Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008302

Physical Location & Seq

Genomic Coordinates Reverse (-)

3305886 .. 3306809

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTTTGAAGAATCTGTGACATCCCTGCCTTCTATTTGGGCTTCCATGAACAGCTGGTTCACTCCAACTGTCCTCTTCCTCCTCCTCAATGTCATGATTGGCACCATCGCCATTGCTTCAAACCTGGGCTCCACCCAGAAACACCAGGACCCGCAGCAGCACCCGAACCACCACCAAGGCGGAGGCCTCGCCAGATCTCCATCTATGCTGCAGAGGCTCAAATCCATCAACCTCTACCAGTACAGATCCCCGGAGCCACACGCCACCACTTTCGAGCAACACCCAGAAACTACCGAGGCCACACATTACGCTTTTAACCACACCCACGAGCTCGAACAGCTCCAATTGACCAGATCCCCTTCTCTGCTGCAGCGGCTCAAGTCCATCAATTTCTACCCATCTCAGCCCGCCGCCGCCGCCGCCGCCCCTCCGCACAAAACCCATAAGCCGGAATCCCACTTCGAGCAAGCTCCCGAGCACGACGAGTTCCCAGATGACGACCGTTTTGAAGAACACGAACACCCAGAACCAGAAACTCCAGATTTTTCAGAAGCAGGGGATAAACAGAGCAGTCTGGAGGAGGTTTTCAGTCAGCTGAAGCCGTTGCAGGACCACCATGTGAGCCGGACCAAGTCGGACACCAAGCCGGCGTCCGGCGAGGTGCCTGCCAAGCTCCCGAAGAAGATGAAGAAATCTGCGAGCTCCAAGTCTGCTTTCGCTCACTTTCCAGAGGATGATGTCGCCGAGATTCGCCGGCCGGCGACGATGAGGGAGAGGAAGGTGGCGAAGGCGGCGGAGGACGACGACGAGGTGGATGCGAAGGCGGATGATTTCATCAACAGGTTCAAGAACCAGCTGAAGTTGCAGCGGTTGGATTCGATCATAAGGTACAAGGACATGATTACTAGAGGGAGTGATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408 DUF761

Protein Analysis

308

Amino Acids

34.84

Weight (kDa)

6.05

Isoelectric Point (pI)

55.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4408	PF14364	10 - 40	7.9e-14	Domain of unknown function (DUF4408)
DUF761	PF05553	268 - 303	1.9e-16	Cotton fibre expressed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26110
fragaria_vesca	FvH4_2g31830
malus_domestica	MD08G1062500.v1.1 MD15G1059100.v1.1
prunus_persica	Prupe.1G411600_v2.0.a1
pyrus_communis	pycom08g05150 pycom08g05170 pycom15g05550
rosa_chinensis	RchiOBHm_Chr6g0310991
rosa_laevigata	RLG00000010444
rosa_multiflora	Rmu_co8298593.1_g000001 Rmu_co8387599.1_g000001 Rmu_sc0005220.1_g000004
rosa_roxburghii	Rroxscaffold_7G00158120
rosa_rugosa	Rorug06G0384700
rosa_samantha	Rh5BG107200 Rh6AG498500 Rh6BG508900 Rh6CG514800 Rh6DG501400
rosa_wichuraiana	Rw0G006860 Rw1G019270 Rw6G043400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	101, 661
AclWI	GGATC	2 cut(s)	240, 348
AcoI	YGGCCR	1 cut(s)	755
AcuI	CTGAAG	2 cut(s)	617, 878
AcyI	GRCGYC	1 cut(s)	650
AdeI	CACNNNGTG	1 cut(s)	619
AfaI	GTAC	2 cut(s)	242, 890
AfiI	CCNNNNNNNGG	2 cut(s)	448, 653
AgsI	TTSAA	4 cut(s)	8, 120, 509, 847
AjnI	CCWGG	2 cut(s)	123, 144
AjuI	GAANNNNNNNTTGG	2 cut(s)	698, 730
AluBI	AGCT	8 cut(s)	54, 331, 340, 470, 595, 673, 702, 856
AluI	AGCT	8 cut(s)	54, 331, 340, 470, 595, 673, 702, 856
Alw21I	GWGCWC	3 cut(s)	333, 480, 704
AlwI	GGATC	2 cut(s)	240, 348
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	3 cut(s)	184, 297, 755
ApeKI	GCWGC	6 cut(s)	154, 157, 208, 367, 370, 865
ArsI	GACNNNNNNTTYG	2 cut(s)	488, 520
AspS9I	GGNCC	3 cut(s)	148, 610, 627
AsuC2I	CCSGG	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	473
AvaII	GGWCC	3 cut(s)	148, 610, 627
BanI	GGYRCC	2 cut(s)	101, 661
BanII	GRGCYC	3 cut(s)	131, 333, 704
BauI	CACGAG	1 cut(s)	326
Bbv12I	GWGCWC	3 cut(s)	333, 480, 704
BbvI	GCAGC	6 cut(s)	166, 169, 195, 354, 382, 877
BccI	CCATC	5 cut(s)	113, 208, 233, 392, 406
BceAI	ACGGC	1 cut(s)	586
BcgI	CGANNNNNNTGC	4 cut(s)	647, 681, 797, 831
BciT130I	CCWGG	2 cut(s)	125, 146
BcnI	CCSGG	1 cut(s)	251
BfaI	CTAG	1 cut(s)	906
BfmI	CTRYAG	2 cut(s)	209, 368
BglII	AGATCT	1 cut(s)	194
Bme1390I	CCNGG	3 cut(s)	125, 146, 251
Bme18I	GGWCC	3 cut(s)	148, 610, 627
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	3 cut(s)	148, 610, 627
BmiI	GGNNCC	5 cut(s)	103, 130, 150, 255, 663
BmrFI	CCNGG	3 cut(s)	125, 146, 251
BmsI	GCATC	1 cut(s)	805
BpmI	CTGGAG	2 cut(s)	522, 596
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	650
BsaJI	CCNNGG	4 cut(s)	124, 175, 249, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	2 cut(s)	448, 653
Bse118I	RCCGGY	3 cut(s)	646, 753, 757
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	111
Bse8I	GATNNNNATC	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	125, 146
BseDI	CCNNGG	4 cut(s)	124, 175, 249, 294
BseGI	GGATG	4 cut(s)	20, 739, 820, 832
BseJI	GATNNNNATC	1 cut(s)	199
BseLI	CCNNNNNNNGG	2 cut(s)	448, 653
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	3 cut(s)	71, 74, 593
BseX3I	CGGCCG	1 cut(s)	755
BseXI	GCAGC	6 cut(s)	166, 169, 195, 354, 382, 877
Bsh1285I	CGRYCG	2 cut(s)	502, 758
BshFI	GGCC	3 cut(s)	186, 299, 757
BshNI	GGYRCC	2 cut(s)	101, 661
BsiEI	CGRYCG	2 cut(s)	502, 758
BsiHKAI	GWGCWC	3 cut(s)	333, 480, 704
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	7 cut(s)	251, 449, 625, 647, 654, 754, 758
BslI	CCNNNNNNNGG	2 cut(s)	448, 653
BsnI	GGCC	3 cut(s)	186, 299, 757
BsoBI	CYCGRG	1 cut(s)	473
Bsp1286I	GDGCHC	4 cut(s)	131, 333, 480, 704
Bsp143I	GATC	4 cut(s)	194, 245, 353, 879
BspANI	GGCC	3 cut(s)	186, 299, 757
BspCNI	CTCAG	1 cut(s)	415
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	5 cut(s)	103, 130, 150, 255, 663
BspMAI	CTGCAG	2 cut(s)	213, 372
BspPI	GGATC	2 cut(s)	240, 348
BspT107I	GGYRCC	2 cut(s)	101, 661
BsrDI	GCAATG	1 cut(s)	111
BsrFI	RCCGGY	3 cut(s)	646, 753, 757
BsrI	ACTGG	1 cut(s)	238
BssAI	RCCGGY	3 cut(s)	646, 753, 757
BssECI	CCNNGG	4 cut(s)	124, 175, 249, 294
BssMI	GATC	4 cut(s)	194, 245, 353, 879
BssNI	GRCGYC	1 cut(s)	650
BssSI	CACGAG	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	175
Bst2BI	CACGAG	1 cut(s)	326
Bst2UI	CCWGG	2 cut(s)	125, 146
Bst4CI	ACNGT	2 cut(s)	70, 503
Bst6I	CTCTTC	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	650
BstC8I	GCNNGC	7 cut(s)	408, 468, 648, 666, 700, 755, 759
BstDEI	CTNAG	1 cut(s)	402
BstF5I	GGATG	4 cut(s)	20, 739, 820, 832
BstKTI	GATC	4 cut(s)	197, 248, 356, 882
BstMBI	GATC	4 cut(s)	194, 245, 353, 879
BstMCI	CGRYCG	2 cut(s)	502, 758
BstMWI	GCNNNNNNNGC	9 cut(s)	214, 337, 373, 416, 419, 422, 670, 791, 862
BstNI	CCWGG	2 cut(s)	125, 146
BstSCI	CCNGG	3 cut(s)	123, 144, 249
BstSFI	CTRYAG	2 cut(s)	209, 368
BstV1I	GCAGC	6 cut(s)	166, 169, 195, 354, 382, 877
BstX2I	RGATCY	3 cut(s)	194, 245, 353
BstYI	RGATCY	3 cut(s)	194, 245, 353
BstZI	CGGCCG	1 cut(s)	755
BsuRI	GGCC	3 cut(s)	186, 299, 757
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	4 cut(s)	20, 739, 820, 832
Cac8I	GCNNGC	7 cut(s)	408, 468, 648, 666, 700, 755, 759
CciI	TCATGA	1 cut(s)	93
Cfr10I	RCCGGY	3 cut(s)	646, 753, 757
Cfr13I	GGNCC	3 cut(s)	148, 610, 627
CseI	GACGC	1 cut(s)	639
Csp6I	GTAC	2 cut(s)	241, 889
CviAII	CATG	4 cut(s)	46, 94, 617, 898
CviQI	GTAC	2 cut(s)	241, 889
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	4 cut(s)	196, 247, 355, 881
DpnII	GATC	4 cut(s)	194, 245, 353, 879
DraIII	CACNNNGTG	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	755
EagI	CGGCCG	1 cut(s)	755
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
EciI	GGCGGA	3 cut(s)	195, 809, 839
Ecl136II	GAGCTC	2 cut(s)	331, 702
EclXI	CGGCCG	1 cut(s)	755
Eco130I	CCWWGG	1 cut(s)	175
Eco147I	AGGCCT	1 cut(s)	186
Eco24I	GRGCYC	3 cut(s)	131, 333, 704
Eco47I	GGWCC	3 cut(s)	148, 610, 627
Eco52I	CGGCCG	1 cut(s)	755
Eco53kI	GAGCTC	2 cut(s)	331, 702
Eco57I	CTGAAG	2 cut(s)	617, 878
Eco88I	CYCGRG	1 cut(s)	473
EcoICRI	GAGCTC	2 cut(s)	331, 702
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRII	CCWGG	2 cut(s)	123, 144
EcoT14I	CCWWGG	1 cut(s)	175
EcoT38I	GRGCYC	3 cut(s)	131, 333, 704
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	4 cut(s)	49, 97, 620, 901
FaiI	YATR	7 cut(s)	47, 95, 206, 444, 618, 884, 899
FatI	CATG	4 cut(s)	45, 93, 616, 897
FauI	CCCGC	2 cut(s)	159, 415
FokI	GGATG	4 cut(s)	7, 746, 827, 839
FriOI	GRGCYC	3 cut(s)	131, 333, 704
FspBI	CTAG	1 cut(s)	906
GsuI	CTGGAG	2 cut(s)	522, 596
HaeIII	GGCC	3 cut(s)	186, 299, 757
HapII	CCGG	7 cut(s)	251, 449, 625, 647, 654, 754, 758
HgaI	GACGC	1 cut(s)	639
Hin1I	GRCGYC	1 cut(s)	650
Hin1II	CATG	4 cut(s)	49, 97, 620, 901
HinfI	GANTC	4 cut(s)	11, 452, 748, 875
HpaII	CCGG	7 cut(s)	251, 449, 625, 647, 654, 754, 758
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	2 cut(s)	550, 637
Hpy188III	TCNNGA	7 cut(s)	94, 473, 539, 575, 676, 728, 847
Hpy8I	GTNNAC	1 cut(s)	60
Hpy99I	CGWCG	4 cut(s)	485, 766, 806, 809
HpyAV	CCTTC	5 cut(s)	39, 369, 772, 781, 814
HpyCH4III	ACNGT	2 cut(s)	70, 503
HpyCH4V	TGCA	4 cut(s)	211, 370, 607, 865
HpyF10VI	GCNNNNNNNGC	9 cut(s)	214, 337, 373, 416, 419, 422, 670, 791, 862
HpyF3I	CTNAG	1 cut(s)	402
Hsp92I	GRCGYC	1 cut(s)	650
Hsp92II	CATG	4 cut(s)	49, 97, 620, 901
KroI	GCCGGC	3 cut(s)	646, 753, 757
KroNI	GCCGGC	3 cut(s)	648, 755, 759
Kzo9I	GATC	4 cut(s)	194, 245, 353, 879
LmnI	GCTCC	6 cut(s)	134, 253, 345, 475, 678, 707
Lsp1109I	GCAGC	6 cut(s)	166, 169, 195, 354, 382, 877
LweI	GCATC	1 cut(s)	805
MaeI	CTAG	1 cut(s)	906
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	4 cut(s)	196, 247, 355, 881
MboI	GATC	4 cut(s)	194, 245, 353, 879
MboII	GAAGA	6 cut(s)	20, 67, 521, 691, 694, 700
MfeI	CAATTG	1 cut(s)	344
MflI	RGATCY	3 cut(s)	194, 245, 353
MhlI	GDGCHC	4 cut(s)	131, 333, 480, 704
MluCI	AATT	2 cut(s)	344, 388
MmeI	TCCRAC	3 cut(s)	89, 615, 852
MroNI	GCCGGC	3 cut(s)	646, 753, 757
MseI	TTAA	1 cut(s)	315
MspA1I	CMGCKG	5 cut(s)	54, 373, 595, 856, 868
MspI	CCGG	7 cut(s)	251, 449, 625, 647, 654, 754, 758
MspR9I	CCNGG	3 cut(s)	125, 146, 251
MunI	CAATTG	1 cut(s)	344
MvaI	CCWGG	2 cut(s)	125, 146
MwoI	GCNNNNNNNGC	9 cut(s)	214, 337, 373, 416, 419, 422, 670, 791, 862
NaeI	GCCGGC	3 cut(s)	648, 755, 759
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	4 cut(s)	194, 245, 353, 879
NgoMIV	GCCGGC	3 cut(s)	646, 753, 757
NlaIII	CATG	4 cut(s)	49, 97, 620, 901
NlaIV	GGNNCC	5 cut(s)	103, 130, 150, 255, 663
NmeAIII	GCCGAG	1 cut(s)	769
NmuCI	GTSAC	1 cut(s)	16
PagI	TCATGA	1 cut(s)	93
PceI	AGGCCT	1 cut(s)	186
PdiI	GCCGGC	3 cut(s)	648, 755, 759
PfeI	GAWTC	4 cut(s)	11, 452, 748, 875
PflFI	GACNNNGTC	1 cut(s)	631
PpuMI	RGGWCCY	1 cut(s)	148
Psp124BI	GAGCTC	2 cut(s)	333, 704
Psp5II	RGGWCCY	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	123, 144
PspGI	CCWGG	2 cut(s)	123, 144
PspN4I	GGNNCC	5 cut(s)	103, 130, 150, 255, 663
PspPI	GGNCC	3 cut(s)	148, 610, 627
PspPPI	RGGWCCY	1 cut(s)	148
PstI	CTGCAG	2 cut(s)	213, 372
PsuI	RGATCY	3 cut(s)	194, 245, 353
PsyI	GACNNNGTC	1 cut(s)	631
PvuII	CAGCTG	3 cut(s)	54, 595, 856
RsaI	GTAC	2 cut(s)	242, 890
RsaNI	GTAC	2 cut(s)	241, 889
SacI	GAGCTC	2 cut(s)	333, 704
SaqAI	TTAA	1 cut(s)	315
Sau3AI	GATC	4 cut(s)	194, 245, 353, 879
Sau96I	GGNCC	3 cut(s)	148, 610, 627
ScrFI	CCNGG	3 cut(s)	125, 146, 251
SduI	GDGCHC	4 cut(s)	131, 333, 480, 704
SfaNI	GCATC	1 cut(s)	805
SfcI	CTRYAG	2 cut(s)	209, 368
SinI	GGWCC	3 cut(s)	148, 610, 627
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	2 cut(s)	344, 388
SseBI	AGGCCT	1 cut(s)	186
SspMI	CTAG	1 cut(s)	906
SstI	GAGCTC	2 cut(s)	333, 704
StuI	AGGCCT	1 cut(s)	186
StyD4I	CCNGG	3 cut(s)	123, 144, 249
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	2 cut(s)	70, 503
TaqI	TCGA	4 cut(s)	273, 333, 462, 878
TasI	AATT	2 cut(s)	344, 388
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	7 cut(s)	376, 413, 416, 419, 422, 425, 794
TfiI	GAWTC	4 cut(s)	11, 452, 748, 875
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	6 cut(s)	154, 157, 208, 367, 370, 865
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	3 cut(s)	62, 701, 823
Tth111I	GACNNNGTC	1 cut(s)	631
VpaK11BI	GGWCC	3 cut(s)	148, 610, 627
XspI	CTAG	1 cut(s)	906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.