Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008302

Physical Location & Seq

Genomic Coordinates Reverse (-)

9964886 .. 9968243

Gene Structure 3358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG107200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGATTGGCATCATCTTCATTGCTTCCAGCCTCGGCACCCAGAAGCCCCACGACCAAGACAACCACCACCACCACCACCAACAAGGCTTGGCGAGATCTCCCTTTGTTTTGCAGCGGTTCAAATCCATCAACTTCTACGCCTACAGATCTCCGGAACCGGCCACGAATTACAAAAAATCCCCTGAATCCGAGACCCATTTTGCTTTCCCGCATGCCCAGGAGGTCGAACAGCCCAAGCTCCCCAGATCTCCTTCCATGCTGGAGCGGCTCCAGTCCTTCAAGTTCCAGTTCCACTTCCCCAAAGAATCCAGCCCACTACAGCCCCGAGACTTCGCAGTCCCGGACCCGGAACCGGAACCCCATTTCAGTACTTACGAGCACTCTCATGAAGACGACGAAGAGTCGGAAGAGGAGGCCGGAGAGTTGGATGAGGACCAATTCGAAGCCGAAGAAGAAGTCACAAAAACCCTAAGACCTCCGAAATCCAAAGGGTTGGAATCAAGATTACATACCGTACATGCATGTCCATATGATTATTTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408 DUF761

Protein Analysis

181

Amino Acids

21.1

Weight (kDa)

5.32

Isoelectric Point (pI)

76.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26110
fragaria_vesca	FvH4_2g31830
malus_domestica	MD08G1062500.v1.1 MD15G1059100.v1.1
prunus_persica	Prupe.1G411600_v2.0.a1
pyrus_communis	pycom08g05150 pycom08g05170 pycom15g05550
rosa_chinensis	RchiOBHm_Chr6g0310991
rosa_laevigata	RLG00000010444
rosa_multiflora	Rmu_co8298593.1_g000001 Rmu_co8387599.1_g000001 Rmu_sc0005220.1_g000004
rosa_roxburghii	Rroxscaffold_7G00158120
rosa_rugosa	Rorug06G0384700
rosa_samantha	Rh5BG107200 Rh6AG498500 Rh6BG508900 Rh6CG514800 Rh6DG501400
rosa_wichuraiana	Rw0G006860 Rw1G019270 Rw6G043400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	35
AccBSI	CCGCTC	1 cut(s)	265
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	3 cut(s)	115, 209, 265
AcoI	YGGCCR	1 cut(s)	159
AfaI	GTAC	2 cut(s)	370, 516
AfiI	CCNNNNNNNGG	2 cut(s)	346, 352
AgsI	TTSAA	3 cut(s)	121, 280, 542
AhdI	GACNNNNNGTC	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	185, 321
Ama87I	CYCGRG	1 cut(s)	324
Aor13HI	TCCGGA	1 cut(s)	151
AoxI	GGCC	2 cut(s)	159, 414
ApeKI	GCWGC	1 cut(s)	112
ArsI	GACNNNNNNTTYG	2 cut(s)	441, 473
AspS9I	GGNCC	2 cut(s)	343, 433
AsuC2I	CCSGG	2 cut(s)	341, 347
AsuII	TTCGAA	1 cut(s)	441
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	2 cut(s)	343, 433
BanI	GGYRCC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	218
BcnI	CCSGG	2 cut(s)	341, 347
BcoDI	GTCTC	2 cut(s)	185, 321
BfmI	CTRYAG	2 cut(s)	142, 317
BglII	AGATCT	3 cut(s)	95, 146, 245
BisI	GCNGC	2 cut(s)	113, 266
BlsI	GCNGC	2 cut(s)	114, 267
BmcAI	AGTACT	1 cut(s)	370
Bme1390I	CCNGG	3 cut(s)	218, 341, 347
Bme18I	GGWCC	2 cut(s)	343, 433
BmeRI	GACNNNNNGTC	1 cut(s)	400
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	2 cut(s)	343, 433
BmiI	GGNNCC	6 cut(s)	37, 156, 269, 345, 351, 357
BmrFI	CCNGG	3 cut(s)	218, 341, 347
BmsI	GCATC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	396
BpmI	CTGGAG	2 cut(s)	254, 281
Bpu14I	TTCGAA	1 cut(s)	441
BpuMI	CCSGG	2 cut(s)	341, 347
BsaBI	GATNNNNATC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	31, 216
BsaWI	WCCGGW	2 cut(s)	151, 352
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 352
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	271, 286
Bse3DI	GCAATG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	8
BseAI	TCCGGA	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	31, 216
BseGI	GGATG	1 cut(s)	433
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	346, 352
BseMI	GCAATG	1 cut(s)	18
BseNI	ACTGG	2 cut(s)	271, 286
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	124
BshFI	GGCC	2 cut(s)	161, 416
BshNI	GGYRCC	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	6 cut(s)	152, 158, 341, 347, 353, 417
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	2 cut(s)	346, 352
BsmAI	GTCTC	2 cut(s)	185, 321
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	2 cut(s)	161, 416
Bso31I	GGTCTC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	324
Bsp119I	TTCGAA	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp13I	TCCGGA	1 cut(s)	151
Bsp143I	GATC	3 cut(s)	95, 146, 245
BspACI	CCGC	3 cut(s)	115, 209, 265
BspANI	GGCC	2 cut(s)	161, 416
BspEI	TCCGGA	1 cut(s)	151
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	6 cut(s)	37, 156, 269, 345, 351, 357
BspT104I	TTCGAA	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	271, 286
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	2 cut(s)	31, 216
BssMI	GATC	3 cut(s)	95, 146, 245
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	514
Bst6I	CTCTTC	2 cut(s)	393, 402
BstBI	TTCGAA	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	433
BstKTI	GATC	3 cut(s)	98, 149, 248
BstMAI	GTCTC	2 cut(s)	185, 321
BstMBI	GATC	3 cut(s)	95, 146, 245
BstMWI	GCNNNNNNNGC	1 cut(s)	265
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	3 cut(s)	215, 521, 525
BstSCI	CCNGG	3 cut(s)	216, 339, 345
BstSFI	CTRYAG	2 cut(s)	142, 317
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	396
BstX2I	RGATCY	3 cut(s)	95, 146, 245
BstXI	CCANNNNNNTGG	1 cut(s)	493
BstYI	RGATCY	3 cut(s)	95, 146, 245
BsuRI	GGCC	2 cut(s)	161, 416
BtsCI	GGATG	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	213
CciI	TCATGA	1 cut(s)	385
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	343, 433
Csp6I	GTAC	2 cut(s)	369, 515
CviAII	CATG	5 cut(s)	212, 256, 386, 518, 522
CviQI	GTAC	2 cut(s)	369, 515
DdeI	CTNAG	1 cut(s)	470
DpnI	GATC	3 cut(s)	97, 148, 247
DpnII	GATC	3 cut(s)	95, 146, 245
DrdI	GACNNNNNNGTC	1 cut(s)	335
DriI	GACNNNNNGTC	1 cut(s)	400
DseDI	GACNNNNNNGTC	1 cut(s)	335
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	2 cut(s)	393, 402
Eam1105I	GACNNNNNGTC	1 cut(s)	400
EarI	CTCTTC	2 cut(s)	393, 402
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	2 cut(s)	343, 433
Eco88I	CYCGRG	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	523
FaeI	CATG	5 cut(s)	215, 259, 389, 521, 525
FaiI	YATR	8 cut(s)	213, 257, 387, 510, 519, 523, 529, 531
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	5 cut(s)	211, 255, 385, 517, 521
FauI	CCCGC	1 cut(s)	216
FauNDI	CATATG	1 cut(s)	529
Fnu4HI	GCNGC	2 cut(s)	113, 266
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	2 cut(s)	113, 266
GluI	GCNGC	2 cut(s)	113, 266
GsuI	CTGGAG	2 cut(s)	254, 281
HaeIII	GGCC	2 cut(s)	161, 416
HapII	CCGG	6 cut(s)	152, 158, 341, 347, 353, 417
Hin1II	CATG	5 cut(s)	215, 259, 389, 521, 525
HinfI	GANTC	4 cut(s)	185, 305, 401, 497
HpaII	CCGG	6 cut(s)	152, 158, 341, 347, 353, 417
Hpy188I	TCNGA	3 cut(s)	190, 406, 480
Hpy188III	TCNNGA	3 cut(s)	152, 386, 501
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	2 cut(s)	261, 286
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4V	TGCA	2 cut(s)	112, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	265
HpyF3I	CTNAG	1 cut(s)	470
Hsp92II	CATG	5 cut(s)	215, 259, 389, 521, 525
Kpn2I	TCCGGA	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	95, 146, 245
LmnI	GCTCC	3 cut(s)	243, 262, 273
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	3 cut(s)	97, 148, 247
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	3 cut(s)	95, 146, 245
MboII	GAAGA	6 cut(s)	7, 401, 410, 419, 461, 464
MflI	RGATCY	3 cut(s)	95, 146, 245
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	2 cut(s)	166, 437
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	3 cut(s)	384, 405, 474
MnlI	CCTC	6 cut(s)	41, 214, 403, 406, 424, 486
Mph1103I	ATGCAT	1 cut(s)	523
MroI	TCCGGA	1 cut(s)	151
MslI	CAYNNNNRTG	1 cut(s)	384
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	6 cut(s)	152, 158, 341, 347, 353, 417
MspR9I	CCNGG	3 cut(s)	218, 341, 347
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	265
NciI	CCSGG	2 cut(s)	341, 347
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	3 cut(s)	95, 146, 245
NlaIII	CATG	5 cut(s)	215, 259, 389, 521, 525
NlaIV	GGNNCC	6 cut(s)	37, 156, 269, 345, 351, 357
NmeAIII	GCCGAG	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	457
NsiI	ATGCAT	1 cut(s)	523
NspI	RCATGY	3 cut(s)	215, 521, 525
NspV	TTCGAA	1 cut(s)	441
PaeI	GCATGC	1 cut(s)	215
PagI	TCATGA	1 cut(s)	385
PfeI	GAWTC	3 cut(s)	185, 305, 497
PfoI	TCCNGGA	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	114, 267
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	6 cut(s)	37, 156, 269, 345, 351, 357
PspPI	GGNCC	2 cut(s)	343, 433
PsuI	RGATCY	3 cut(s)	95, 146, 245
RsaI	GTAC	2 cut(s)	370, 516
RsaNI	GTAC	2 cut(s)	369, 515
RseI	CAYNNNNRTG	1 cut(s)	384
SatI	GCNGC	2 cut(s)	113, 266
Sau3AI	GATC	3 cut(s)	95, 146, 245
Sau96I	GGNCC	2 cut(s)	343, 433
ScaI	AGTACT	1 cut(s)	370
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	3 cut(s)	218, 341, 347
SduI	GDGCHC	1 cut(s)	381
SetI	ASST	3 cut(s)	225, 240, 478
SfaNI	GCATC	1 cut(s)	18
SfcI	CTRYAG	2 cut(s)	142, 317
SfuI	TTCGAA	1 cut(s)	441
SinI	GGWCC	2 cut(s)	343, 433
SmiMI	CAYNNNNRTG	1 cut(s)	384
SphI	GCATGC	1 cut(s)	215
Sse9I	AATT	2 cut(s)	166, 437
SsiI	CCGC	3 cut(s)	115, 209, 265
StyD4I	CCNGG	3 cut(s)	216, 339, 345
TaaI	ACNGT	1 cut(s)	514
TaqI	TCGA	2 cut(s)	225, 441
TasI	AATT	2 cut(s)	166, 437
TatI	WGTACW	1 cut(s)	368
TauI	GCSGC	1 cut(s)	268
TfiI	GAWTC	3 cut(s)	185, 305, 497
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	2 cut(s)	7, 402
VpaK11BI	GGWCC	2 cut(s)	343, 433
XceI	RCATGY	3 cut(s)	215, 521, 525
ZrmI	AGTACT	1 cut(s)	370
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.