Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008302

Physical Location & Seq

Genomic Coordinates Forward (+)

67285010 .. 67286098

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG514800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTTTGAGGAATCTGTATCCTCCCTACCCTCAATTTGGGCCTCCATGAACAGCTGGTTAACCCCAACTGTTCTCTTCCTCCTCCTCCAGCTCATGATTGGCACCATCTTCATGGCTTCCAGCTTAGGCACCCAGAAGCACCACGACCAAGACAACCACGACCAGCAACAGCAACAAGGCTTGGCGAGATCTCCCTCTGTTTTGCAGCGGTTCAAATCCATCAACTTCTACGCCTACAGATCTCCGGAACCGGCCACGAATTATGAAAAACCACCTGAATCCGAGACCCATTTCGCTTTCCCGCACGCCCAGGAGGTGGAACAGCCCAAACTCCCCAGATCTCCTTCCATGCTGGAGCGGCTCCAGTCCTTCAAGTTCCAGTTCCACTTCCCGAAAGAGTCCAGCCCGTTACAGCCCCGAGATTTCGCAGTCCCGGAACCCCATTTCAGTACTTACGAGCACTCTCATGAAGACGAAGAGTCGGAAGAGGAGGCAGGAGAGGCTGAAGAGTTGGATGAGGACCAATTCGAAGCCGAAGAAGAAGGTGAGGAGAAAGAGCAGACCCTGGACGAGATTTACAGCCAGCTAGATCTGCAGGACCACCACGTCAGCAGGACGACATCGGACACCCAGCCGGCTTCCGGCGACGTACCCGCGAAGCTGCCGAAGAAGATGAAGAAGTCGGCCAGCGCCAAGTCGGCATTTGCTCATTTCGAGGCGGCCGACATCGTGGAGAGCCGCCGGCCGGCGACCGTGAAGGAGAAGAAGGCAAAGGCGGCGGAGGACGACGCGGAGGTGGATTCGAAAGCCGATGACTTCATCAACAGGTTCAAGCAGCAGCTGAAGCTGCAGAGGCTGGACTCGATCATTAGGTACAAGGACATGGTCAACAGAGGAAGCGACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408 DUF761

Protein Analysis

302

Amino Acids

34.59

Weight (kDa)

4.99

Isoelectric Point (pI)

63.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4408	PF14364	10 - 42	7e-12	Domain of unknown function (DUF4408)
DUF761	PF05553	264 - 298	2.2e-16	Cotton fibre expressed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26110
fragaria_vesca	FvH4_2g31830
malus_domestica	MD08G1062500.v1.1 MD15G1059100.v1.1
prunus_persica	Prupe.1G411600_v2.0.a1
pyrus_communis	pycom08g05150 pycom08g05170 pycom15g05550
rosa_chinensis	RchiOBHm_Chr6g0310991
rosa_laevigata	RLG00000010444
rosa_multiflora	Rmu_co8298593.1_g000001 Rmu_co8387599.1_g000001 Rmu_sc0005220.1_g000004
rosa_roxburghii	Rroxscaffold_7G00158120
rosa_rugosa	Rorug06G0384700
rosa_samantha	Rh5BG107200 Rh6AG498500 Rh6BG508900 Rh6CG514800 Rh6DG501400
rosa_wichuraiana	Rw0G006860 Rw1G019270 Rw6G043400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	605
AccB1I	GGYRCC	2 cut(s)	101, 128
AccB7I	CCANNNNNTGG	1 cut(s)	316
AccBSI	CCGCTC	1 cut(s)	358
AccII	CGCG	2 cut(s)	656, 791
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	9 cut(s)	208, 302, 358, 654, 719, 739, 776, 779, 791
AcoI	YGGCCR	4 cut(s)	252, 684, 720, 743
AcuI	CTGAAG	2 cut(s)	525, 863
AfaI	GTAC	3 cut(s)	451, 651, 875
AfiI	CCNNNNNNNGG	4 cut(s)	36, 316, 641, 745
AgsI	TTSAA	3 cut(s)	214, 373, 832
AhdI	GACNNNNNGTC	1 cut(s)	478
AjiI	CACGTC	1 cut(s)	607
AjnI	CCWGG	2 cut(s)	309, 564
AluBI	AGCT	7 cut(s)	54, 91, 123, 586, 661, 841, 847
AluI	AGCT	7 cut(s)	54, 91, 123, 586, 661, 841, 847
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	1 cut(s)	278
AlwNI	CAGNNNCTG	3 cut(s)	565, 841, 856
Ama87I	CYCGRG	1 cut(s)	417
Aor13HI	TCCGGA	1 cut(s)	244
AoxI	GGCC	5 cut(s)	39, 252, 684, 720, 743
ApeKI	GCWGC	5 cut(s)	205, 661, 835, 838, 847
AspLEI	GCGC	1 cut(s)	692
AspS9I	GGNCC	3 cut(s)	39, 520, 598
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	557
AsuII	TTCGAA	2 cut(s)	528, 803
AvaI	CYCGRG	1 cut(s)	417
AvaII	GGWCC	2 cut(s)	520, 598
BanI	GGYRCC	2 cut(s)	101, 128
BbsI	GAAGAC	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	5 cut(s)	217, 648, 834, 847, 850
BccI	CCATC	2 cut(s)	113, 227
BciT130I	CCWGG	2 cut(s)	311, 566
BciVI	GTATCC	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	587
BfmI	CTRYAG	3 cut(s)	235, 593, 848
BfoI	RGCGCY	1 cut(s)	693
BfuI	GTATCC	1 cut(s)	28
BglI	GCCNNNNNGGC	1 cut(s)	698
BglII	AGATCT	4 cut(s)	188, 239, 338, 589
BisI	GCNGC	9 cut(s)	206, 359, 662, 720, 739, 777, 836, 839, 848
BlsI	GCNGC	9 cut(s)	207, 360, 663, 721, 740, 778, 837, 840, 849
BmcAI	AGTACT	1 cut(s)	451
Bme1390I	CCNGG	3 cut(s)	311, 434, 566
Bme18I	GGWCC	2 cut(s)	520, 598
BmeRI	GACNNNNNGTC	1 cut(s)	478
BmeT110I	CYCGRG	1 cut(s)	417
BmgBI	CACGTC	1 cut(s)	607
BmgT120I	GGNCC	3 cut(s)	39, 520, 598
BmiI	GGNNCC	5 cut(s)	103, 130, 249, 362, 438
BmrFI	CCNGG	3 cut(s)	311, 434, 566
BpiI	GAAGAC	1 cut(s)	477
BpmI	CTGGAG	3 cut(s)	71, 347, 374
Bpu10I	CCTNAGC	1 cut(s)	124
Bpu14I	TTCGAA	2 cut(s)	528, 803
BpuMI	CCSGG	1 cut(s)	434
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	309, 564
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 316, 641, 745
Bse118I	RCCGGY	4 cut(s)	250, 634, 741, 745
Bse1I	ACTGG	2 cut(s)	364, 379
BseAI	TCCGGA	1 cut(s)	244
BseBI	CCWGG	2 cut(s)	311, 566
BseDI	CCNNGG	2 cut(s)	309, 564
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	4 cut(s)	36, 316, 641, 745
BseNI	ACTGG	2 cut(s)	364, 379
BseRI	GAGGAG	4 cut(s)	71, 74, 503, 563
BseX3I	CGGCCG	2 cut(s)	720, 743
BseXI	GCAGC	5 cut(s)	217, 648, 834, 847, 850
BseYI	CCCAGC	1 cut(s)	630
Bsh1236I	CGCG	2 cut(s)	656, 791
Bsh1285I	CGRYCG	3 cut(s)	723, 746, 753
BshFI	GGCC	5 cut(s)	41, 254, 686, 722, 745
BshNI	GGYRCC	2 cut(s)	101, 128
BsiEI	CGRYCG	3 cut(s)	723, 746, 753
BsiHKAI	GWGCWC	1 cut(s)	462
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	7 cut(s)	245, 251, 434, 635, 642, 742, 746
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	4 cut(s)	36, 316, 641, 745
BsmAI	GTCTC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	5 cut(s)	41, 254, 686, 722, 745
Bso31I	GGTCTC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	417
Bsp119I	TTCGAA	2 cut(s)	528, 803
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp13I	TCCGGA	1 cut(s)	244
Bsp143I	GATC	5 cut(s)	188, 239, 338, 589, 864
BspACI	CCGC	9 cut(s)	208, 302, 358, 654, 719, 739, 776, 779, 791
BspANI	GGCC	5 cut(s)	41, 254, 686, 722, 745
BspEI	TCCGGA	1 cut(s)	244
BspFNI	CGCG	2 cut(s)	656, 791
BspHI	TCATGA	2 cut(s)	93, 466
BspLI	GGNNCC	5 cut(s)	103, 130, 249, 362, 438
BspMAI	CTGCAG	2 cut(s)	597, 852
BspT104I	TTCGAA	2 cut(s)	528, 803
BspT107I	GGYRCC	2 cut(s)	101, 128
BspTNI	GGTCTC	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	358
BsrFI	RCCGGY	4 cut(s)	250, 634, 741, 745
BsrI	ACTGG	2 cut(s)	364, 379
BssAI	RCCGGY	4 cut(s)	250, 634, 741, 745
BssECI	CCNNGG	2 cut(s)	309, 564
BssMI	GATC	5 cut(s)	188, 239, 338, 589, 864
Bst2UI	CCWGG	2 cut(s)	311, 566
Bst4CI	ACNGT	2 cut(s)	70, 754
Bst6I	CTCTTC	4 cut(s)	80, 471, 480, 501
BstBI	TTCGAA	2 cut(s)	528, 803
BstC8I	GCNNGC	6 cut(s)	306, 584, 636, 688, 743, 747
BstDEI	CTNAG	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	520
BstFNI	CGCG	2 cut(s)	656, 791
BstH2I	RGCGCY	1 cut(s)	693
BstHHI	GCGC	1 cut(s)	692
BstKTI	GATC	5 cut(s)	191, 242, 341, 592, 867
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	5 cut(s)	188, 239, 338, 589, 864
BstMCI	CGRYCG	3 cut(s)	723, 746, 753
BstMWI	GCNNNNNNNGC	8 cut(s)	358, 500, 592, 698, 776, 844, 847, 853
BstNI	CCWGG	2 cut(s)	311, 566
BstSCI	CCNGG	3 cut(s)	309, 432, 564
BstSFI	CTRYAG	3 cut(s)	235, 593, 848
BstUI	CGCG	2 cut(s)	656, 791
BstV1I	GCAGC	5 cut(s)	217, 648, 834, 847, 850
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	4 cut(s)	188, 239, 338, 589
BstXI	CCANNNNNNTGG	1 cut(s)	112
BstYI	RGATCY	4 cut(s)	188, 239, 338, 589
BstZI	CGGCCG	2 cut(s)	720, 743
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	5 cut(s)	41, 254, 686, 722, 745
BtrI	CACGTC	1 cut(s)	607
BtsCI	GGATG	1 cut(s)	520
Cac8I	GCNNGC	6 cut(s)	306, 584, 636, 688, 743, 747
CaiI	CAGNNNCTG	3 cut(s)	565, 841, 856
CciI	TCATGA	2 cut(s)	93, 466
CfoI	GCGC	1 cut(s)	692
Cfr10I	RCCGGY	4 cut(s)	250, 634, 741, 745
Cfr13I	GGNCC	3 cut(s)	39, 520, 598
CseI	GACGC	1 cut(s)	797
Csp6I	GTAC	3 cut(s)	450, 650, 874
CviAII	CATG	6 cut(s)	46, 94, 112, 349, 467, 883
CviQI	GTAC	3 cut(s)	450, 650, 874
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	5 cut(s)	190, 241, 340, 591, 866
DpnII	GATC	5 cut(s)	188, 239, 338, 589, 864
DrdI	GACNNNNNNGTC	1 cut(s)	605
DriI	GACNNNNNGTC	1 cut(s)	478
DseDI	GACNNNNNNGTC	1 cut(s)	605
EaeI	YGGCCR	4 cut(s)	252, 684, 720, 743
EagI	CGGCCG	2 cut(s)	720, 743
Eam1104I	CTCTTC	4 cut(s)	80, 471, 480, 501
Eam1105I	GACNNNNNGTC	1 cut(s)	478
EarI	CTCTTC	4 cut(s)	80, 471, 480, 501
EciI	GGCGGA	1 cut(s)	794
EclXI	CGGCCG	2 cut(s)	720, 743
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	2 cut(s)	520, 598
Eco52I	CGGCCG	2 cut(s)	720, 743
Eco57I	CTGAAG	2 cut(s)	525, 863
Eco88I	CYCGRG	1 cut(s)	417
EcoRII	CCWGG	2 cut(s)	309, 564
FaeI	CATG	6 cut(s)	49, 97, 115, 352, 470, 886
FaiI	YATR	7 cut(s)	47, 95, 113, 264, 350, 468, 884
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	6 cut(s)	45, 93, 111, 348, 466, 882
FauI	CCCGC	2 cut(s)	309, 661
Fnu4HI	GCNGC	9 cut(s)	206, 359, 662, 720, 739, 777, 836, 839, 848
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	9 cut(s)	206, 359, 662, 720, 739, 777, 836, 839, 848
FspBI	CTAG	1 cut(s)	587
GlaI	GCGC	1 cut(s)	691
GluI	GCNGC	9 cut(s)	206, 359, 662, 720, 739, 777, 836, 839, 848
GsaI	CCCAGC	1 cut(s)	634
GsuI	CTGGAG	3 cut(s)	71, 347, 374
HaeII	RGCGCY	1 cut(s)	693
HaeIII	GGCC	5 cut(s)	41, 254, 686, 722, 745
HapII	CCGG	7 cut(s)	245, 251, 434, 635, 642, 742, 746
HgaI	GACGC	1 cut(s)	797
HhaI	GCGC	1 cut(s)	692
Hin1II	CATG	6 cut(s)	49, 97, 115, 352, 470, 886
Hin6I	GCGC	1 cut(s)	690
HinP1I	GCGC	1 cut(s)	690
HincII	GTYRAC	2 cut(s)	60, 889
HindII	GTYRAC	2 cut(s)	60, 889
HinfI	GANTC	6 cut(s)	11, 278, 398, 479, 800, 860
HpaI	GTTAAC	1 cut(s)	60
HpaII	CCGG	7 cut(s)	245, 251, 434, 635, 642, 742, 746
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	2 cut(s)	60, 889
Hpy188I	TCNGA	3 cut(s)	283, 484, 625
Hpy188III	TCNNGA	4 cut(s)	94, 245, 391, 467
Hpy8I	GTNNAC	2 cut(s)	60, 889
Hpy99I	CGWCG	2 cut(s)	650, 791
HpyAV	CCTTC	5 cut(s)	354, 379, 536, 751, 760
HpyCH4III	ACNGT	2 cut(s)	70, 754
HpyCH4IV	ACGT	2 cut(s)	606, 648
HpyCH4V	TGCA	3 cut(s)	205, 595, 850
HpyF10VI	GCNNNNNNNGC	8 cut(s)	358, 500, 592, 698, 776, 844, 847, 853
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	2 cut(s)	606, 648
Hsp92II	CATG	6 cut(s)	49, 97, 115, 352, 470, 886
HspAI	GCGC	1 cut(s)	690
Kpn2I	TCCGGA	1 cut(s)	244
KroI	GCCGGC	3 cut(s)	634, 741, 745
KroNI	GCCGGC	3 cut(s)	636, 743, 747
KspAI	GTTAAC	1 cut(s)	60
Kzo9I	GATC	5 cut(s)	188, 239, 338, 589, 864
LmnI	GCTCC	2 cut(s)	355, 366
Lsp1109I	GCAGC	5 cut(s)	217, 648, 834, 847, 850
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	2 cut(s)	606, 648
MaeIII	GTNAC	1 cut(s)	408
MalI	GATC	5 cut(s)	190, 241, 340, 591, 866
MbiI	CCGCTC	1 cut(s)	358
MboI	GATC	5 cut(s)	188, 239, 338, 589, 864
MflI	RGATCY	4 cut(s)	188, 239, 338, 589
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	3 cut(s)	33, 259, 524
MlyI	GAGTC	3 cut(s)	407, 488, 854
MmeI	TCCRAC	2 cut(s)	462, 492
MroI	TCCGGA	1 cut(s)	244
MroNI	GCCGGC	3 cut(s)	634, 741, 745
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	2 cut(s)	110, 465
MspA1I	CMGCKG	3 cut(s)	54, 208, 841
MspI	CCGG	7 cut(s)	245, 251, 434, 635, 642, 742, 746
MspR9I	CCNGG	3 cut(s)	311, 434, 566
MvaI	CCWGG	2 cut(s)	311, 566
MvnI	CGCG	2 cut(s)	656, 791
MwoI	GCNNNNNNNGC	8 cut(s)	358, 500, 592, 698, 776, 844, 847, 853
NaeI	GCCGGC	3 cut(s)	636, 743, 747
NciI	CCSGG	1 cut(s)	434
NdeII	GATC	5 cut(s)	188, 239, 338, 589, 864
NgoMIV	GCCGGC	3 cut(s)	634, 741, 745
NlaIII	CATG	6 cut(s)	49, 97, 115, 352, 470, 886
NlaIV	GGNNCC	5 cut(s)	103, 130, 249, 362, 438
NspV	TTCGAA	2 cut(s)	528, 803
PagI	TCATGA	2 cut(s)	93, 466
PcsI	WCGNNNNNNNCGW	1 cut(s)	720
PdiI	GCCGGC	3 cut(s)	636, 743, 747
PfeI	GAWTC	3 cut(s)	11, 278, 800
PflFI	GACNNNGTC	1 cut(s)	884
PflMI	CCANNNNNTGG	1 cut(s)	316
PfoI	TCCNGGA	1 cut(s)	432
PkrI	GCNGC	9 cut(s)	207, 360, 663, 721, 740, 778, 837, 840, 849
PleI	GAGTC	3 cut(s)	406, 487, 854
PpsI	GAGTC	3 cut(s)	406, 487, 854
Psp6I	CCWGG	2 cut(s)	309, 564
PspFI	CCCAGC	1 cut(s)	630
PspGI	CCWGG	2 cut(s)	309, 564
PspN4I	GGNNCC	5 cut(s)	103, 130, 249, 362, 438
PspPI	GGNCC	3 cut(s)	39, 520, 598
PstI	CTGCAG	2 cut(s)	597, 852
PstNI	CAGNNNCTG	3 cut(s)	565, 841, 856
PsuI	RGATCY	4 cut(s)	188, 239, 338, 589
PsyI	GACNNNGTC	1 cut(s)	884
PvuII	CAGCTG	2 cut(s)	54, 841
RsaI	GTAC	3 cut(s)	451, 651, 875
RsaNI	GTAC	3 cut(s)	450, 650, 874
RseI	CAYNNNNRTG	2 cut(s)	110, 465
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	9 cut(s)	206, 359, 662, 720, 739, 777, 836, 839, 848
Sau3AI	GATC	5 cut(s)	188, 239, 338, 589, 864
Sau96I	GGNCC	3 cut(s)	39, 520, 598
ScaI	AGTACT	1 cut(s)	451
SchI	GAGTC	3 cut(s)	407, 488, 854
ScrFI	CCNGG	3 cut(s)	311, 434, 566
SduI	GDGCHC	1 cut(s)	462
SfcI	CTRYAG	3 cut(s)	235, 593, 848
SfuI	TTCGAA	2 cut(s)	528, 803
SinI	GGWCC	2 cut(s)	520, 598
SmiMI	CAYNNNNRTG	2 cut(s)	110, 465
Sse9I	AATT	3 cut(s)	33, 259, 524
SsiI	CCGC	9 cut(s)	208, 302, 358, 654, 719, 739, 776, 779, 791
SspMI	CTAG	1 cut(s)	587
StyD4I	CCNGG	3 cut(s)	309, 432, 564
TaaI	ACNGT	2 cut(s)	70, 754
TaiI	ACGT	2 cut(s)	609, 651
TaqI	TCGA	4 cut(s)	528, 714, 803, 863
TasI	AATT	3 cut(s)	33, 259, 524
TatI	WGTACW	1 cut(s)	449
TauI	GCSGC	4 cut(s)	361, 722, 741, 779
TfiI	GAWTC	3 cut(s)	11, 278, 800
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TseI	GCWGC	5 cut(s)	205, 661, 835, 838, 847
TspDTI	ATGAA	6 cut(s)	62, 100, 279, 483, 689, 808
Tth111I	GACNNNGTC	1 cut(s)	884
Van91I	CCANNNNNTGG	1 cut(s)	316
VpaK11BI	GGWCC	2 cut(s)	520, 598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XspI	CTAG	1 cut(s)	587
ZrmI	AGTACT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.