Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008302

Physical Location & Seq

Genomic Coordinates Reverse (-)

3945578 .. 3946704

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1059100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTTTGAAGAATCTGTTACATCCCTGCCTTCTATTTGGGCTTCCATAAACAGCTGGTTCACTCCAACTGTCCTCTTCCTCCTCCTCAATGTCATGATTGGCACCATCGCCATTGCTTCAAACTTGGGCTCCACCCAGAAACAGCAGGACCCGCAGCAGCACCAGAACAACCACCAAGGCGGAGGCCTCGCCAGATCTCCATCTATGCTGCAGAGGCTCAAATCCATCAACCTCTACCAGTACAGATCCCCGGAGCCACACGCCGGCACTTTCGAGCAACACCCAGAAACTACTGAGGCTACCCATTACGCTTTTAAGCACACCCACGAGCTCGAACAGCCCCCATTGACCAGATCCCCTTCTCTGCTGCAGCGGCTCAAGTCCATCAATTTCTACCCATCTCAGCCCCCCGCCGCCGCTGCCCCTCCGCACAAAACCCATGAGCCGGAATCCAACTTCGAGCAAGCTCCGGAGCACGACGAGTTCCCAGATGACGACCTTTTTGAAGAACACGAACACCCAGAACCAGAAACTCCAGATTTTTCAGAAGCAGGTGATACACAGAGCAGTCTGGAGGAGGTTTTCAGTCAGCTGAAGCCGTTGCAGGACCACCATGTGAGCCGGACCAAGTCGGACACCAAGCCGGCGTCCGGCGAGGTGCCCGCCAAGCTCCCGAAGAAGATGAAGAAGTCTGCGAGCTCCAAGTCTGCTTTCGCTCACTTTCAAGAGGATGATGTCGCCGAGATTCGCCGGCCGGCGACGATGAGGGAGAGGAAGGTGGCGAAGGCGGCGGAGGACGACGATGAGGTGGATGCGAAGGCGGATGATTTCATCAACAAGTTCAAGAACCAACTGAAGTTGCAGCGGTTGGATTCGATCATAAGGTACAAGGGCATGATTACTAGAGGGAGCGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408 DUF761

Protein Analysis

307

Amino Acids

34.57

Weight (kDa)

5.76

Isoelectric Point (pI)

56.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4408	PF14364	10 - 40	7.4e-13	Domain of unknown function (DUF4408)
DUF761	PF05553	267 - 302	8.1e-17	Cotton fibre expressed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26110
fragaria_vesca	FvH4_2g31830
malus_domestica	MD08G1062500.v1.1 MD15G1059100.v1.1
prunus_persica	Prupe.1G411600_v2.0.a1
pyrus_communis	pycom08g05150 pycom08g05170 pycom15g05550
rosa_chinensis	RchiOBHm_Chr6g0310991
rosa_laevigata	RLG00000010444
rosa_multiflora	Rmu_co8298593.1_g000001 Rmu_co8387599.1_g000001 Rmu_sc0005220.1_g000004
rosa_roxburghii	Rroxscaffold_7G00158120
rosa_rugosa	Rorug06G0384700
rosa_samantha	Rh5BG107200 Rh6AG498500 Rh6BG508900 Rh6CG514800 Rh6DG501400
rosa_wichuraiana	Rw0G006860 Rw1G019270 Rw6G043400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	542
Acc36I	ACCTGC	1 cut(s)	542
AccB1I	GGYRCC	2 cut(s)	101, 658
AccIII	TCCGGA	1 cut(s)	469
AclWI	GGATC	2 cut(s)	240, 348
AcoI	YGGCCR	1 cut(s)	752
AcuI	CTGAAG	2 cut(s)	614, 875
AcyI	GRCGYC	1 cut(s)	647
AdeI	CACNNNGTG	1 cut(s)	616
AfaI	GTAC	2 cut(s)	242, 887
AfiI	CCNNNNNNNGG	3 cut(s)	263, 445, 650
AgsI	TTSAA	5 cut(s)	8, 120, 506, 725, 844
AjuI	GAANNNNNNNTTGG	2 cut(s)	695, 727
AluBI	AGCT	6 cut(s)	54, 331, 467, 592, 670, 699
AluI	AGCT	6 cut(s)	54, 331, 467, 592, 670, 699
Alw21I	GWGCWC	3 cut(s)	333, 477, 701
AlwI	GGATC	2 cut(s)	240, 348
Aor13HI	TCCGGA	1 cut(s)	469
AoxI	GGCC	2 cut(s)	184, 752
ApeKI	GCWGC	7 cut(s)	154, 157, 208, 367, 370, 419, 862
ArsI	GACNNNNNNTTYG	2 cut(s)	485, 517
AspS9I	GGNCC	3 cut(s)	148, 607, 624
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	566
AvaII	GGWCC	3 cut(s)	148, 607, 624
BaeGI	GKGCMC	1 cut(s)	663
BanI	GGYRCC	2 cut(s)	101, 658
BanII	GRGCYC	3 cut(s)	131, 333, 701
BauI	CACGAG	1 cut(s)	326
Bbv12I	GWGCWC	3 cut(s)	333, 477, 701
BbvI	GCAGC	7 cut(s)	166, 169, 195, 354, 382, 406, 874
BccI	CCATC	5 cut(s)	113, 208, 233, 392, 406
BceAI	ACGGC	1 cut(s)	583
BcnI	CCSGG	1 cut(s)	251
BfaI	CTAG	1 cut(s)	903
BfmI	CTRYAG	2 cut(s)	209, 368
BfuAI	ACCTGC	1 cut(s)	542
BglII	AGATCT	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	3 cut(s)	148, 607, 624
BmgT120I	GGNCC	3 cut(s)	148, 607, 624
BmiI	GGNNCC	5 cut(s)	103, 130, 150, 255, 660
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	802
BpmI	CTGGAG	2 cut(s)	519, 593
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	647
BsaJI	CCNNGG	2 cut(s)	175, 249
BsaWI	WCCGGW	1 cut(s)	469
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 445, 650
Bse118I	RCCGGY	4 cut(s)	263, 643, 750, 754
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	111
Bse8I	GATNNNNATC	1 cut(s)	199
BseAI	TCCGGA	1 cut(s)	469
BseDI	CCNNGG	2 cut(s)	175, 249
BseGI	GGATG	4 cut(s)	20, 736, 817, 829
BseJI	GATNNNNATC	1 cut(s)	199
BseLI	CCNNNNNNNGG	3 cut(s)	263, 445, 650
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	285, 416
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	3 cut(s)	71, 74, 590
BseSI	GKGCMC	1 cut(s)	663
BseX3I	CGGCCG	1 cut(s)	752
BseXI	GCAGC	7 cut(s)	166, 169, 195, 354, 382, 406, 874
Bsh1285I	CGRYCG	1 cut(s)	755
BshFI	GGCC	2 cut(s)	186, 754
BshNI	GGYRCC	2 cut(s)	101, 658
BsiEI	CGRYCG	1 cut(s)	755
BsiHKAI	GWGCWC	3 cut(s)	333, 477, 701
BsiSI	CCGG	9 cut(s)	251, 264, 446, 470, 622, 644, 651, 751, 755
BslI	CCNNNNNNNGG	3 cut(s)	263, 445, 650
BsnI	GGCC	2 cut(s)	186, 754
Bsp1286I	GDGCHC	5 cut(s)	131, 333, 477, 663, 701
Bsp13I	TCCGGA	1 cut(s)	469
Bsp143I	GATC	4 cut(s)	194, 245, 353, 876
BspANI	GGCC	2 cut(s)	186, 754
BspCNI	CTCAG	2 cut(s)	286, 415
BspEI	TCCGGA	1 cut(s)	469
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	5 cut(s)	103, 130, 150, 255, 660
BspMAI	CTGCAG	2 cut(s)	213, 372
BspMI	ACCTGC	1 cut(s)	542
BspPI	GGATC	2 cut(s)	240, 348
BspT107I	GGYRCC	2 cut(s)	101, 658
BsrDI	GCAATG	1 cut(s)	111
BsrFI	RCCGGY	4 cut(s)	263, 643, 750, 754
BsrI	ACTGG	1 cut(s)	238
BssAI	RCCGGY	4 cut(s)	263, 643, 750, 754
BssECI	CCNNGG	2 cut(s)	175, 249
BssMI	GATC	4 cut(s)	194, 245, 353, 876
BssNI	GRCGYC	1 cut(s)	647
BssSI	CACGAG	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	175
Bst2BI	CACGAG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	647
BstC8I	GCNNGC	7 cut(s)	265, 465, 645, 663, 697, 752, 756
BstDEI	CTNAG	2 cut(s)	294, 402
BstF5I	GGATG	4 cut(s)	20, 736, 817, 829
BstKTI	GATC	4 cut(s)	197, 248, 356, 879
BstMBI	GATC	4 cut(s)	194, 245, 353, 876
BstMCI	CGRYCG	1 cut(s)	755
BstMWI	GCNNNNNNNGC	7 cut(s)	151, 214, 337, 373, 419, 667, 788
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	2 cut(s)	209, 368
BstSLI	GKGCMC	1 cut(s)	663
BstV1I	GCAGC	7 cut(s)	166, 169, 195, 354, 382, 406, 874
BstX2I	RGATCY	3 cut(s)	194, 245, 353
BstYI	RGATCY	3 cut(s)	194, 245, 353
BstZI	CGGCCG	1 cut(s)	752
BsuRI	GGCC	2 cut(s)	186, 754
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	4 cut(s)	20, 736, 817, 829
BveI	ACCTGC	1 cut(s)	542
Cac8I	GCNNGC	7 cut(s)	265, 465, 645, 663, 697, 752, 756
CciI	TCATGA	1 cut(s)	93
Cfr10I	RCCGGY	4 cut(s)	263, 643, 750, 754
Cfr13I	GGNCC	3 cut(s)	148, 607, 624
CseI	GACGC	1 cut(s)	636
Csp6I	GTAC	2 cut(s)	241, 886
CviAII	CATG	4 cut(s)	94, 440, 614, 895
CviQI	GTAC	2 cut(s)	241, 886
DdeI	CTNAG	2 cut(s)	294, 402
DpnI	GATC	4 cut(s)	196, 247, 355, 878
DpnII	GATC	4 cut(s)	194, 245, 353, 876
DraIII	CACNNNGTG	1 cut(s)	616
EaeI	YGGCCR	1 cut(s)	752
EagI	CGGCCG	1 cut(s)	752
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
EciI	GGCGGA	3 cut(s)	195, 806, 836
Ecl136II	GAGCTC	2 cut(s)	331, 699
EclXI	CGGCCG	1 cut(s)	752
Eco130I	CCWWGG	1 cut(s)	175
Eco147I	AGGCCT	1 cut(s)	186
Eco24I	GRGCYC	3 cut(s)	131, 333, 701
Eco47I	GGWCC	3 cut(s)	148, 607, 624
Eco52I	CGGCCG	1 cut(s)	752
Eco53kI	GAGCTC	2 cut(s)	331, 699
Eco57I	CTGAAG	2 cut(s)	614, 875
EcoICRI	GAGCTC	2 cut(s)	331, 699
EcoO109I	RGGNCCY	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	175
EcoT38I	GRGCYC	3 cut(s)	131, 333, 701
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	4 cut(s)	97, 443, 617, 898
FaiI	YATR	7 cut(s)	47, 95, 206, 441, 615, 881, 896
FatI	CATG	4 cut(s)	93, 439, 613, 894
FauI	CCCGC	3 cut(s)	159, 418, 670
FokI	GGATG	4 cut(s)	7, 743, 824, 836
FriOI	GRGCYC	3 cut(s)	131, 333, 701
FspBI	CTAG	1 cut(s)	903
GsuI	CTGGAG	2 cut(s)	519, 593
HaeIII	GGCC	2 cut(s)	186, 754
HapII	CCGG	9 cut(s)	251, 264, 446, 470, 622, 644, 651, 751, 755
HgaI	GACGC	1 cut(s)	636
Hin1I	GRCGYC	1 cut(s)	647
Hin1II	CATG	4 cut(s)	97, 443, 617, 898
HinfI	GANTC	4 cut(s)	11, 449, 745, 872
HpaII	CCGG	9 cut(s)	251, 264, 446, 470, 622, 644, 651, 751, 755
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	2 cut(s)	547, 634
Hpy188III	TCNNGA	7 cut(s)	94, 470, 536, 572, 673, 725, 844
Hpy8I	GTNNAC	1 cut(s)	60
Hpy99I	CGWCG	3 cut(s)	482, 763, 803
HpyAV	CCTTC	5 cut(s)	39, 369, 769, 778, 811
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	4 cut(s)	211, 370, 604, 862
HpyF10VI	GCNNNNNNNGC	7 cut(s)	151, 214, 337, 373, 419, 667, 788
HpyF3I	CTNAG	2 cut(s)	294, 402
Hsp92I	GRCGYC	1 cut(s)	647
Hsp92II	CATG	4 cut(s)	97, 443, 617, 898
Kpn2I	TCCGGA	1 cut(s)	469
KroI	GCCGGC	4 cut(s)	263, 643, 750, 754
KroNI	GCCGGC	4 cut(s)	265, 645, 752, 756
Kzo9I	GATC	4 cut(s)	194, 245, 353, 876
LmnI	GCTCC	7 cut(s)	134, 253, 472, 472, 675, 704, 909
Lsp1109I	GCAGC	7 cut(s)	166, 169, 195, 354, 382, 406, 874
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	1 cut(s)	903
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	4 cut(s)	196, 247, 355, 878
MboI	GATC	4 cut(s)	194, 245, 353, 876
MboII	GAAGA	6 cut(s)	20, 67, 518, 688, 691, 697
MflI	RGATCY	3 cut(s)	194, 245, 353
MhlI	GDGCHC	5 cut(s)	131, 333, 477, 663, 701
MluCI	AATT	1 cut(s)	388
MmeI	TCCRAC	4 cut(s)	89, 477, 612, 849
MroI	TCCGGA	1 cut(s)	469
MroNI	GCCGGC	4 cut(s)	263, 643, 750, 754
MseI	TTAA	1 cut(s)	315
MspA1I	CMGCKG	5 cut(s)	54, 373, 419, 592, 865
MspI	CCGG	9 cut(s)	251, 264, 446, 470, 622, 644, 651, 751, 755
MspR9I	CCNGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	7 cut(s)	151, 214, 337, 373, 419, 667, 788
NaeI	GCCGGC	4 cut(s)	265, 645, 752, 756
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	4 cut(s)	194, 245, 353, 876
NgoMIV	GCCGGC	4 cut(s)	263, 643, 750, 754
NlaIII	CATG	4 cut(s)	97, 443, 617, 898
NlaIV	GGNNCC	5 cut(s)	103, 130, 150, 255, 660
NmeAIII	GCCGAG	1 cut(s)	766
PagI	TCATGA	1 cut(s)	93
PaqCI	CACCTGC	1 cut(s)	542
PceI	AGGCCT	1 cut(s)	186
PdiI	GCCGGC	4 cut(s)	265, 645, 752, 756
PfeI	GAWTC	4 cut(s)	11, 449, 745, 872
PflFI	GACNNNGTC	1 cut(s)	628
PpuMI	RGGWCCY	1 cut(s)	148
Psp124BI	GAGCTC	2 cut(s)	333, 701
Psp5II	RGGWCCY	1 cut(s)	148
PspN4I	GGNNCC	5 cut(s)	103, 130, 150, 255, 660
PspPI	GGNCC	3 cut(s)	148, 607, 624
PspPPI	RGGWCCY	1 cut(s)	148
PstI	CTGCAG	2 cut(s)	213, 372
PsuI	RGATCY	3 cut(s)	194, 245, 353
PsyI	GACNNNGTC	1 cut(s)	628
PvuII	CAGCTG	2 cut(s)	54, 592
RsaI	GTAC	2 cut(s)	242, 887
RsaNI	GTAC	2 cut(s)	241, 886
SacI	GAGCTC	2 cut(s)	333, 701
SaqAI	TTAA	1 cut(s)	315
Sau3AI	GATC	4 cut(s)	194, 245, 353, 876
Sau96I	GGNCC	3 cut(s)	148, 607, 624
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	5 cut(s)	131, 333, 477, 663, 701
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	2 cut(s)	209, 368
SinI	GGWCC	3 cut(s)	148, 607, 624
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	1 cut(s)	388
SseBI	AGGCCT	1 cut(s)	186
SspMI	CTAG	1 cut(s)	903
SstI	GAGCTC	2 cut(s)	333, 701
StuI	AGGCCT	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	4 cut(s)	273, 333, 459, 875
TasI	AATT	1 cut(s)	388
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	4 cut(s)	376, 416, 419, 791
TfiI	GAWTC	4 cut(s)	11, 449, 745, 872
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseI	GCWGC	7 cut(s)	154, 157, 208, 367, 370, 419, 862
TspDTI	ATGAA	2 cut(s)	698, 820
Tth111I	GACNNNGTC	1 cut(s)	628
VpaK11BI	GGWCC	3 cut(s)	148, 607, 624
XspI	CTAG	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.