Rmu_co8298593.1_g000001

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8298593.1
OG0008302
Physical Location & Seq
Forward (+)
201 .. 818
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8298593.1_g000001.1.cds

Sequence Viewer

Length: 618 bp
atgaacagctggttaaccccaactgtcctcttcctcctcctccagctcatgattggcatcatcttcattgcttctagcctcggcacccagaagccccacgaccaagacaaccaccaccaccacgaccaccaccaacaaggcttggcgagatctccctttgttttgcagcggttcaaatccatcaacttctacgcctacagatctccggaaccggccacgaattaccaaaaatcccctgaatccgagacccattttgctttcccgcacgcccaggaggtcgaacaacccaagctccccagaactccttccatgctggagcggctccagtccttcaagttccagttccacttccccaaagaatccagcccgctacagccccgagacttggcagtcccggacccggaaccggaaccccatttcagtacttacgagcactctcatgaagacgacgaagagtcggaagaggaggccggagagttggatgaggaccaattagaagccgaagaagaaggtaaagagaaagaccagacccagcgccaagtcggcatttgctcatttcgcggcggacgattatatcacaaagtgttcatatttaaaaaaaaaaacactattatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

205

Amino Acids

23.93

Weight (kDa)

5.57

Isoelectric Point (pI)

59.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 83
AccBSI CCGCTC 1 cut(s) 319
AccII CGCG 1 cut(s) 561
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 6 cut(s) 169, 263, 319, 368, 561, 564
AcoI YGGCCR 1 cut(s) 213
AdeI CACNNNGTG 1 cut(s) 583
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 3 cut(s) 385, 400, 406
AgsI TTSAA 2 cut(s) 175, 334
AhdI GACNNNNNGTC 1 cut(s) 454
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 3 cut(s) 9, 46, 292
AluI AGCT 3 cut(s) 9, 46, 292
Alw21I GWGCWC 1 cut(s) 435
Alw26I GTCTC 2 cut(s) 239, 375
Ama87I CYCGRG 1 cut(s) 378
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 2 cut(s) 213, 468
ApeKI GCWGC 1 cut(s) 166
Asp700I GAANNNNTTC 1 cut(s) 304
AspLEI GCGC 1 cut(s) 537
AspS9I GGNCC 2 cut(s) 397, 487
AsuC2I CCSGG 2 cut(s) 395, 401
AvaI CYCGRG 1 cut(s) 378
AvaII GGWCC 2 cut(s) 397, 487
BanI GGYRCC 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 1 cut(s) 178
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 272
BcnI CCSGG 2 cut(s) 395, 401
BcoDI GTCTC 2 cut(s) 239, 375
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 2 cut(s) 196, 371
BfoI RGCGCY 1 cut(s) 538
BglI GCCNNNNNGGC 1 cut(s) 543
BglII AGATCT 2 cut(s) 149, 200
BisI GCNGC 3 cut(s) 167, 320, 562
BlsI GCNGC 3 cut(s) 168, 321, 563
BmcAI AGTACT 1 cut(s) 424
Bme1390I CCNGG 3 cut(s) 272, 395, 401
Bme18I GGWCC 2 cut(s) 397, 487
BmeRI GACNNNNNGTC 1 cut(s) 454
BmeT110I CYCGRG 1 cut(s) 378
BmgT120I GGNCC 2 cut(s) 397, 487
BmiI GGNNCC 6 cut(s) 85, 210, 323, 399, 405, 411
BmrFI CCNGG 3 cut(s) 272, 395, 401
BmsI GCATC 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 450
BpmI CTGGAG 3 cut(s) 26, 308, 335
BpuMI CCSGG 2 cut(s) 395, 401
BsaBI GATNNNNATC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 239
BsaJI CCNNGG 2 cut(s) 79, 270
BsaWI WCCGGW 2 cut(s) 205, 406
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 3 cut(s) 385, 400, 406
Bse118I RCCGGY 1 cut(s) 211
Bse1I ACTGG 2 cut(s) 325, 340
Bse3DI GCAATG 1 cut(s) 66
Bse8I GATNNNNATC 1 cut(s) 56
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 2 cut(s) 79, 270
BseGI GGATG 1 cut(s) 487
BseJI GATNNNNATC 1 cut(s) 56
BseLI CCNNNNNNNGG 3 cut(s) 385, 400, 406
BseMI GCAATG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 325, 340
BseRI GAGGAG 3 cut(s) 26, 29, 479
BseXI GCAGC 1 cut(s) 178
BseYI CCCAGC 1 cut(s) 531
Bsh1236I CGCG 1 cut(s) 561
BshFI GGCC 2 cut(s) 215, 470
BshNI GGYRCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 435
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 6 cut(s) 206, 212, 395, 401, 407, 471
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 3 cut(s) 385, 400, 406
BsmAI GTCTC 2 cut(s) 239, 375
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 2 cut(s) 215, 470
Bso31I GGTCTC 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 435
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 2 cut(s) 149, 200
BspACI CCGC 6 cut(s) 169, 263, 319, 368, 561, 564
BspANI GGCC 2 cut(s) 215, 470
BspEI TCCGGA 1 cut(s) 205
BspFNI CGCG 1 cut(s) 561
BspHI TCATGA 2 cut(s) 48, 439
BspLI GGNNCC 6 cut(s) 85, 210, 323, 399, 405, 411
BspT107I GGYRCC 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 239
BsrBI CCGCTC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 211
BsrI ACTGG 2 cut(s) 325, 340
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 2 cut(s) 79, 270
BssMI GATC 2 cut(s) 149, 200
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 25
Bst6I CTCTTC 3 cut(s) 35, 447, 456
BstC8I GCNNGC 2 cut(s) 267, 368
BstF5I GGATG 1 cut(s) 487
BstFNI CGCG 1 cut(s) 561
BstH2I RGCGCY 1 cut(s) 538
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 2 cut(s) 152, 203
BstMAI GTCTC 2 cut(s) 239, 375
BstMBI GATC 2 cut(s) 149, 200
BstMWI GCNNNNNNNGC 3 cut(s) 319, 543, 558
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 3 cut(s) 270, 393, 399
BstSFI CTRYAG 2 cut(s) 196, 371
BstUI CGCG 1 cut(s) 561
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 450
BstX2I RGATCY 2 cut(s) 149, 200
BstYI RGATCY 2 cut(s) 149, 200
BsuRI GGCC 2 cut(s) 215, 470
BtsCI GGATG 1 cut(s) 487
Cac8I GCNNGC 2 cut(s) 267, 368
CciI TCATGA 2 cut(s) 48, 439
CfoI GCGC 1 cut(s) 537
Cfr10I RCCGGY 1 cut(s) 211
Cfr13I GGNCC 2 cut(s) 397, 487
Csp6I GTAC 1 cut(s) 423
CviAII CATG 3 cut(s) 49, 310, 440
CviQI GTAC 1 cut(s) 423
DpnI GATC 2 cut(s) 151, 202
DpnII GATC 2 cut(s) 149, 200
DraI TTTAAA 1 cut(s) 595
DraIII CACNNNGTG 1 cut(s) 583
DrdI GACNNNNNNGTC 1 cut(s) 389
DriI GACNNNNNGTC 1 cut(s) 454
DseDI GACNNNNNNGTC 1 cut(s) 389
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 3 cut(s) 35, 447, 456
Eam1105I GACNNNNNGTC 1 cut(s) 454
EarI CTCTTC 3 cut(s) 35, 447, 456
EciI GGCGGA 1 cut(s) 579
Eco31I GGTCTC 1 cut(s) 239
Eco47I GGWCC 2 cut(s) 397, 487
Eco88I CYCGRG 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 270
FaeI CATG 3 cut(s) 52, 313, 443
FaiI YATR 6 cut(s) 50, 311, 441, 574, 590, 614
FaqI GGGAC 1 cut(s) 377
FatI CATG 3 cut(s) 48, 309, 439
FauI CCCGC 2 cut(s) 270, 375
Fnu4HI GCNGC 3 cut(s) 167, 320, 562
FokI GGATG 1 cut(s) 494
Fsp4HI GCNGC 3 cut(s) 167, 320, 562
FspBI CTAG 1 cut(s) 75
GlaI GCGC 1 cut(s) 536
GluI GCNGC 3 cut(s) 167, 320, 562
GsaI CCCAGC 1 cut(s) 535
GsuI CTGGAG 3 cut(s) 26, 308, 335
HaeII RGCGCY 1 cut(s) 538
HaeIII GGCC 2 cut(s) 215, 470
HapII CCGG 6 cut(s) 206, 212, 395, 401, 407, 471
HhaI GCGC 1 cut(s) 537
Hin1II CATG 3 cut(s) 52, 313, 443
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 3 cut(s) 239, 359, 455
HpaI GTTAAC 1 cut(s) 15
HpaII CCGG 6 cut(s) 206, 212, 395, 401, 407, 471
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 2 cut(s) 244, 460
Hpy188III TCNNGA 3 cut(s) 49, 206, 440
Hpy8I GTNNAC 1 cut(s) 15
Hpy99I CGWCG 1 cut(s) 452
HpyAV CCTTC 3 cut(s) 315, 340, 503
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 3 cut(s) 319, 543, 558
Hsp92II CATG 3 cut(s) 52, 313, 443
HspAI GCGC 1 cut(s) 535
Kpn2I TCCGGA 1 cut(s) 205
KspAI GTTAAC 1 cut(s) 15
Kzo9I GATC 2 cut(s) 149, 200
LmnI GCTCC 3 cut(s) 297, 316, 327
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 66
MaeI CTAG 1 cut(s) 75
MalI GATC 2 cut(s) 151, 202
MbiI CCGCTC 1 cut(s) 319
MboI GATC 2 cut(s) 149, 200
MboII GAAGA 7 cut(s) 22, 55, 455, 464, 473, 515, 518
MflI RGATCY 2 cut(s) 149, 200
MhlI GDGCHC 1 cut(s) 435
MluCI AATT 2 cut(s) 220, 491
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 2 cut(s) 438, 459
MnlI CCTC 9 cut(s) 38, 44, 47, 50, 89, 268, 457, 460, 478
MroI TCCGGA 1 cut(s) 205
MroXI GAANNNNTTC 1 cut(s) 304
MseI TTAA 2 cut(s) 14, 594
MslI CAYNNNNRTG 2 cut(s) 438, 611
MspA1I CMGCKG 2 cut(s) 9, 169
MspI CCGG 6 cut(s) 206, 212, 395, 401, 407, 471
MspR9I CCNGG 3 cut(s) 272, 395, 401
MvaI CCWGG 1 cut(s) 272
MvnI CGCG 1 cut(s) 561
MwoI GCNNNNNNNGC 3 cut(s) 319, 543, 558
NciI CCSGG 2 cut(s) 395, 401
NdeII GATC 2 cut(s) 149, 200
NlaIII CATG 3 cut(s) 52, 313, 443
NlaIV GGNNCC 6 cut(s) 85, 210, 323, 399, 405, 411
NmeAIII GCCGAG 1 cut(s) 60
PagI TCATGA 2 cut(s) 48, 439
PcsI WCGNNNNNNNCGW 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 304
PfeI GAWTC 2 cut(s) 239, 359
PfoI TCCNGGA 1 cut(s) 393
PkrI GCNGC 3 cut(s) 168, 321, 563
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
Psp6I CCWGG 1 cut(s) 270
PspFI CCCAGC 1 cut(s) 531
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 6 cut(s) 85, 210, 323, 399, 405, 411
PspPI GGNCC 2 cut(s) 397, 487
PsuI RGATCY 2 cut(s) 149, 200
PvuII CAGCTG 1 cut(s) 9
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 2 cut(s) 438, 611
SaqAI TTAA 2 cut(s) 14, 594
SatI GCNGC 3 cut(s) 167, 320, 562
Sau3AI GATC 2 cut(s) 149, 200
Sau96I GGNCC 2 cut(s) 397, 487
ScaI AGTACT 1 cut(s) 424
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 3 cut(s) 272, 395, 401
SduI GDGCHC 1 cut(s) 435
SetI ASST 5 cut(s) 11, 48, 279, 294, 514
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 2 cut(s) 196, 371
SinI GGWCC 2 cut(s) 397, 487
SmiMI CAYNNNNRTG 2 cut(s) 438, 611
Sse9I AATT 2 cut(s) 220, 491
SsiI CCGC 6 cut(s) 169, 263, 319, 368, 561, 564
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 3 cut(s) 270, 393, 399
TaaI ACNGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 279
TasI AATT 2 cut(s) 220, 491
TatI WGTACW 1 cut(s) 422
TauI GCSGC 2 cut(s) 322, 564
TfiI GAWTC 2 cut(s) 239, 359
Tru1I TTAA 2 cut(s) 14, 594
Tru9I TTAA 2 cut(s) 14, 594
TseI GCWGC 1 cut(s) 166
TspDTI ATGAA 4 cut(s) 17, 55, 456, 577
VpaK11BI GGWCC 2 cut(s) 397, 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 304
XspI CTAG 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.