG 8 cut(s) 52, 100, 305, 494, 518, 661, 815, 919
Hin6I GCGC 4 cut(s) 220, 443, 717, 746
HinP1I GCGC 4 cut(s) 220, 443, 717, 746
HinfI GANTC 5 cut(s) 11, 290, 479, 503, 893
HpaII CCGG 5 cut(s) 425, 431, 662, 669, 773
HphI GGTGA 1 cut(s) 793
Hpy188I TCNGA 7 cut(s) 277, 295, 329, 487, 511, 563, 652
Hpy188III TCNNGA 5 cut(s) 97, 257, 425, 470, 812
Hpy99I CGWCG 1 cut(s) 781
HpyAV CCTTC 3 cut(s) 345, 787, 796
HpyCH4III ACNGT 2 cut(s) 73, 781
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 3 cut(s) 217, 346, 883
HpyF10VI GCNNNNNNNGC 6 cut(s) 449, 685, 725, 803, 880, 930
HpyF3I CTNAG 1 cut(s) 127
HpySE526I ACGT 1 cut(s) 633
Hsp92II CATG 8 cut(s) 52, 100, 305, 494, 518, 661, 815, 919
HspAI GCGC 4 cut(s) 220, 443, 717, 746
Kpn2I TCCGGA 1 cut(s) 424
KroI GCCGGC 2 cut(s) 661, 772
KroNI GCCGGC 2 cut(s) 663, 774
Ksp22I TGATCA 1 cut(s) 918
Kzo9I GATC 7 cut(s) 200, 251, 329, 808, 888, 897, 918
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 541
Lsp1109I GCAGC 4 cut(s) 229, 358, 675, 867
LweI GCATC 2 cut(s) 674, 823
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 1 cut(s) 734
MalI GATC 7 cut(s) 202, 253, 331, 810, 890, 899, 920
MboI GATC 7 cut(s) 200, 251, 329, 808, 888, 897, 918
MflI RGATCY 3 cut(s) 200, 251, 329
MhlI GDGCHC 4 cut(s) 264, 318, 630, 681
MluCI AATT 1 cut(s) 36
MlyI GAGTC 2 cut(s) 5, 887
MmeI TCCRAC 2 cut(s) 318, 675
MroI TCCGGA 1 cut(s) 424
MroNI GCCGGC 2 cut(s) 661, 772
MspA1I CMGCKG 1 cut(s) 57
MspI CCGG 5 cut(s) 425, 431, 662, 669, 773
MspR9I CCNGG 1 cut(s) 569
MvaI CCWGG 1 cut(s) 569
MvnI CGCG 2 cut(s) 683, 743
MwoI GCNNNNNNNGC 6 cut(s) 449, 685, 725, 803, 880, 930
NaeI GCCGGC 2 cut(s) 663, 774
NdeII GATC 7 cut(s) 200, 251, 329, 808, 888, 897, 918
NgoMIV GCCGGC 2 cut(s) 661, 772
NlaIII CATG 8 cut(s) 52, 100, 305, 494, 518, 661, 815, 919
NlaIV GGNNCC 6 cut(s) 106, 133, 285, 429, 565, 678
NmuCI GTSAC 1 cut(s) 734
PagI TCATGA 2 cut(s) 96, 811
PciSI GCTCTTC 1 cut(s) 306
PcsI WCGNNNNNNNCGW 3 cut(s) 456, 483, 507
PdiI GCCGGC 2 cut(s) 663, 774
PfeI GAWTC 3 cut(s) 290, 479, 503
PflMI CCANNNNNTGG 1 cut(s) 595
PkrI GCNGC 7 cut(s) 219, 348, 690, 745, 767, 882, 932
PleI GAGTC 2 cut(s) 5, 887
PpsI GAGTC 2 cut(s) 5, 887
Psp124BI GAGCTC 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 567
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 6 cut(s) 106, 133, 285, 429, 565, 678
PspPI GGNCC 2 cut(s) 42, 283
PstI CTGCAG 1 cut(s) 885
PstNI CAGNNNCTG 1 cut(s) 595
PsuI RGATCY 3 cut(s) 200, 251, 329
PvuII CAGCTG 1 cut(s) 57
RsaI GTAC 2 cut(s) 420, 908
RsaNI GTAC 2 cut(s) 419, 907
SacI GAGCTC 1 cut(s) 318
SapI GCTCTTC 1 cut(s) 306
SatI GCNGC 7 cut(s) 218, 347, 689, 744, 766, 881, 931
Sau3AI GATC 7 cut(s) 200, 251, 329, 808, 888, 897, 918
Sau96I GGNCC 2 cut(s) 42, 283
SchI GAGTC 2 cut(s) 5, 887
ScrFI CCNGG 1 cut(s) 569
SduI GDGCHC 4 cut(s) 264, 318, 630, 681
SfaNI GCATC 2 cut(s) 674, 823
SfcI CTRYAG 3 cut(s) 247, 617, 881
SmlI CTYRAG 2 cut(s) 255, 875
SmoI CTYRAG 2 cut(s) 255, 875
Sse9I AATT 1 cut(s) 36
SsiI CCGC 7 cut(s) 24, 581, 610, 681, 743, 766, 806
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 567
TaaI ACNGT 2 cut(s) 73, 781
TaiI ACGT 1 cut(s) 636
TaqI TCGA 3 cut(s) 309, 891, 896
TasI AATT 1 cut(s) 36
TauI GCSGC 2 cut(s) 746, 768
TfiI GAWTC 3 cut(s) 290, 479, 503
TseFI GTSAC 1 cut(s) 734
TseI GCWGC 5 cut(s) 217, 346, 688, 880, 930
Tsp45I GTSAC 1 cut(s) 734
TspDTI ATGAA 7 cut(s) 65, 318, 507, 531, 564, 716, 841
Van91I CCANNNNNTGG 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.