Rh6AG498500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0008302
Physical Location & Seq
Forward (+)
67406285 .. 67420253
13969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG498500.1

Sequence Viewer

Length: 1107 bp
ATGCTGGAGCAGCTCCAATCCAAGTTCCAGTTGCACTTCCCGAAAGGGTCCAGCCCGCTACAGCCCCGAGATTTCGCAGCCCCGGAACCCCATTTCAGTACTTACGAGCACTCTCATGAAGACGAAGAGTCGGAAGAGGAGGCCAAAGAGGCTGAAGAGTTGGATGAGGACCAATTCGAAGCCAAAGAAGAAGAAGAAGAACAGACCCTGGACGAGGTTTACAGCCAGCTACATCTGCAGGACCACCACGTCAGCAGGACGAAATCGGACACCAAGCCGGCTTCCGGCGACTTACCCGCGAAGCTGCCGAAGAAGATGAAGAAGTCGGCCAGCGCCAAGTCGGCATTTGCTCATTTCGAGGCGGACGACATCGTGGAGAGCCGCCGGCCGGCGACCGTGAAGGAGAAGAAGGCAAAGGCGGCGGAGGACGACGCGGAGGTGGATTCGAAAGCCGATGACTTCATCAACAGGTTCAAGCAGCAGCTGAAGCTGCAGAGGCTGGACTCGATCATTAGGTACAAGGACACGGTCAACAGAGGAAGCGACAATTTGCCAGGTGAAGTTTGGGGTTGGGCACTGTTCTATGCAGGAATAGCAGGGCTGGCTTTTGGGTCTGCTTATTATCATTTGAAGCCTGATGATAGTAGAGTGACTTGGGATACCTTGCCGATGATGATCGCATTCTCCTCGCTTTTCTCTAGTTTTATAGTGGAGAGAGTGGGAGAGAGAATTGGCTTAAGTTGTCTATTTGCACTCCTCGTTATTGCGGTTCTCAGTACTGCTTATGAGAGAACATGCAATGATATCAGATTGTACATGATGTTCCAATTGATTCCATGTATAGCAATTCCAGGAATGACATTTGTGTTCCCACCCAAATATACTCACTCAAGATATTGGCTTTGGGCAGCAGGGGCTTACATTCTCTCCAAATTTGAAGCTTTTGCTGACATGAAAATATACCATGCAAATCGGTACACTATCAGTGGGCACTCTTTGGAGCATTTGTGTTTAGTAATCGTCCCTGTTCTGCTCAGTATTATGCTCGTGCACAGAAACAGGAAATGTCAAAGGTACTTTAGTTTCTGCAGTTTTGTAATTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ceramidase

Protein Analysis

368

Amino Acids

42.17

Weight (kDa)

5.72

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 145 - 179 3.4e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
AccII CGCG 2 cut(s) 299, 434
AciI CCGC 8 cut(s) 56, 297, 362, 382, 419, 422, 434, 767
AcoI YGGCCR 2 cut(s) 327, 386
AcsI RAATTY 1 cut(s) 932
AcuI CTGAAG 2 cut(s) 174, 506
AfaI GTAC 6 cut(s) 100, 518, 778, 815, 977, 1076
AfiI CCNNNNNNNGG 3 cut(s) 214, 284, 388
AflII CTTAAG 1 cut(s) 736
AgsI TTSAA 3 cut(s) 475, 631, 938
AhdI GACNNNNNGTC 1 cut(s) 127
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 3 cut(s) 207, 553, 850
AluBI AGCT 6 cut(s) 13, 229, 304, 484, 490, 941
AluI AGCT 6 cut(s) 13, 229, 304, 484, 490, 941
Alw21I GWGCWC 2 cut(s) 111, 1053
Alw44I GTGCAC 1 cut(s) 1049
AlwNI CAGNNNCTG 3 cut(s) 208, 484, 499
Ama87I CYCGRG 1 cut(s) 66
AoxI GGCC 3 cut(s) 141, 327, 386
ApaLI GTGCAC 1 cut(s) 1049
ApeKI GCWGC 7 cut(s) 10, 77, 304, 478, 481, 490, 908
ApoI RAATTY 1 cut(s) 932
AspLEI GCGC 1 cut(s) 335
AspS9I GGNCC 3 cut(s) 48, 169, 241
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 569
AsuII TTCGAA 2 cut(s) 177, 446
AvaI CYCGRG 1 cut(s) 66
AvaII GGWCC 3 cut(s) 48, 169, 241
BaeGI GKGCMC 3 cut(s) 577, 993, 1053
BaeI ACNNNNGTAYC 2 cut(s) 1066, 1099
BauI CACGAG 1 cut(s) 1046
BbsI GAAGAC 1 cut(s) 126
Bbv12I GWGCWC 2 cut(s) 111, 1053
BbvI GCAGC 7 cut(s) 22, 89, 291, 477, 490, 493, 920
BcgI CGANNNNNNTGC 2 cut(s) 669, 703
BciT130I CCWGG 3 cut(s) 209, 555, 852
BciVI GTATCC 1 cut(s) 652
BcnI CCSGG 1 cut(s) 83
BfaI CTAG 1 cut(s) 699
BfmI CTRYAG 4 cut(s) 59, 236, 491, 1087
BfoI RGCGCY 1 cut(s) 336
BfrI CTTAAG 1 cut(s) 736
BfuI GTATCC 1 cut(s) 652
BglI GCCNNNNNGGC 2 cut(s) 149, 341
BisI GCNGC 9 cut(s) 11, 78, 305, 382, 420, 479, 482, 491, 909
BlsI GCNGC 9 cut(s) 12, 79, 306, 383, 421, 480, 483, 492, 910
BmcAI AGTACT 2 cut(s) 100, 778
Bme1390I CCNGG 4 cut(s) 83, 209, 555, 852
Bme18I GGWCC 3 cut(s) 48, 169, 241
BmeRI GACNNNNNGTC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 66
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 3 cut(s) 48, 169, 241
BmiI GGNNCC 2 cut(s) 49, 87
BmrFI CCNGG 4 cut(s) 83, 209, 555, 852
BpiI GAAGAC 1 cut(s) 126
BpmI CTGGAG 1 cut(s) 26
Bpu14I TTCGAA 2 cut(s) 177, 446
BpuEI CTTGAG 1 cut(s) 874
BpuMI CCSGG 1 cut(s) 83
BsaBI GATNNNNATC 1 cut(s) 674
BsaJI CCNNGG 2 cut(s) 81, 207
BsaXI ACNNNNNCTCC 4 cut(s) 911, 941, 992, 1022
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 284, 388
Bse118I RCCGGY 3 cut(s) 277, 384, 388
Bse1I ACTGG 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 805
Bse8I GATNNNNATC 1 cut(s) 674
BseBI CCWGG 3 cut(s) 209, 555, 852
BseDI CCNNGG 2 cut(s) 81, 207
BseGI GGATG 1 cut(s) 169
BseJI GATNNNNATC 1 cut(s) 674
BseLI CCNNNNNNNGG 3 cut(s) 214, 284, 388
BseMI GCAATG 1 cut(s) 805
BseMII CTCAG 2 cut(s) 787, 1048
BseNI ACTGG 1 cut(s) 28
BseRI GAGGAG 3 cut(s) 152, 676, 746
BseSI GKGCMC 3 cut(s) 577, 993, 1053
BseX3I CGGCCG 1 cut(s) 386
BseXI GCAGC 7 cut(s) 22, 89, 291, 477, 490, 493, 920
Bsh1236I CGCG 2 cut(s) 299, 434
Bsh1285I CGRYCG 2 cut(s) 389, 396
BshFI GGCC 3 cut(s) 143, 329, 388
BsiEI CGRYCG 2 cut(s) 389, 396
BsiHKAI GWGCWC 2 cut(s) 111, 1053
BsiHKCI CYCGRG 1 cut(s) 66
BsiSI CCGG 5 cut(s) 83, 278, 285, 385, 389
BslFI GGGAC 1 cut(s) 1007
BslI CCNNNNNNNGG 3 cut(s) 214, 284, 388
BsmFI GGGAC 1 cut(s) 1007
BsmI GAATGC 1 cut(s) 680
BsnI GGCC 3 cut(s) 143, 329, 388
BsoBI CYCGRG 1 cut(s) 66
Bsp119I TTCGAA 2 cut(s) 177, 446
Bsp1286I GDGCHC 4 cut(s) 111, 577, 993, 1053
Bsp1407I TGTACA 1 cut(s) 813
Bsp143I GATC 2 cut(s) 507, 675
BspACI CCGC 8 cut(s) 56, 297, 362, 382, 419, 422, 434, 767
BspANI GGCC 3 cut(s) 143, 329, 388
BspCNI CTCAG 2 cut(s) 786, 1047
BspFNI CGCG 2 cut(s) 299, 434
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 49, 87
BspMAI CTGCAG 3 cut(s) 240, 495, 1091
BspT104I TTCGAA 2 cut(s) 177, 446
BspTI CTTAAG 1 cut(s) 736
BsrDI GCAATG 1 cut(s) 805
BsrFI RCCGGY 3 cut(s) 277, 384, 388
BsrGI TGTACA 1 cut(s) 813
BsrI ACTGG 1 cut(s) 28
BssAI RCCGGY 3 cut(s) 277, 384, 388
BssECI CCNNGG 2 cut(s) 81, 207
BssMI GATC 2 cut(s) 507, 675
BssSI CACGAG 1 cut(s) 1046
Bst2BI CACGAG 1 cut(s) 1046
Bst2UI CCWGG 3 cut(s) 209, 555, 852
Bst4CI ACNGT 3 cut(s) 397, 529, 579
Bst6I CTCTTC 3 cut(s) 120, 129, 150
BstAFI CTTAAG 1 cut(s) 736
BstAUI TGTACA 1 cut(s) 813
BstBI TTCGAA 2 cut(s) 177, 446
BstC8I GCNNGC 7 cut(s) 56, 227, 279, 331, 386, 390, 603
BstDEI CTNAG 2 cut(s) 773, 1034
BstENI CCTNNNNNAGG 1 cut(s) 212
BstF5I GGATG 1 cut(s) 169
BstFNI CGCG 2 cut(s) 299, 434
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 2 cut(s) 510, 678
BstMBI GATC 2 cut(s) 507, 675
BstMCI CGRYCG 2 cut(s) 389, 396
BstNI CCWGG 3 cut(s) 209, 555, 852
BstNSI RCATGY 1 cut(s) 798
BstSCI CCNGG 4 cut(s) 81, 207, 553, 850
BstSFI CTRYAG 4 cut(s) 59, 236, 491, 1087
BstSLI GKGCMC 3 cut(s) 577, 993, 1053
BstUI CGCG 2 cut(s) 299, 434
BstV1I GCAGC 7 cut(s) 22, 89, 291, 477, 490, 493, 920
BstV2I GAAGAC 1 cut(s) 126
BstZI CGGCCG 1 cut(s) 386
BsuI GTATCC 1 cut(s) 652
BsuRI GGCC 3 cut(s) 143, 329, 388
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 575, 991
Cac8I GCNNGC 7 cut(s) 56, 227, 279, 331, 386, 390, 603
CaiI CAGNNNCTG 3 cut(s) 208, 484, 499
CciI TCATGA 1 cut(s) 115
CfoI GCGC 1 cut(s) 335
Cfr10I RCCGGY 3 cut(s) 277, 384, 388
Cfr13I GGNCC 3 cut(s) 48, 169, 241
CseI GACGC 1 cut(s) 440
Csp6I GTAC 6 cut(s) 99, 517, 777, 814, 976, 1075
CviAII CATG 6 cut(s) 116, 795, 817, 837, 952, 965
CviQI GTAC 6 cut(s) 99, 517, 777, 814, 976, 1075
DdeI CTNAG 2 cut(s) 773, 1034
DpnI GATC 2 cut(s) 509, 677
DpnII GATC 2 cut(s) 507, 675
DrdI GACNNNNNNGTC 1 cut(s) 248
DriI GACNNNNNGTC 1 cut(s) 127
DseDI GACNNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 2 cut(s) 327, 386
EagI CGGCCG 1 cut(s) 386
Eam1104I CTCTTC 3 cut(s) 120, 129, 150
Eam1105I GACNNNNNGTC 1 cut(s) 127
EarI CTCTTC 3 cut(s) 120, 129, 150
EciI GGCGGA 2 cut(s) 377, 437
EclXI CGGCCG 1 cut(s) 386
Eco32I GATATC 1 cut(s) 805
Eco47I GGWCC 3 cut(s) 48, 169, 241
Eco52I CGGCCG 1 cut(s) 386
Eco57I CTGAAG 2 cut(s) 174, 506
Eco88I CYCGRG 1 cut(s) 66
EcoNI CCTNNNNNAGG 1 cut(s) 212
EcoRII CCWGG 3 cut(s) 207, 553, 850
EcoRV GATATC 1 cut(s) 805
FaeI CATG 6 cut(s) 119, 798, 820, 840, 955, 968
FaqI GGGAC 1 cut(s) 1007
FatI CATG 6 cut(s) 115, 794, 816, 836, 951, 964
FauI CCCGC 2 cut(s) 63, 304
Fnu4HI GCNGC 9 cut(s) 11, 78, 305, 382, 420, 479, 482, 491, 909
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 9 cut(s) 11, 78, 305, 382, 420, 479, 482, 491, 909
FspBI CTAG 1 cut(s) 699
GlaI GCGC 1 cut(s) 334
GluI GCNGC 9 cut(s) 11, 78, 305, 382, 420, 479, 482, 491, 909
GsuI CTGGAG 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 336
HaeIII GGCC 3 cut(s) 143, 329, 388
HapII CCGG 5 cut(s) 83, 278, 285, 385, 389
HgaI GACGC 1 cut(s) 440
HhaI GCGC 1 cut(s) 335
Hin1II CATG 6 cut(s) 119, 798, 820, 840, 955, 968
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 1 cut(s) 939
HinfI GANTC 4 cut(s) 128, 443, 503, 832
HpaII CCGG 5 cut(s) 83, 278, 285, 385, 389
HphI GGTGA 1 cut(s) 569
Hpy166II GTNNAC 4 cut(s) 220, 532, 978, 1051
Hpy188I TCNGA 3 cut(s) 133, 268, 809
Hpy188III TCNNGA 3 cut(s) 40, 116, 891
Hpy8I GTNNAC 4 cut(s) 220, 532, 978, 1051
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 2 cut(s) 394, 403
HpyCH4III ACNGT 3 cut(s) 397, 529, 579
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 9 cut(s) 34, 238, 493, 587, 752, 798, 968, 1051, 1089
HpyF3I CTNAG 2 cut(s) 773, 1034
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 6 cut(s) 119, 798, 820, 840, 955, 968
HspAI GCGC 1 cut(s) 333
KroI GCCGGC 3 cut(s) 277, 384, 388
KroNI GCCGGC 3 cut(s) 279, 386, 390
Kzo9I GATC 2 cut(s) 507, 675
LmnI GCTCC 3 cut(s) 7, 18, 1000
Lsp1109I GCAGC 7 cut(s) 22, 89, 291, 477, 490, 493, 920
MaeI CTAG 1 cut(s) 699
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 649
MalI GATC 2 cut(s) 509, 677
MboI GATC 2 cut(s) 507, 675
MfeI CAATTG 1 cut(s) 827
MhlI GDGCHC 4 cut(s) 111, 577, 993, 1053
MluCI AATT 7 cut(s) 173, 547, 729, 827, 846, 932, 1098
MlyI GAGTC 2 cut(s) 137, 497
MmeI TCCRAC 2 cut(s) 111, 141
MroNI GCCGGC 3 cut(s) 277, 384, 388
MseI TTAA 1 cut(s) 737
MslI CAYNNNNRTG 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 484
MspCI CTTAAG 1 cut(s) 736
MspI CCGG 5 cut(s) 83, 278, 285, 385, 389
MspR9I CCNGG 4 cut(s) 83, 209, 555, 852
MunI CAATTG 1 cut(s) 827
Mva1269I GAATGC 1 cut(s) 680
MvaI CCWGG 3 cut(s) 209, 555, 852
MvnI CGCG 2 cut(s) 299, 434
NaeI GCCGGC 3 cut(s) 279, 386, 390
NciI CCSGG 1 cut(s) 83
NdeII GATC 2 cut(s) 507, 675
NgoMIV GCCGGC 3 cut(s) 277, 384, 388
NlaIII CATG 6 cut(s) 119, 798, 820, 840, 955, 968
NlaIV GGNNCC 2 cut(s) 49, 87
NmuCI GTSAC 1 cut(s) 649
NspI RCATGY 1 cut(s) 798
NspV TTCGAA 2 cut(s) 177, 446
PagI TCATGA 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PctI GAATGC 1 cut(s) 680
PdiI GCCGGC 3 cut(s) 279, 386, 390
PfeI GAWTC 2 cut(s) 443, 832
PflFI GACNNNGTC 1 cut(s) 527
PfoI TCCNGGA 1 cut(s) 850
PkrI GCNGC 9 cut(s) 12, 79, 306, 383, 421, 480, 483, 492, 910
PleI GAGTC 2 cut(s) 136, 497
PpsI GAGTC 2 cut(s) 136, 497
Psp6I CCWGG 3 cut(s) 207, 553, 850
PspGI CCWGG 3 cut(s) 207, 553, 850
PspN4I GGNNCC 2 cut(s) 49, 87
PspPI GGNCC 3 cut(s) 48, 169, 241
PsrI GAACNNNNNNTAC 2 cut(s) 806, 838
PstI CTGCAG 3 cut(s) 240, 495, 1091
PstNI CAGNNNCTG 3 cut(s) 208, 484, 499
PsyI GACNNNGTC 1 cut(s) 527
PvuII CAGCTG 1 cut(s) 484
RsaI GTAC 6 cut(s) 100, 518, 778, 815, 977, 1076
RsaNI GTAC 6 cut(s) 99, 517, 777, 814, 976, 1075
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 1 cut(s) 737
SatI GCNGC 9 cut(s) 11, 78, 305, 382, 420, 479, 482, 491, 909
Sau3AI GATC 2 cut(s) 507, 675
Sau96I GGNCC 3 cut(s) 48, 169, 241
ScaI AGTACT 2 cut(s) 100, 778
SchI GAGTC 2 cut(s) 137, 497
ScrFI CCNGG 4 cut(s) 83, 209, 555, 852
SduI GDGCHC 4 cut(s) 111, 577, 993, 1053
SfcI CTRYAG 4 cut(s) 59, 236, 491, 1087
SfuI TTCGAA 2 cut(s) 177, 446
SinI GGWCC 3 cut(s) 48, 169, 241
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 2 cut(s) 736, 889
SmoI CTYRAG 2 cut(s) 736, 889
Sse9I AATT 7 cut(s) 173, 547, 729, 827, 846, 932, 1098
SsiI CCGC 8 cut(s) 56, 297, 362, 382, 419, 422, 434, 767
SspMI CTAG 1 cut(s) 699
StyD4I CCNGG 4 cut(s) 81, 207, 553, 850
TaaI ACNGT 3 cut(s) 397, 529, 579
TaiI ACGT 1 cut(s) 252
TaqI TCGA 4 cut(s) 177, 357, 446, 506
TasI AATT 7 cut(s) 173, 547, 729, 827, 846, 932, 1098
TatI WGTACW 3 cut(s) 98, 776, 813
TauI GCSGC 2 cut(s) 384, 422
TfiI GAWTC 2 cut(s) 443, 832
Tru1I TTAA 1 cut(s) 737
Tru9I TTAA 1 cut(s) 737
TscAI CASTG 2 cut(s) 582, 991
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 7 cut(s) 10, 77, 304, 478, 481, 490, 908
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 4 cut(s) 132, 332, 451, 968
TspRI CASTG 2 cut(s) 582, 991
Tth111I GACNNNGTC 1 cut(s) 527
Vha464I CTTAAG 1 cut(s) 736
VneI GTGCAC 1 cut(s) 1049
VpaK11BI GGWCC 3 cut(s) 48, 169, 241
XagI CCTNNNNNAGG 1 cut(s) 212
XapI RAATTY 1 cut(s) 932
XceI RCATGY 1 cut(s) 798
XcmI CCANNNNNNNNNTGG 1 cut(s) 561
XspI CTAG 1 cut(s) 699
ZrmI AGTACT 2 cut(s) 100, 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.