Rmu_co8387599.1_g000001

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8387599.1
OG0008302
Physical Location & Seq
Forward (+)
1 .. 387
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8387599.1_g000001.1.cds

Sequence Viewer

Length: 387 bp
gaagaagaagaagaagaagaaggtgaagagaaagaacagaccctggaggaggtttacagccagctacatctgcaggaccaccacgtcagccggacgaaatcggacaccaggccggcttccggcgacttacccgcgaagctgccgaagaagatgaagaagtcggccagcaccaagtcggcatttgctcatttcgaggcggacgacatcgtggagagccgccggccggcgaccgtgaaggagaagaagacaaaggcggcggaggacgacgcggaggtggattcgaaagccgatgacttcatcaacaggttcaagcagcagctgaagctgcagaggctggactcgatcgttcggtacaaggacatggtcaacagaggaagcgacaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

128

Amino Acids

14.71

Weight (kDa)

5.47

Isoelectric Point (pI)

56.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AccII CGCG 2 cut(s) 134, 269
AciI CCGC 6 cut(s) 132, 197, 217, 254, 257, 269
AcoI YGGCCR 2 cut(s) 162, 221
AcuI CTGAAG 1 cut(s) 341
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 3 cut(s) 49, 119, 223
AgsI TTSAA 1 cut(s) 310
AjiI CACGTC 1 cut(s) 85
AjnI CCWGG 2 cut(s) 42, 107
AluBI AGCT 4 cut(s) 64, 139, 319, 325
AluI AGCT 4 cut(s) 64, 139, 319, 325
AlwNI CAGNNNCTG 3 cut(s) 43, 319, 334
AoxI GGCC 3 cut(s) 110, 162, 221
ApeKI GCWGC 4 cut(s) 139, 313, 316, 325
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 35
AsuII TTCGAA 1 cut(s) 281
AvaII GGWCC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 4 cut(s) 126, 312, 325, 328
BciT130I CCWGG 2 cut(s) 44, 109
BfmI CTRYAG 2 cut(s) 71, 326
BisI GCNGC 6 cut(s) 140, 217, 255, 314, 317, 326
BlsI GCNGC 6 cut(s) 141, 218, 256, 315, 318, 327
Bme1390I CCNGG 2 cut(s) 44, 109
Bme18I GGWCC 1 cut(s) 76
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 76
BmrFI CCNGG 2 cut(s) 44, 109
BpiI GAAGAC 1 cut(s) 251
BpmI CTGGAG 1 cut(s) 65
Bpu14I TTCGAA 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 42
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 119, 223
Bse118I RCCGGY 3 cut(s) 112, 219, 223
BseBI CCWGG 2 cut(s) 44, 109
BseDI CCNNGG 1 cut(s) 42
BseLI CCNNNNNNNGG 3 cut(s) 49, 119, 223
BseRI GAGGAG 1 cut(s) 62
BseX3I CGGCCG 1 cut(s) 221
BseXI GCAGC 4 cut(s) 126, 312, 325, 328
Bsh1236I CGCG 2 cut(s) 134, 269
Bsh1285I CGRYCG 3 cut(s) 224, 231, 345
BshFI GGCC 3 cut(s) 112, 164, 223
BsiEI CGRYCG 3 cut(s) 224, 231, 345
BsiSI CCGG 5 cut(s) 91, 113, 120, 220, 224
BslI CCNNNNNNNGG 3 cut(s) 49, 119, 223
BsnI GGCC 3 cut(s) 112, 164, 223
Bsp119I TTCGAA 1 cut(s) 281
Bsp143I GATC 1 cut(s) 342
BspACI CCGC 6 cut(s) 132, 197, 217, 254, 257, 269
BspANI GGCC 3 cut(s) 112, 164, 223
BspFNI CGCG 2 cut(s) 134, 269
BspMAI CTGCAG 2 cut(s) 75, 330
BspT104I TTCGAA 1 cut(s) 281
BsrFI RCCGGY 3 cut(s) 112, 219, 223
BssAI RCCGGY 3 cut(s) 112, 219, 223
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 1 cut(s) 342
Bst2UI CCWGG 2 cut(s) 44, 109
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 21
BstBI TTCGAA 1 cut(s) 281
BstC8I GCNNGC 5 cut(s) 62, 114, 166, 221, 225
BstENI CCTNNNNNAGG 1 cut(s) 47
BstFNI CGCG 2 cut(s) 134, 269
BstKTI GATC 1 cut(s) 345
BstMBI GATC 1 cut(s) 342
BstMCI CGRYCG 3 cut(s) 224, 231, 345
BstMWI GCNNNNNNNGC 4 cut(s) 70, 322, 325, 331
BstNI CCWGG 2 cut(s) 44, 109
BstSCI CCNGG 2 cut(s) 42, 107
BstSFI CTRYAG 2 cut(s) 71, 326
BstUI CGCG 2 cut(s) 134, 269
BstV1I GCAGC 4 cut(s) 126, 312, 325, 328
BstV2I GAAGAC 1 cut(s) 251
BstZI CGGCCG 1 cut(s) 221
BsuRI GGCC 3 cut(s) 112, 164, 223
BtrI CACGTC 1 cut(s) 85
Cac8I GCNNGC 5 cut(s) 62, 114, 166, 221, 225
CaiI CAGNNNCTG 3 cut(s) 43, 319, 334
Cfr10I RCCGGY 3 cut(s) 112, 219, 223
Cfr13I GGNCC 1 cut(s) 76
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 352
CviAII CATG 1 cut(s) 361
CviQI GTAC 1 cut(s) 352
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
EaeI YGGCCR 2 cut(s) 162, 221
EagI CGGCCG 1 cut(s) 221
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
EciI GGCGGA 2 cut(s) 212, 272
EclXI CGGCCG 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 76
Eco52I CGGCCG 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 341
EcoNI CCTNNNNNAGG 1 cut(s) 47
EcoRII CCWGG 2 cut(s) 42, 107
FaeI CATG 1 cut(s) 364
FaiI YATR 1 cut(s) 362
FatI CATG 1 cut(s) 360
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 6 cut(s) 140, 217, 255, 314, 317, 326
Fsp4HI GCNGC 6 cut(s) 140, 217, 255, 314, 317, 326
GluI GCNGC 6 cut(s) 140, 217, 255, 314, 317, 326
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 3 cut(s) 112, 164, 223
HapII CCGG 5 cut(s) 91, 113, 120, 220, 224
HgaI GACGC 1 cut(s) 275
Hin1II CATG 1 cut(s) 364
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 2 cut(s) 278, 338
HpaII CCGG 5 cut(s) 91, 113, 120, 220, 224
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 2 cut(s) 55, 367
Hpy188I TCNGA 1 cut(s) 103
Hpy8I GTNNAC 2 cut(s) 55, 367
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 2 cut(s) 14, 229
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 73, 328
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 322, 325, 331
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 1 cut(s) 364
KroI GCCGGC 3 cut(s) 112, 219, 223
KroNI GCCGGC 3 cut(s) 114, 221, 225
Kzo9I GATC 1 cut(s) 342
Lsp1109I GCAGC 4 cut(s) 126, 312, 325, 328
MaeII ACGT 1 cut(s) 84
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 7 cut(s) 40, 43, 187, 253, 265, 324, 365
MroNI GCCGGC 3 cut(s) 112, 219, 223
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 5 cut(s) 91, 113, 120, 220, 224
MspR9I CCNGG 2 cut(s) 44, 109
MvaI CCWGG 2 cut(s) 44, 109
MvnI CGCG 2 cut(s) 134, 269
MwoI GCNNNNNNNGC 4 cut(s) 70, 322, 325, 331
NaeI GCCGGC 3 cut(s) 114, 221, 225
NdeII GATC 1 cut(s) 342
NgoMIV GCCGGC 3 cut(s) 112, 219, 223
NlaIII CATG 1 cut(s) 364
NspV TTCGAA 1 cut(s) 281
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PdiI GCCGGC 3 cut(s) 114, 221, 225
PfeI GAWTC 1 cut(s) 278
PflFI GACNNNGTC 1 cut(s) 362
PkrI GCNGC 6 cut(s) 141, 218, 256, 315, 318, 327
Ple19I CGATCG 1 cut(s) 345
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Psp6I CCWGG 2 cut(s) 42, 107
PspGI CCWGG 2 cut(s) 42, 107
PspPI GGNCC 1 cut(s) 76
PstI CTGCAG 2 cut(s) 75, 330
PstNI CAGNNNCTG 3 cut(s) 43, 319, 334
PsyI GACNNNGTC 1 cut(s) 362
PvuI CGATCG 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 319
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SatI GCNGC 6 cut(s) 140, 217, 255, 314, 317, 326
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 2 cut(s) 44, 109
SetI ASST 9 cut(s) 25, 54, 66, 87, 141, 276, 308, 321, 327
SfcI CTRYAG 2 cut(s) 71, 326
SfuI TTCGAA 1 cut(s) 281
SinI GGWCC 1 cut(s) 76
SsiI CCGC 6 cut(s) 132, 197, 217, 254, 257, 269
StyD4I CCNGG 2 cut(s) 42, 107
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 192, 281, 341
TauI GCSGC 2 cut(s) 219, 257
TfiI GAWTC 1 cut(s) 278
TseI GCWGC 4 cut(s) 139, 313, 316, 325
TspDTI ATGAA 2 cut(s) 167, 286
Tth111I GACNNNGTC 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 76
XagI CCTNNNNNAGG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.