pycom08g05170

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0008302
Physical Location & Seq
Forward (+)
3978465 .. 3979205
741 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g05170.1

Sequence Viewer

Length: 741 bp
ATGCTGCAGAGGCTCAAATCCATCAACCTCTACCAGTATAGATCCCCGGAGGCACACACCGCCACTTTCGAGAAACACCCGGAAACTACTGAGGATACCCATTACGCCTTTAACCACGCCCACGAGCTTGAACAGCCCCAGTTCACCAGATCCCCTTCTCTGCTGCAGCGGCTCAAGTCCATCAATTTCCACATTCCACAAGATTTATCCAACAACCCATCTCAGCGCATCGCCGACGCAGCCCCTCCGCACAAAACCCATGAGCCGGAATCCCATTTCGAGCAAGCTCCCGAGCAGGAGGAGTTCCCAGATGACGACAGTTTGGAAGAACACGAGCACCCAGAACCAGAAACTCCAGATTTTTCAGAAGCAGGGGATAAACAGAGCGGCCTGGAGGAGATTTTCAGCCAGCTGAAGCCGTTACGGGACCGCCACGTGAACCGGACCAAGTCGGACACCAAGCCGGCGTCCGGCGAGGTGCCCGTCAAGCTCCCGCAGAAGATGAAGAAATCTGCGAGCTCCAAGTCTGCTTTTGCTCATTTCCAGGAGGATGATATCGTCGAGATTCGCCGGCCGGCGACCGTGAGGGAGAGAAAGGTGGCGAAGATGGCGGAGGATGACGAGGAGGTGGACGCCAAGGCGGATGATTTCATCAACAAGTTCAAGAAGCAGCTGAAGATGCAGCGGCTGGATTCGATCGTAAGGTACAAGGACATGATCACTAGAGGGAGTGATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

247

Amino Acids

28.48

Weight (kDa)

5.73

Isoelectric Point (pI)

62.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 207 - 242 2.1e-16 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 478
AccBSI CCGCTC 1 cut(s) 387
AciI CCGC 9 cut(s) 60, 169, 248, 387, 430, 494, 611, 641, 685
AclWI GGATC 2 cut(s) 36, 144
AcoI YGGCCR 1 cut(s) 572
AcuI CTGAAG 2 cut(s) 434, 695
AcvI CACGTG 1 cut(s) 436
AcyI GRCGYC 2 cut(s) 467, 633
AfaI GTAC 1 cut(s) 707
AfiI CCNNNNNNNGG 2 cut(s) 265, 470
AgsI TTSAA 2 cut(s) 131, 664
AjnI CCWGG 2 cut(s) 390, 543
AluBI AGCT 6 cut(s) 127, 287, 412, 490, 519, 673
AluI AGCT 6 cut(s) 127, 287, 412, 490, 519, 673
Alw21I GWGCWC 2 cut(s) 339, 521
AlwI GGATC 2 cut(s) 36, 144
AlwNI CAGNNNCTG 1 cut(s) 688
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 2 cut(s) 388, 572
ApeKI GCWGC 6 cut(s) 4, 163, 166, 239, 670, 682
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 427, 444
AsuC2I CCSGG 2 cut(s) 47, 80
AsuHPI GGTGA 1 cut(s) 136
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 2 cut(s) 427, 444
BaeGI GKGCMC 1 cut(s) 483
BanI GGYRCC 1 cut(s) 478
BanII GRGCYC 1 cut(s) 521
BauI CACGAG 2 cut(s) 122, 332
BbrPI CACGTG 1 cut(s) 436
Bbv12I GWGCWC 2 cut(s) 339, 521
BbvI GCAGC 5 cut(s) 150, 178, 251, 682, 694
BccI CCATC 4 cut(s) 29, 188, 226, 601
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 2 cut(s) 392, 545
BciVI GTATCC 1 cut(s) 88
BclI TGATCA 1 cut(s) 717
BcnI CCSGG 2 cut(s) 47, 80
BfaI CTAG 1 cut(s) 723
BfmI CTRYAG 2 cut(s) 5, 164
BfuI GTATCC 1 cut(s) 88
BisI GCNGC 9 cut(s) 5, 164, 167, 170, 240, 388, 671, 683, 686
BlsI GCNGC 9 cut(s) 6, 165, 168, 171, 241, 389, 672, 684, 687
Bme1390I CCNGG 4 cut(s) 47, 80, 392, 545
Bme18I GGWCC 2 cut(s) 427, 444
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 427, 444
BmiI GGNNCC 2 cut(s) 428, 480
BmrFI CCNGG 4 cut(s) 47, 80, 392, 545
BmrI ACTGGG 1 cut(s) 133
BmsI GCATC 2 cut(s) 237, 669
BmuI ACTGGG 1 cut(s) 133
BpmI CTGGAG 2 cut(s) 339, 413
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 2 cut(s) 47, 80
BsaAI YACGTR 1 cut(s) 436
BsaHI GRCGYC 2 cut(s) 467, 633
BsaJI CCNNGG 2 cut(s) 45, 636
BsaWI WCCGGW 1 cut(s) 441
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 470
Bse118I RCCGGY 3 cut(s) 463, 570, 574
Bse1I ACTGG 2 cut(s) 34, 139
BseBI CCWGG 2 cut(s) 392, 545
BseDI CCNNGG 2 cut(s) 45, 636
BseGI GGATG 3 cut(s) 556, 622, 649
BseLI CCNNNNNNNGG 2 cut(s) 265, 470
BseMII CTCAG 2 cut(s) 81, 236
BseNI ACTGG 2 cut(s) 34, 139
BseRI GAGGAG 3 cut(s) 314, 410, 638
BseSI GKGCMC 1 cut(s) 483
BseX3I CGGCCG 1 cut(s) 572
BseXI GCAGC 5 cut(s) 150, 178, 251, 682, 694
Bsh1285I CGRYCG 3 cut(s) 575, 582, 699
BshFI GGCC 2 cut(s) 390, 574
BshNI GGYRCC 1 cut(s) 478
BsiEI CGRYCG 3 cut(s) 575, 582, 699
BsiHKAI GWGCWC 2 cut(s) 339, 521
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 8 cut(s) 47, 80, 266, 442, 464, 471, 571, 575
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 2 cut(s) 265, 470
BsmFI GGGAC 1 cut(s) 440
BsnI GGCC 2 cut(s) 390, 574
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 3 cut(s) 339, 483, 521
Bsp143I GATC 4 cut(s) 41, 149, 696, 717
BspACI CCGC 9 cut(s) 60, 169, 248, 387, 430, 494, 611, 641, 685
BspANI GGCC 2 cut(s) 390, 574
BspCNI CTCAG 2 cut(s) 82, 235
BspLI GGNNCC 2 cut(s) 428, 480
BspMAI CTGCAG 2 cut(s) 9, 168
BspPI GGATC 2 cut(s) 36, 144
BspT107I GGYRCC 1 cut(s) 478
BsrBI CCGCTC 1 cut(s) 387
BsrFI RCCGGY 3 cut(s) 463, 570, 574
BsrI ACTGG 2 cut(s) 34, 139
BssAI RCCGGY 3 cut(s) 463, 570, 574
BssECI CCNNGG 2 cut(s) 45, 636
BssMI GATC 4 cut(s) 41, 149, 696, 717
BssNI GRCGYC 2 cut(s) 467, 633
BssSI CACGAG 2 cut(s) 122, 332
BssT1I CCWWGG 1 cut(s) 636
Bst2BI CACGAG 2 cut(s) 122, 332
Bst2UI CCWGG 2 cut(s) 392, 545
Bst4CI ACNGT 2 cut(s) 320, 583
BstACI GRCGYC 2 cut(s) 467, 633
BstBAI YACGTR 1 cut(s) 436
BstC8I GCNNGC 6 cut(s) 285, 410, 465, 517, 572, 576
BstDEI CTNAG 2 cut(s) 90, 222
BstF5I GGATG 3 cut(s) 556, 622, 649
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 4 cut(s) 44, 152, 699, 720
BstMBI GATC 4 cut(s) 41, 149, 696, 717
BstMCI CGRYCG 3 cut(s) 575, 582, 699
BstMWI GCNNNNNNNGC 8 cut(s) 10, 59, 133, 169, 239, 487, 608, 679
BstNI CCWGG 2 cut(s) 392, 545
BstSCI CCNGG 4 cut(s) 45, 78, 390, 543
BstSFI CTRYAG 2 cut(s) 5, 164
BstSLI GKGCMC 1 cut(s) 483
BstV1I GCAGC 5 cut(s) 150, 178, 251, 682, 694
BstX2I RGATCY 2 cut(s) 41, 149
BstYI RGATCY 2 cut(s) 41, 149
BstZI CGGCCG 1 cut(s) 572
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 2 cut(s) 390, 574
BtgZI GCGATG 1 cut(s) 214
BtsCI GGATG 3 cut(s) 556, 622, 649
Cac8I GCNNGC 6 cut(s) 285, 410, 465, 517, 572, 576
CaiI CAGNNNCTG 1 cut(s) 688
CfoI GCGC 1 cut(s) 228
Cfr10I RCCGGY 3 cut(s) 463, 570, 574
Cfr13I GGNCC 2 cut(s) 427, 444
CseI GACGC 3 cut(s) 245, 456, 641
Csp6I GTAC 1 cut(s) 706
CviAII CATG 2 cut(s) 260, 715
CviQI GTAC 1 cut(s) 706
DdeI CTNAG 2 cut(s) 90, 222
DpnI GATC 4 cut(s) 43, 151, 698, 719
DpnII GATC 4 cut(s) 41, 149, 696, 717
EaeI YGGCCR 1 cut(s) 572
EagI CGGCCG 1 cut(s) 572
EciI GGCGGA 2 cut(s) 626, 656
Ecl136II GAGCTC 1 cut(s) 519
EclXI CGGCCG 1 cut(s) 572
Eco130I CCWWGG 1 cut(s) 636
Eco24I GRGCYC 1 cut(s) 521
Eco32I GATATC 1 cut(s) 556
Eco47I GGWCC 2 cut(s) 427, 444
Eco52I CGGCCG 1 cut(s) 572
Eco53kI GAGCTC 1 cut(s) 519
Eco57I CTGAAG 2 cut(s) 434, 695
Eco72I CACGTG 1 cut(s) 436
Eco88I CYCGRG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 519
EcoRII CCWGG 2 cut(s) 390, 543
EcoRV GATATC 1 cut(s) 556
EcoT14I CCWWGG 1 cut(s) 636
EcoT38I GRGCYC 1 cut(s) 521
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 2 cut(s) 263, 718
FaiI YATR 3 cut(s) 39, 261, 716
FaqI GGGAC 1 cut(s) 440
FatI CATG 2 cut(s) 259, 714
FauI CCCGC 1 cut(s) 501
FbaI TGATCA 1 cut(s) 717
Fnu4HI GCNGC 9 cut(s) 5, 164, 167, 170, 240, 388, 671, 683, 686
FokI GGATG 3 cut(s) 563, 629, 656
FriOI GRGCYC 1 cut(s) 521
Fsp4HI GCNGC 9 cut(s) 5, 164, 167, 170, 240, 388, 671, 683, 686
FspBI CTAG 1 cut(s) 723
GlaI GCGC 1 cut(s) 227
GluI GCNGC 9 cut(s) 5, 164, 167, 170, 240, 388, 671, 683, 686
GsuI CTGGAG 2 cut(s) 339, 413
HaeIII GGCC 2 cut(s) 390, 574
HapII CCGG 8 cut(s) 47, 80, 266, 442, 464, 471, 571, 575
HgaI GACGC 3 cut(s) 245, 456, 641
HhaI GCGC 1 cut(s) 228
Hin1I GRCGYC 2 cut(s) 467, 633
Hin1II CATG 2 cut(s) 263, 718
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 3 cut(s) 269, 565, 692
HpaII CCGG 8 cut(s) 47, 80, 266, 442, 464, 471, 571, 575
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 3 cut(s) 144, 439, 631
Hpy188I TCNGA 2 cut(s) 367, 454
Hpy188III TCNNGA 5 cut(s) 70, 290, 356, 562, 664
Hpy8I GTNNAC 3 cut(s) 144, 439, 631
Hpy99I CGWCG 2 cut(s) 239, 563
HpyAV CCTTC 1 cut(s) 165
HpyCH4III ACNGT 2 cut(s) 320, 583
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 3 cut(s) 7, 166, 682
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 59, 133, 169, 239, 487, 608, 679
HpyF3I CTNAG 2 cut(s) 90, 222
HpySE526I ACGT 1 cut(s) 435
Hsp92I GRCGYC 2 cut(s) 467, 633
Hsp92II CATG 2 cut(s) 263, 718
HspAI GCGC 1 cut(s) 226
KroI GCCGGC 3 cut(s) 463, 570, 574
KroNI GCCGGC 3 cut(s) 465, 572, 576
Ksp22I TGATCA 1 cut(s) 717
Kzo9I GATC 4 cut(s) 41, 149, 696, 717
LmnI GCTCC 3 cut(s) 292, 495, 524
Lsp1109I GCAGC 5 cut(s) 150, 178, 251, 682, 694
LweI GCATC 2 cut(s) 237, 669
MaeI CTAG 1 cut(s) 723
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 1 cut(s) 420
MalI GATC 4 cut(s) 43, 151, 698, 719
MbiI CCGCTC 1 cut(s) 387
MboI GATC 4 cut(s) 41, 149, 696, 717
MboII GAAGA 5 cut(s) 338, 511, 517, 616, 688
MflI RGATCY 2 cut(s) 41, 149
MhlI GDGCHC 3 cut(s) 339, 483, 521
MluCI AATT 1 cut(s) 184
MmeI TCCRAC 2 cut(s) 234, 432
MroNI GCCGGC 3 cut(s) 463, 570, 574
MseI TTAA 1 cut(s) 111
MspA1I CMGCKG 4 cut(s) 169, 412, 673, 685
MspI CCGG 8 cut(s) 47, 80, 266, 442, 464, 471, 571, 575
MspR9I CCNGG 4 cut(s) 47, 80, 392, 545
MvaI CCWGG 2 cut(s) 392, 545
MwoI GCNNNNNNNGC 8 cut(s) 10, 59, 133, 169, 239, 487, 608, 679
NaeI GCCGGC 3 cut(s) 465, 572, 576
NciI CCSGG 2 cut(s) 47, 80
NdeII GATC 4 cut(s) 41, 149, 696, 717
NgoMIV GCCGGC 3 cut(s) 463, 570, 574
NlaIII CATG 2 cut(s) 263, 718
NlaIV GGNNCC 2 cut(s) 428, 480
PdiI GCCGGC 3 cut(s) 465, 572, 576
PfeI GAWTC 3 cut(s) 269, 565, 692
PflFI GACNNNGTC 1 cut(s) 448
PfoI TCCNGGA 1 cut(s) 543
PkrI GCNGC 9 cut(s) 6, 165, 168, 171, 241, 389, 672, 684, 687
Ple19I CGATCG 1 cut(s) 699
PmaCI CACGTG 1 cut(s) 436
PmlI CACGTG 1 cut(s) 436
Ppu21I YACGTR 1 cut(s) 436
Psp124BI GAGCTC 1 cut(s) 521
Psp6I CCWGG 2 cut(s) 390, 543
PspCI CACGTG 1 cut(s) 436
PspGI CCWGG 2 cut(s) 390, 543
PspN4I GGNNCC 2 cut(s) 428, 480
PspPI GGNCC 2 cut(s) 427, 444
PstI CTGCAG 2 cut(s) 9, 168
PstNI CAGNNNCTG 1 cut(s) 688
PsuI RGATCY 2 cut(s) 41, 149
PsyI GACNNNGTC 1 cut(s) 448
PvuI CGATCG 1 cut(s) 699
PvuII CAGCTG 2 cut(s) 412, 673
RsaI GTAC 1 cut(s) 707
RsaNI GTAC 1 cut(s) 706
SacI GAGCTC 1 cut(s) 521
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 9 cut(s) 5, 164, 167, 170, 240, 388, 671, 683, 686
Sau3AI GATC 4 cut(s) 41, 149, 696, 717
Sau96I GGNCC 2 cut(s) 427, 444
ScrFI CCNGG 4 cut(s) 47, 80, 392, 545
SduI GDGCHC 3 cut(s) 339, 483, 521
SfaNI GCATC 2 cut(s) 237, 669
SfcI CTRYAG 2 cut(s) 5, 164
SinI GGWCC 2 cut(s) 427, 444
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 1 cut(s) 184
SsiI CCGC 9 cut(s) 60, 169, 248, 387, 430, 494, 611, 641, 685
SspMI CTAG 1 cut(s) 723
SstI GAGCTC 1 cut(s) 521
StyD4I CCNGG 4 cut(s) 45, 78, 390, 543
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 2 cut(s) 320, 583
TaiI ACGT 1 cut(s) 438
TaqI TCGA 4 cut(s) 69, 279, 561, 695
TasI AATT 1 cut(s) 184
TauI GCSGC 3 cut(s) 172, 390, 688
TfiI GAWTC 3 cut(s) 269, 565, 692
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TseI GCWGC 6 cut(s) 4, 163, 166, 239, 670, 682
TspDTI ATGAA 2 cut(s) 518, 640
Tth111I GACNNNGTC 1 cut(s) 448
VpaK11BI GGWCC 2 cut(s) 427, 444
XspI CTAG 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.