RchiOBHm_Chr6g0310991

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008302
Physical Location & Seq
Forward (+)
68129788 .. 68131526
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27966

Sequence Viewer

Length: 900 bp
ATGTTTGAGGAATCTGTATCCTCCCTGCCCTCAATTTGGGCCTCCATGAACAGCTGGTTAACCCCAACTGTTCTCTTCCTCCTCCTCCAGCTCATGATTGGCACCATCTTCATTGCTTCCAGCTTAGGCACCCAGAAGCACCACGACCAAGACCACCACCAACACCAACACCAACAAGGCTTGGCGAGATCTCCCTCTGTTTTGCAGCGGTTCAAATCCATCAACTTCTACGCCTACAGATCTCCGGAACCGGCCACGAATTATGAAAAACCACCCGAATCCGAGACCCATTTCGCTTTCCCGCACGCCCAGGAGGTCGAACAGCCCAAACTCCCCAGATCTCCTTCCATGCTGGAGCAGCTCCAATCCAAGTTCCAGTTGCACTTCCCGAAAGGGTCCAGCCCGCTACAGCCCCGAGATTTCGCAGCCCCGGAACCCCATTTCAGTACTTACGAGCACTCTCATGAAGACGAAGAGTCGGAAGAGGAGGCCAAAGAGGCTGAAGAGTTGGATGAGGACCAATTCGAAGCCAAAGAAGAAGAAGAAGAACAGACCCTGGACGAGGTTTACAGCCAGCTACATCTGCAGGACCACCACGTCAGCAGGACGAAATCGGACACCAAGCCGGCTTCCGGCGACTTACCCGCGAAGCTGCCGAAGAAGATGAAGAAGTCGGCCAGCGCCAAGTCGGCATTTGCTCATTTCGAGGCGGACGACATCGTGGAGAGCCGCCGGCCGGCGACCGTGAAGGAGAAGAAGGCAAAGGCGGCGGAGGACGACGCGGAGGTGGATTCGAAAGCCGATGACTTCATCAACAGGTTCAAGCAGCAGCTGAAGCTGCAGAGGCTGGACTCGATCATTAGGTACAAGGACACGGTCAACAGAGGAAGCGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

299

Amino Acids

34.26

Weight (kDa)

5.46

Isoelectric Point (pI)

61.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4408 PF14364 10 - 42 1.3e-11 Domain of unknown function (DUF4408)
DUF761 PF05553 261 - 295 2.6e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 596
AccB1I GGYRCC 2 cut(s) 101, 128
AccII CGCG 2 cut(s) 647, 782
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 9 cut(s) 208, 302, 404, 645, 710, 730, 767, 770, 782
AcoI YGGCCR 3 cut(s) 252, 675, 734
AcuI CTGAAG 2 cut(s) 522, 854
AfaI GTAC 2 cut(s) 448, 866
AfiI CCNNNNNNNGG 4 cut(s) 36, 562, 632, 736
AgsI TTSAA 2 cut(s) 214, 823
AhdI GACNNNNNGTC 1 cut(s) 475
AjiI CACGTC 1 cut(s) 598
AjnI CCWGG 2 cut(s) 309, 555
AluBI AGCT 8 cut(s) 54, 91, 123, 361, 577, 652, 832, 838
AluI AGCT 8 cut(s) 54, 91, 123, 361, 577, 652, 832, 838
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 1 cut(s) 278
AlwNI CAGNNNCTG 3 cut(s) 556, 832, 847
Ama87I CYCGRG 1 cut(s) 414
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 5 cut(s) 39, 252, 489, 675, 734
ApeKI GCWGC 7 cut(s) 205, 358, 425, 652, 826, 829, 838
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 4 cut(s) 39, 396, 517, 589
AsuC2I CCSGG 1 cut(s) 431
AsuII TTCGAA 2 cut(s) 525, 794
AvaI CYCGRG 1 cut(s) 414
AvaII GGWCC 3 cut(s) 396, 517, 589
BanI GGYRCC 2 cut(s) 101, 128
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 7 cut(s) 217, 370, 437, 639, 825, 838, 841
BccI CCATC 2 cut(s) 113, 227
BciT130I CCWGG 2 cut(s) 311, 557
BciVI GTATCC 1 cut(s) 28
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 1 cut(s) 278
BfmI CTRYAG 4 cut(s) 235, 407, 584, 839
BfoI RGCGCY 1 cut(s) 684
BfuI GTATCC 1 cut(s) 28
BglI GCCNNNNNGGC 2 cut(s) 497, 689
BglII AGATCT 3 cut(s) 188, 239, 338
BisI GCNGC 9 cut(s) 206, 359, 426, 653, 730, 768, 827, 830, 839
BlsI GCNGC 9 cut(s) 207, 360, 427, 654, 731, 769, 828, 831, 840
BmcAI AGTACT 1 cut(s) 448
Bme1390I CCNGG 3 cut(s) 311, 431, 557
Bme18I GGWCC 3 cut(s) 396, 517, 589
BmeRI GACNNNNNGTC 1 cut(s) 475
BmeT110I CYCGRG 1 cut(s) 414
BmgBI CACGTC 1 cut(s) 598
BmgT120I GGNCC 4 cut(s) 39, 396, 517, 589
BmiI GGNNCC 5 cut(s) 103, 130, 249, 397, 435
BmrFI CCNGG 3 cut(s) 311, 431, 557
BpiI GAAGAC 1 cut(s) 474
BpmI CTGGAG 2 cut(s) 71, 374
Bpu10I CCTNAGC 1 cut(s) 124
Bpu14I TTCGAA 2 cut(s) 525, 794
BpuMI CCSGG 1 cut(s) 431
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 3 cut(s) 309, 429, 555
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 562, 632, 736
Bse118I RCCGGY 4 cut(s) 250, 625, 732, 736
Bse1I ACTGG 1 cut(s) 376
Bse3DI GCAATG 1 cut(s) 111
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 2 cut(s) 311, 557
BseDI CCNNGG 3 cut(s) 309, 429, 555
BseGI GGATG 1 cut(s) 517
BseLI CCNNNNNNNGG 4 cut(s) 36, 562, 632, 736
BseMI GCAATG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 3 cut(s) 71, 74, 500
BseX3I CGGCCG 1 cut(s) 734
BseXI GCAGC 7 cut(s) 217, 370, 437, 639, 825, 838, 841
Bsh1236I CGCG 2 cut(s) 647, 782
Bsh1285I CGRYCG 2 cut(s) 737, 744
BshFI GGCC 5 cut(s) 41, 254, 491, 677, 736
BshNI GGYRCC 2 cut(s) 101, 128
BsiEI CGRYCG 2 cut(s) 737, 744
BsiHKAI GWGCWC 1 cut(s) 459
BsiHKCI CYCGRG 1 cut(s) 414
BsiSI CCGG 7 cut(s) 245, 251, 431, 626, 633, 733, 737
BslI CCNNNNNNNGG 4 cut(s) 36, 562, 632, 736
BsmAI GTCTC 1 cut(s) 278
BsnI GGCC 5 cut(s) 41, 254, 491, 677, 736
Bso31I GGTCTC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 414
Bsp119I TTCGAA 2 cut(s) 525, 794
Bsp1286I GDGCHC 1 cut(s) 459
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 4 cut(s) 188, 239, 338, 855
BspACI CCGC 9 cut(s) 208, 302, 404, 645, 710, 730, 767, 770, 782
BspANI GGCC 5 cut(s) 41, 254, 491, 677, 736
BspEI TCCGGA 1 cut(s) 244
BspFNI CGCG 2 cut(s) 647, 782
BspHI TCATGA 2 cut(s) 93, 463
BspLI GGNNCC 5 cut(s) 103, 130, 249, 397, 435
BspMAI CTGCAG 2 cut(s) 588, 843
BspT104I TTCGAA 2 cut(s) 525, 794
BspT107I GGYRCC 2 cut(s) 101, 128
BspTNI GGTCTC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 4 cut(s) 250, 625, 732, 736
BsrI ACTGG 1 cut(s) 376
BssAI RCCGGY 4 cut(s) 250, 625, 732, 736
BssECI CCNNGG 3 cut(s) 309, 429, 555
BssMI GATC 4 cut(s) 188, 239, 338, 855
Bst2UI CCWGG 2 cut(s) 311, 557
Bst4CI ACNGT 3 cut(s) 70, 745, 877
Bst6I CTCTTC 4 cut(s) 80, 468, 477, 498
BstBI TTCGAA 2 cut(s) 525, 794
BstC8I GCNNGC 7 cut(s) 306, 404, 575, 627, 679, 734, 738
BstDEI CTNAG 1 cut(s) 124
BstENI CCTNNNNNAGG 1 cut(s) 560
BstF5I GGATG 1 cut(s) 517
BstFNI CGCG 2 cut(s) 647, 782
BstH2I RGCGCY 1 cut(s) 684
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 4 cut(s) 191, 242, 341, 858
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 4 cut(s) 188, 239, 338, 855
BstMCI CGRYCG 2 cut(s) 737, 744
BstMWI GCNNNNNNNGC 8 cut(s) 358, 497, 583, 689, 767, 835, 838, 844
BstNI CCWGG 2 cut(s) 311, 557
BstSCI CCNGG 3 cut(s) 309, 429, 555
BstSFI CTRYAG 4 cut(s) 235, 407, 584, 839
BstUI CGCG 2 cut(s) 647, 782
BstV1I GCAGC 7 cut(s) 217, 370, 437, 639, 825, 838, 841
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 3 cut(s) 188, 239, 338
BstYI RGATCY 3 cut(s) 188, 239, 338
BstZI CGGCCG 1 cut(s) 734
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 5 cut(s) 41, 254, 491, 677, 736
BtrI CACGTC 1 cut(s) 598
BtsCI GGATG 1 cut(s) 517
Cac8I GCNNGC 7 cut(s) 306, 404, 575, 627, 679, 734, 738
CaiI CAGNNNCTG 3 cut(s) 556, 832, 847
CciI TCATGA 2 cut(s) 93, 463
CfoI GCGC 1 cut(s) 683
Cfr10I RCCGGY 4 cut(s) 250, 625, 732, 736
Cfr13I GGNCC 4 cut(s) 39, 396, 517, 589
CseI GACGC 1 cut(s) 788
Csp6I GTAC 2 cut(s) 447, 865
CviAII CATG 4 cut(s) 46, 94, 349, 464
CviQI GTAC 2 cut(s) 447, 865
DdeI CTNAG 1 cut(s) 124
DpnI GATC 4 cut(s) 190, 241, 340, 857
DpnII GATC 4 cut(s) 188, 239, 338, 855
DrdI GACNNNNNNGTC 1 cut(s) 596
DriI GACNNNNNGTC 1 cut(s) 475
DseDI GACNNNNNNGTC 1 cut(s) 596
EaeI YGGCCR 3 cut(s) 252, 675, 734
EagI CGGCCG 1 cut(s) 734
Eam1104I CTCTTC 4 cut(s) 80, 468, 477, 498
Eam1105I GACNNNNNGTC 1 cut(s) 475
EarI CTCTTC 4 cut(s) 80, 468, 477, 498
EciI GGCGGA 2 cut(s) 725, 785
EclXI CGGCCG 1 cut(s) 734
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 3 cut(s) 396, 517, 589
Eco52I CGGCCG 1 cut(s) 734
Eco57I CTGAAG 2 cut(s) 522, 854
Eco88I CYCGRG 1 cut(s) 414
EcoNI CCTNNNNNAGG 1 cut(s) 560
EcoRII CCWGG 2 cut(s) 309, 555
FaeI CATG 4 cut(s) 49, 97, 352, 467
FaiI YATR 5 cut(s) 47, 95, 264, 350, 465
FatI CATG 4 cut(s) 45, 93, 348, 463
FauI CCCGC 3 cut(s) 309, 411, 652
Fnu4HI GCNGC 9 cut(s) 206, 359, 426, 653, 730, 768, 827, 830, 839
FokI GGATG 1 cut(s) 524
Fsp4HI GCNGC 9 cut(s) 206, 359, 426, 653, 730, 768, 827, 830, 839
GlaI GCGC 1 cut(s) 682
GluI GCNGC 9 cut(s) 206, 359, 426, 653, 730, 768, 827, 830, 839
GsuI CTGGAG 2 cut(s) 71, 374
HaeII RGCGCY 1 cut(s) 684
HaeIII GGCC 5 cut(s) 41, 254, 491, 677, 736
HapII CCGG 7 cut(s) 245, 251, 431, 626, 633, 733, 737
HgaI GACGC 1 cut(s) 788
HhaI GCGC 1 cut(s) 683
Hin1II CATG 4 cut(s) 49, 97, 352, 467
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HincII GTYRAC 2 cut(s) 60, 880
HindII GTYRAC 2 cut(s) 60, 880
HinfI GANTC 5 cut(s) 11, 278, 476, 791, 851
HpaI GTTAAC 1 cut(s) 60
HpaII CCGG 7 cut(s) 245, 251, 431, 626, 633, 733, 737
Hpy166II GTNNAC 3 cut(s) 60, 568, 880
Hpy188I TCNGA 3 cut(s) 283, 481, 616
Hpy188III TCNNGA 4 cut(s) 94, 245, 388, 464
Hpy8I GTNNAC 3 cut(s) 60, 568, 880
Hpy99I CGWCG 1 cut(s) 782
HpyAV CCTTC 3 cut(s) 354, 742, 751
HpyCH4III ACNGT 3 cut(s) 70, 745, 877
HpyCH4IV ACGT 1 cut(s) 597
HpyCH4V TGCA 4 cut(s) 205, 382, 586, 841
HpyF10VI GCNNNNNNNGC 8 cut(s) 358, 497, 583, 689, 767, 835, 838, 844
HpyF3I CTNAG 1 cut(s) 124
HpySE526I ACGT 1 cut(s) 597
Hsp92II CATG 4 cut(s) 49, 97, 352, 467
HspAI GCGC 1 cut(s) 681
Kpn2I TCCGGA 1 cut(s) 244
KroI GCCGGC 3 cut(s) 625, 732, 736
KroNI GCCGGC 3 cut(s) 627, 734, 738
KspAI GTTAAC 1 cut(s) 60
Kzo9I GATC 4 cut(s) 188, 239, 338, 855
LmnI GCTCC 2 cut(s) 355, 366
Lsp1109I GCAGC 7 cut(s) 217, 370, 437, 639, 825, 838, 841
MaeII ACGT 1 cut(s) 597
MalI GATC 4 cut(s) 190, 241, 340, 857
MboI GATC 4 cut(s) 188, 239, 338, 855
MflI RGATCY 3 cut(s) 188, 239, 338
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 3 cut(s) 33, 259, 521
MlyI GAGTC 2 cut(s) 485, 845
MmeI TCCRAC 2 cut(s) 459, 489
MroI TCCGGA 1 cut(s) 244
MroNI GCCGGC 3 cut(s) 625, 732, 736
MseI TTAA 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 462
MspA1I CMGCKG 3 cut(s) 54, 208, 832
MspI CCGG 7 cut(s) 245, 251, 431, 626, 633, 733, 737
MspR9I CCNGG 3 cut(s) 311, 431, 557
MvaI CCWGG 2 cut(s) 311, 557
MvnI CGCG 2 cut(s) 647, 782
MwoI GCNNNNNNNGC 8 cut(s) 358, 497, 583, 689, 767, 835, 838, 844
NaeI GCCGGC 3 cut(s) 627, 734, 738
NciI CCSGG 1 cut(s) 431
NdeII GATC 4 cut(s) 188, 239, 338, 855
NgoMIV GCCGGC 3 cut(s) 625, 732, 736
NlaIII CATG 4 cut(s) 49, 97, 352, 467
NlaIV GGNNCC 5 cut(s) 103, 130, 249, 397, 435
NspV TTCGAA 2 cut(s) 525, 794
PagI TCATGA 2 cut(s) 93, 463
PcsI WCGNNNNNNNCGW 1 cut(s) 711
PdiI GCCGGC 3 cut(s) 627, 734, 738
PfeI GAWTC 3 cut(s) 11, 278, 791
PflFI GACNNNGTC 1 cut(s) 875
PkrI GCNGC 9 cut(s) 207, 360, 427, 654, 731, 769, 828, 831, 840
PleI GAGTC 2 cut(s) 484, 845
PpsI GAGTC 2 cut(s) 484, 845
Psp6I CCWGG 2 cut(s) 309, 555
PspGI CCWGG 2 cut(s) 309, 555
PspN4I GGNNCC 5 cut(s) 103, 130, 249, 397, 435
PspPI GGNCC 4 cut(s) 39, 396, 517, 589
PstI CTGCAG 2 cut(s) 588, 843
PstNI CAGNNNCTG 3 cut(s) 556, 832, 847
PsuI RGATCY 3 cut(s) 188, 239, 338
PsyI GACNNNGTC 1 cut(s) 875
PvuII CAGCTG 2 cut(s) 54, 832
RsaI GTAC 2 cut(s) 448, 866
RsaNI GTAC 2 cut(s) 447, 865
RseI CAYNNNNRTG 1 cut(s) 462
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 9 cut(s) 206, 359, 426, 653, 730, 768, 827, 830, 839
Sau3AI GATC 4 cut(s) 188, 239, 338, 855
Sau96I GGNCC 4 cut(s) 39, 396, 517, 589
ScaI AGTACT 1 cut(s) 448
SchI GAGTC 2 cut(s) 485, 845
ScrFI CCNGG 3 cut(s) 311, 431, 557
SduI GDGCHC 1 cut(s) 459
SfcI CTRYAG 4 cut(s) 235, 407, 584, 839
SfuI TTCGAA 2 cut(s) 525, 794
SinI GGWCC 3 cut(s) 396, 517, 589
SmiMI CAYNNNNRTG 1 cut(s) 462
Sse9I AATT 3 cut(s) 33, 259, 521
SsiI CCGC 9 cut(s) 208, 302, 404, 645, 710, 730, 767, 770, 782
StyD4I CCNGG 3 cut(s) 309, 429, 555
TaaI ACNGT 3 cut(s) 70, 745, 877
TaiI ACGT 1 cut(s) 600
TaqI TCGA 5 cut(s) 318, 525, 705, 794, 854
TasI AATT 3 cut(s) 33, 259, 521
TatI WGTACW 1 cut(s) 446
TauI GCSGC 2 cut(s) 732, 770
TfiI GAWTC 3 cut(s) 11, 278, 791
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TseI GCWGC 7 cut(s) 205, 358, 425, 652, 826, 829, 838
TspDTI ATGAA 6 cut(s) 62, 100, 279, 480, 680, 799
Tth111I GACNNNGTC 1 cut(s) 875
VpaK11BI GGWCC 3 cut(s) 396, 517, 589
XagI CCTNNNNNAGG 1 cut(s) 560
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
ZrmI AGTACT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.