Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008302

Physical Location & Seq

Genomic Coordinates Reverse (-)

35926201 .. 35927607

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G411600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTTTGAGGAATCTGTCTCAATTTGGGCTTCCATGAACAGCTGGTTCACTCCAACTGTTTTTTTTGTCCTCCTCAATGTCATGATAGGCACCATTGCCATTGCTTCAAACTTAGGCACCAACCAGAAACACCAAGACCCACAAAACCAGCAGCAAGGCCTTGCTAGATCTCCATCTGTGCTGCAGAGGATCAAATCCATCAACCTCTACCACTACAGATCCCCAGAGCCACACACAAACACCTTTGAGAAAAACCCAGAAACTACTGAGAGCACCCATTATGCTTTTAGGCACACCCAGGAAGCTGAGCAACCCCAATTCACTAGATCCCCTTCTTTGCTACAGAGGCTCAAGTCCATCAACTTCTACATTCCACAAGATTTCTCCACCAACCCATCACAACCCTCCACCAACCCGTCACAACCCATCACCACCACAACCACTCTGCACAAAACCCAGGAGCCAGAATCCCATTCTGAACATGACCAGTTCCAAGATGAAGACCATTTTGAAGACCATGAACACCCAGAAAGCCCAGAACCAGAATCAGAATCAGAAGAAGAGCAGAGCCTCGATGAGATTTACAGTCAGCTGAAGCCTCTACAGGACCATCATGTGAGCAGGACGAAGTCAGACACCAAACCAGCATCCGGAGAAGTACCCACTAAGCTCCCAAAGAAGATGAAGAAGTCTGCGAGTTCCAAGTCTGCATTTGGTCATTTTAAAGAAGATGATATTGTGGAGATTCGCCGGCCAGCGACTGTGAGGGAGAGGAAAGCTAAAGTGACAGAGGACGAGGAGGTGGATGCCAAGGCGGATGATTTCATCAACAAGTTCAAGAACCAGCTGAAGCTGCAAAGGTTGGATTCCATCATAAGGTACAAGGACATGCTCAATAGAGGGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408 DUF761

Protein Analysis

303

Amino Acids

34.79

Weight (kDa)

5.79

Isoelectric Point (pI)

62.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26110
fragaria_vesca	FvH4_2g31830
malus_domestica	MD08G1062500.v1.1 MD15G1059100.v1.1
prunus_persica	Prupe.1G411600_v2.0.a1
pyrus_communis	pycom08g05150 pycom08g05170 pycom15g05550
rosa_chinensis	RchiOBHm_Chr6g0310991
rosa_laevigata	RLG00000010444
rosa_multiflora	Rmu_co8298593.1_g000001 Rmu_co8387599.1_g000001 Rmu_sc0005220.1_g000004
rosa_roxburghii	Rroxscaffold_7G00158120
rosa_rugosa	Rorug06G0384700
rosa_samantha	Rh5BG107200 Rh6AG498500 Rh6BG508900 Rh6CG514800 Rh6DG501400
rosa_wichuraiana	Rw0G006860 Rw1G019270 Rw6G043400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	89, 116
AccIII	TCCGGA	1 cut(s)	650
AciI	CCGC	1 cut(s)	815
AclWI	GGATC	3 cut(s)	197, 213, 321
AcoI	YGGCCR	1 cut(s)	752
AcuI	CTGAAG	2 cut(s)	614, 869
AfaI	GTAC	2 cut(s)	660, 881
AfiI	CCNNNNNNNGG	2 cut(s)	650, 876
AgsI	TTSAA	3 cut(s)	108, 512, 838
AjnI	CCWGG	2 cut(s)	297, 456
AluBI	AGCT	7 cut(s)	42, 305, 592, 670, 779, 847, 853
AluI	AGCT	7 cut(s)	42, 305, 592, 670, 779, 847, 853
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	3 cut(s)	197, 213, 321
AlwNI	CAGNNNCTG	1 cut(s)	761
Aor13HI	TCCGGA	1 cut(s)	650
AoxI	GGCC	2 cut(s)	157, 752
ApeKI	GCWGC	3 cut(s)	151, 181, 853
AspS9I	GGNCC	1 cut(s)	607
AsuHPI	GGTGA	1 cut(s)	421
AvaII	GGWCC	1 cut(s)	607
BanI	GGYRCC	2 cut(s)	89, 116
BbsI	GAAGAC	2 cut(s)	507, 519
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	3 cut(s)	163, 168, 840
BccI	CCATC	7 cut(s)	181, 206, 365, 403, 434, 618, 878
BciT130I	CCWGG	2 cut(s)	299, 458
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	2 cut(s)	165, 324
BfmI	CTRYAG	4 cut(s)	182, 214, 341, 602
BglII	AGATCT	1 cut(s)	167
BisI	GCNGC	3 cut(s)	152, 182, 854
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	3 cut(s)	153, 183, 855
Bme1390I	CCNGG	2 cut(s)	299, 458
Bme18I	GGWCC	1 cut(s)	607
BmgT120I	GGNCC	1 cut(s)	607
BmiI	GGNNCC	3 cut(s)	91, 118, 462
BmrFI	CCNGG	2 cut(s)	299, 458
BmsI	GCATC	2 cut(s)	656, 796
BpiI	GAAGAC	2 cut(s)	507, 519
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	335
BsaBI	GATNNNNATC	1 cut(s)	172
BsaJI	CCNNGG	3 cut(s)	297, 456, 810
BsaWI	WCCGGW	1 cut(s)	650
Bsc4I	CCNNNNNNNGG	2 cut(s)	650, 876
Bse118I	RCCGGY	1 cut(s)	750
Bse1I	ACTGG	1 cut(s)	487
Bse3DI	GCAATG	2 cut(s)	93, 99
Bse8I	GATNNNNATC	1 cut(s)	172
BseAI	TCCGGA	1 cut(s)	650
BseBI	CCWGG	2 cut(s)	299, 458
BseDI	CCNNGG	3 cut(s)	297, 456, 810
BseGI	GGATG	3 cut(s)	647, 811, 823
BseJI	GATNNNNATC	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	650, 876
BseMI	GCAATG	2 cut(s)	93, 99
BseMII	CTCAG	2 cut(s)	258, 297
BseNI	ACTGG	1 cut(s)	487
BseRI	GAGGAG	2 cut(s)	62, 812
BseXI	GCAGC	3 cut(s)	163, 168, 840
BsgI	GTGCAG	1 cut(s)	431
BshFI	GGCC	2 cut(s)	159, 754
BshNI	GGYRCC	2 cut(s)	89, 116
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	651, 751
BslI	CCNNNNNNNGG	2 cut(s)	650, 876
BsmAI	GTCTC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	159, 754
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp13I	TCCGGA	1 cut(s)	650
Bsp143I	GATC	4 cut(s)	167, 189, 218, 326
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	1 cut(s)	815
BspANI	GGCC	2 cut(s)	159, 754
BspCNI	CTCAG	2 cut(s)	259, 298
BspEI	TCCGGA	1 cut(s)	650
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	3 cut(s)	91, 118, 462
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	3 cut(s)	197, 213, 321
BspQI	GCTCTTC	1 cut(s)	555
BspT107I	GGYRCC	2 cut(s)	89, 116
BsrDI	GCAATG	2 cut(s)	93, 99
BsrFI	RCCGGY	1 cut(s)	750
BsrI	ACTGG	1 cut(s)	487
BssAI	RCCGGY	1 cut(s)	750
BssECI	CCNNGG	3 cut(s)	297, 456, 810
BssMI	GATC	4 cut(s)	167, 189, 218, 326
BssT1I	CCWWGG	1 cut(s)	810
Bst2UI	CCWGG	2 cut(s)	299, 458
Bst4CI	ACNGT	3 cut(s)	58, 587, 763
Bst6I	CTCTTC	1 cut(s)	555
BstC8I	GCNNGC	2 cut(s)	752, 756
BstDEI	CTNAG	4 cut(s)	112, 267, 306, 666
BstF5I	GGATG	3 cut(s)	647, 811, 823
BstKTI	GATC	4 cut(s)	170, 192, 221, 329
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	4 cut(s)	167, 189, 218, 326
BstMWI	GCNNNNNNNGC	2 cut(s)	346, 853
BstNI	CCWGG	2 cut(s)	299, 458
BstNSI	RCATGY	1 cut(s)	892
BstSCI	CCNGG	2 cut(s)	297, 456
BstSFI	CTRYAG	4 cut(s)	182, 214, 341, 602
BstV1I	GCAGC	3 cut(s)	163, 168, 840
BstV2I	GAAGAC	2 cut(s)	507, 519
BstX2I	RGATCY	3 cut(s)	167, 218, 326
BstYI	RGATCY	3 cut(s)	167, 218, 326
BsuRI	GGCC	2 cut(s)	159, 754
BtsCI	GGATG	3 cut(s)	647, 811, 823
Cac8I	GCNNGC	2 cut(s)	752, 756
CaiI	CAGNNNCTG	1 cut(s)	761
CciI	TCATGA	1 cut(s)	81
Cfr10I	RCCGGY	1 cut(s)	750
Cfr13I	GGNCC	1 cut(s)	607
Csp6I	GTAC	2 cut(s)	659, 880
CviAII	CATG	6 cut(s)	34, 82, 482, 518, 614, 889
CviQI	GTAC	2 cut(s)	659, 880
DdeI	CTNAG	4 cut(s)	112, 267, 306, 666
DpnI	GATC	4 cut(s)	169, 191, 220, 328
DpnII	GATC	4 cut(s)	167, 189, 218, 326
DraI	TTTAAA	1 cut(s)	724
EaeI	YGGCCR	1 cut(s)	752
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
EciI	GGCGGA	1 cut(s)	830
Eco130I	CCWWGG	1 cut(s)	810
Eco147I	AGGCCT	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	607
Eco57I	CTGAAG	2 cut(s)	614, 869
EcoRII	CCWGG	2 cut(s)	297, 456
EcoT14I	CCWWGG	1 cut(s)	810
ErhI	CCWWGG	1 cut(s)	810
FaeI	CATG	6 cut(s)	37, 85, 485, 521, 617, 892
FaiI	YATR	9 cut(s)	35, 83, 282, 483, 519, 615, 875, 890, 907
FatI	CATG	6 cut(s)	33, 81, 481, 517, 613, 888
Fnu4HI	GCNGC	3 cut(s)	152, 182, 854
FokI	GGATG	3 cut(s)	634, 818, 830
Fsp4HI	GCNGC	3 cut(s)	152, 182, 854
FspBI	CTAG	2 cut(s)	165, 324
GluI	GCNGC	3 cut(s)	152, 182, 854
HaeIII	GGCC	2 cut(s)	159, 754
HapII	CCGG	2 cut(s)	651, 751
Hin1II	CATG	6 cut(s)	37, 85, 485, 521, 617, 892
HinfI	GANTC	6 cut(s)	11, 467, 545, 551, 745, 866
HpaII	CCGG	2 cut(s)	651, 751
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	4 cut(s)	478, 550, 556, 634
Hpy188III	TCNNGA	3 cut(s)	82, 651, 838
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	1 cut(s)	342
HpyCH4III	ACNGT	3 cut(s)	58, 587, 763
HpyCH4V	TGCA	4 cut(s)	184, 448, 710, 856
HpyF10VI	GCNNNNNNNGC	2 cut(s)	346, 853
HpyF3I	CTNAG	4 cut(s)	112, 267, 306, 666
Hsp92II	CATG	6 cut(s)	37, 85, 485, 521, 617, 892
Kpn2I	TCCGGA	1 cut(s)	650
KroI	GCCGGC	1 cut(s)	750
KroNI	GCCGGC	1 cut(s)	752
Kzo9I	GATC	4 cut(s)	167, 189, 218, 326
LguI	GCTCTTC	1 cut(s)	555
LmnI	GCTCC	2 cut(s)	460, 675
Lsp1109I	GCAGC	3 cut(s)	163, 168, 840
LweI	GCATC	2 cut(s)	656, 796
MaeI	CTAG	2 cut(s)	165, 324
MaeIII	GTNAC	2 cut(s)	417, 784
MalI	GATC	4 cut(s)	169, 191, 220, 328
MboI	GATC	4 cut(s)	167, 189, 218, 326
MboII	GAAGA	7 cut(s)	512, 524, 569, 572, 691, 697, 740
MflI	RGATCY	3 cut(s)	167, 218, 326
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	2 cut(s)	21, 317
MmeI	TCCRAC	2 cut(s)	77, 843
MroI	TCCGGA	1 cut(s)	650
MroNI	GCCGGC	1 cut(s)	750
MseI	TTAA	1 cut(s)	723
MspA1I	CMGCKG	3 cut(s)	42, 592, 847
MspI	CCGG	2 cut(s)	651, 751
MspR9I	CCNGG	2 cut(s)	299, 458
MvaI	CCWGG	2 cut(s)	299, 458
MwoI	GCNNNNNNNGC	2 cut(s)	346, 853
NaeI	GCCGGC	1 cut(s)	752
NdeII	GATC	4 cut(s)	167, 189, 218, 326
NgoMIV	GCCGGC	1 cut(s)	750
NlaIII	CATG	6 cut(s)	37, 85, 485, 521, 617, 892
NlaIV	GGNNCC	3 cut(s)	91, 118, 462
NmuCI	GTSAC	2 cut(s)	417, 784
NspI	RCATGY	1 cut(s)	892
PagI	TCATGA	1 cut(s)	81
PceI	AGGCCT	1 cut(s)	159
PciSI	GCTCTTC	1 cut(s)	555
PdiI	GCCGGC	1 cut(s)	752
PfeI	GAWTC	6 cut(s)	11, 467, 545, 551, 745, 866
PflFI	GACNNNGTC	1 cut(s)	628
PkrI	GCNGC	3 cut(s)	153, 183, 855
Psp6I	CCWGG	2 cut(s)	297, 456
PspGI	CCWGG	2 cut(s)	297, 456
PspN4I	GGNNCC	3 cut(s)	91, 118, 462
PspPI	GGNCC	1 cut(s)	607
PstI	CTGCAG	1 cut(s)	186
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	3 cut(s)	167, 218, 326
PsyI	GACNNNGTC	1 cut(s)	628
PvuII	CAGCTG	3 cut(s)	42, 592, 847
RsaI	GTAC	2 cut(s)	660, 881
RsaNI	GTAC	2 cut(s)	659, 880
SapI	GCTCTTC	1 cut(s)	555
SaqAI	TTAA	1 cut(s)	723
SatI	GCNGC	3 cut(s)	152, 182, 854
Sau3AI	GATC	4 cut(s)	167, 189, 218, 326
Sau96I	GGNCC	1 cut(s)	607
ScrFI	CCNGG	2 cut(s)	299, 458
SduI	GDGCHC	1 cut(s)	275
SfaNI	GCATC	2 cut(s)	656, 796
SfcI	CTRYAG	4 cut(s)	182, 214, 341, 602
SinI	GGWCC	1 cut(s)	607
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	2 cut(s)	21, 317
SseBI	AGGCCT	1 cut(s)	159
SsiI	CCGC	1 cut(s)	815
SspMI	CTAG	2 cut(s)	165, 324
StuI	AGGCCT	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	297, 456
StyI	CCWWGG	1 cut(s)	810
TaaI	ACNGT	3 cut(s)	58, 587, 763
TaqI	TCGA	1 cut(s)	573
TasI	AATT	2 cut(s)	21, 317
TfiI	GAWTC	6 cut(s)	11, 467, 545, 551, 745, 866
Tru1I	TTAA	1 cut(s)	723
Tru9I	TTAA	1 cut(s)	723
TseFI	GTSAC	2 cut(s)	417, 784
TseI	GCWGC	3 cut(s)	151, 181, 853
Tsp45I	GTSAC	2 cut(s)	417, 784
TspDTI	ATGAA	5 cut(s)	50, 513, 534, 698, 814
Tth111I	GACNNNGTC	1 cut(s)	628
VpaK11BI	GGWCC	1 cut(s)	607
XceI	RCATGY	1 cut(s)	892
XspI	CTAG	2 cut(s)	165, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.