Rw1G019270

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0008302
Physical Location & Seq
Forward (+)
42195390 .. 42196148
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G019270.1

Sequence Viewer

Length: 759 bp
ATGTTTGAGGAATCTGTATCCTCCCTACCCTCAATTTGGGCCTCCATGAACAGCTGGTTAACCCCAACTGTCCTCTTCCTCCTCCTCCAGCTCATGATTGGCATCATCTTCATTGCTTCCAGCCTCAGCACCCAGAAGCCCCACAACCAAGACAACCACCACCAACAAGGCTTGGCGAGATCTCCCTTTGTTTTGCAGCGGTTCAAATCCATAAACTTCTACTCCTACAGATCTCTGGAACCGGCCACGAATTACGAAAAATCCCCTGAATTCGAGACCCATTTTGCTTTCCCGCACGCCCAGGAGGTTGAACAGCCCAAGCTCCCCAGATCTCCTTCCATGCTGGAGCGGCTCCAGTCCTTCAAGTTCCAGTTCCACTTCCCCAAAGAATCCAGCCCGCTACAGCCCCGAGACTTCGTAGTCCCGGACCCGGAACCGAAACCCCATTTCAGTACTTACGAGCACTCTCATGAAGACGATGAAGAGTCGGAAGAGGAGGCCGGAGAGTTGGATGAGGACCAATTCGAAGCCGAAGAAGAAGGTGAAGAGAAAGACCAGACCCAGCGCAAGTCGGCATTTGCTCATTTCGCGGCGGACGATTATATCATAAAGTGTTCATATTTTTTTTTAAAAAAAAACACTATTATGTATATATATACTATTTTTGTTTGCAATATATCAAAACTATGCAAGTGGTCTGGTGGTTGGGCCATTCATTTGCATATGCTTTGGGAGGGGTTTGAATCTCCTCAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

252

Amino Acids

29.47

Weight (kDa)

5.07

Isoelectric Point (pI)

57.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4408 PF14364 10 - 42 6.5e-11 Domain of unknown function (DUF4408)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 419
AccBSI CCGCTC 1 cut(s) 349
AccII CGCG 1 cut(s) 590
AciI CCGC 6 cut(s) 199, 293, 349, 398, 590, 593
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 269
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 2 cut(s) 36, 430
AgsI TTSAA 4 cut(s) 205, 311, 364, 743
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 3 cut(s) 54, 91, 322
AluI AGCT 3 cut(s) 54, 91, 322
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 2 cut(s) 269, 405
Ama87I CYCGRG 1 cut(s) 408
AoxI GGCC 4 cut(s) 39, 243, 498, 708
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 269
AspLEI GCGC 1 cut(s) 567
AspS9I GGNCC 4 cut(s) 39, 427, 517, 708
AsuC2I CCSGG 2 cut(s) 425, 431
AsuHPI GGTGA 1 cut(s) 554
AsuII TTCGAA 1 cut(s) 525
AvaI CYCGRG 1 cut(s) 408
AvaII GGWCC 2 cut(s) 427, 517
BbsI GAAGAC 1 cut(s) 480
Bbv12I GWGCWC 1 cut(s) 465
BbvCI CCTCAGC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 208
BciT130I CCWGG 1 cut(s) 302
BciVI GTATCC 1 cut(s) 28
BcnI CCSGG 2 cut(s) 425, 431
BcoDI GTCTC 2 cut(s) 269, 405
BfmI CTRYAG 2 cut(s) 226, 401
BfuI GTATCC 1 cut(s) 28
BglII AGATCT 3 cut(s) 179, 230, 329
BisI GCNGC 3 cut(s) 197, 350, 591
BlsI GCNGC 3 cut(s) 198, 351, 592
BmcAI AGTACT 1 cut(s) 454
Bme1390I CCNGG 3 cut(s) 302, 425, 431
Bme18I GGWCC 2 cut(s) 427, 517
BmeT110I CYCGRG 1 cut(s) 408
BmgT120I GGNCC 4 cut(s) 39, 427, 517, 708
BmiI GGNNCC 4 cut(s) 240, 353, 429, 435
BmrFI CCNGG 3 cut(s) 302, 425, 431
BmsI GCATC 1 cut(s) 111
BpiI GAAGAC 1 cut(s) 480
BpmI CTGGAG 3 cut(s) 71, 338, 365
Bpu10I CCTNAGC 1 cut(s) 125
Bpu14I TTCGAA 1 cut(s) 525
BpuMI CCSGG 2 cut(s) 425, 431
BsaBI GATNNNNATC 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 300
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 430
Bse118I RCCGGY 1 cut(s) 241
Bse1I ACTGG 2 cut(s) 355, 370
Bse3DI GCAATG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 101
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 517
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 2 cut(s) 36, 430
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 139
BseNI ACTGG 2 cut(s) 355, 370
BseRI GAGGAG 4 cut(s) 71, 74, 509, 738
BseXI GCAGC 1 cut(s) 208
BseYI CCCAGC 1 cut(s) 561
Bsh1236I CGCG 1 cut(s) 590
BshFI GGCC 4 cut(s) 41, 245, 500, 710
BsiHKAI GWGCWC 1 cut(s) 465
BsiHKCI CYCGRG 1 cut(s) 408
BsiSI CCGG 4 cut(s) 242, 425, 431, 501
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 2 cut(s) 36, 430
BsmAI GTCTC 2 cut(s) 269, 405
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 4 cut(s) 41, 245, 500, 710
Bso31I GGTCTC 1 cut(s) 269
BsoBI CYCGRG 1 cut(s) 408
Bsp119I TTCGAA 1 cut(s) 525
Bsp1286I GDGCHC 1 cut(s) 465
Bsp143I GATC 3 cut(s) 179, 230, 329
BspACI CCGC 6 cut(s) 199, 293, 349, 398, 590, 593
BspANI GGCC 4 cut(s) 41, 245, 500, 710
BspCNI CTCAG 1 cut(s) 138
BspFNI CGCG 1 cut(s) 590
BspHI TCATGA 2 cut(s) 93, 469
BspLI GGNNCC 4 cut(s) 240, 353, 429, 435
BspT104I TTCGAA 1 cut(s) 525
BspTNI GGTCTC 1 cut(s) 269
BsrBI CCGCTC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 241
BsrI ACTGG 2 cut(s) 355, 370
BssAI RCCGGY 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 3 cut(s) 179, 230, 329
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 4 cut(s) 80, 477, 486, 540
BstBI TTCGAA 1 cut(s) 525
BstC8I GCNNGC 2 cut(s) 297, 398
BstDEI CTNAG 1 cut(s) 125
BstF5I GGATG 1 cut(s) 517
BstFNI CGCG 1 cut(s) 590
BstHHI GCGC 1 cut(s) 567
BstKTI GATC 3 cut(s) 182, 233, 332
BstMAI GTCTC 2 cut(s) 269, 405
BstMBI GATC 3 cut(s) 179, 230, 329
BstMWI GCNNNNNNNGC 2 cut(s) 349, 587
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 3 cut(s) 300, 423, 429
BstSFI CTRYAG 2 cut(s) 226, 401
BstUI CGCG 1 cut(s) 590
BstV1I GCAGC 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 480
BstX2I RGATCY 3 cut(s) 179, 230, 329
BstYI RGATCY 3 cut(s) 179, 230, 329
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 4 cut(s) 41, 245, 500, 710
BtsCI GGATG 1 cut(s) 517
Cac8I GCNNGC 2 cut(s) 297, 398
CciI TCATGA 2 cut(s) 93, 469
CfoI GCGC 1 cut(s) 567
Cfr10I RCCGGY 1 cut(s) 241
Cfr13I GGNCC 4 cut(s) 39, 427, 517, 708
Csp6I GTAC 1 cut(s) 453
CviAII CATG 4 cut(s) 46, 94, 340, 470
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 1 cut(s) 125
DpnI GATC 3 cut(s) 181, 232, 331
DpnII GATC 3 cut(s) 179, 230, 329
DraI TTTAAA 1 cut(s) 630
DrdI GACNNNNNNGTC 1 cut(s) 419
DseDI GACNNNNNNGTC 1 cut(s) 419
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 4 cut(s) 80, 477, 486, 540
EarI CTCTTC 4 cut(s) 80, 477, 486, 540
EciI GGCGGA 1 cut(s) 608
Eco31I GGTCTC 1 cut(s) 269
Eco47I GGWCC 2 cut(s) 427, 517
Eco88I CYCGRG 1 cut(s) 408
EcoRI GAATTC 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 300
FaeI CATG 4 cut(s) 49, 97, 343, 473
FaqI GGGAC 1 cut(s) 407
FatI CATG 4 cut(s) 45, 93, 339, 469
FauI CCCGC 2 cut(s) 300, 405
FauNDI CATATG 1 cut(s) 723
Fnu4HI GCNGC 3 cut(s) 197, 350, 591
FokI GGATG 1 cut(s) 524
Fsp4HI GCNGC 3 cut(s) 197, 350, 591
GlaI GCGC 1 cut(s) 566
GluI GCNGC 3 cut(s) 197, 350, 591
GsaI CCCAGC 1 cut(s) 565
GsuI CTGGAG 3 cut(s) 71, 338, 365
HaeIII GGCC 4 cut(s) 41, 245, 500, 710
HapII CCGG 4 cut(s) 242, 425, 431, 501
HhaI GCGC 1 cut(s) 567
Hin1II CATG 4 cut(s) 49, 97, 343, 473
Hin6I GCGC 1 cut(s) 565
HinP1I GCGC 1 cut(s) 565
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 4 cut(s) 11, 389, 485, 743
HpaI GTTAAC 1 cut(s) 60
HpaII CCGG 4 cut(s) 242, 425, 431, 501
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 4 cut(s) 94, 236, 274, 470
Hpy8I GTNNAC 1 cut(s) 60
HpyAV CCTTC 3 cut(s) 345, 370, 533
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 4 cut(s) 196, 672, 690, 721
HpyF10VI GCNNNNNNNGC 2 cut(s) 349, 587
HpyF3I CTNAG 1 cut(s) 125
Hsp92II CATG 4 cut(s) 49, 97, 343, 473
HspAI GCGC 1 cut(s) 565
KspAI GTTAAC 1 cut(s) 60
Kzo9I GATC 3 cut(s) 179, 230, 329
LmnI GCTCC 3 cut(s) 327, 346, 357
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 1 cut(s) 111
MalI GATC 3 cut(s) 181, 232, 331
MbiI CCGCTC 1 cut(s) 349
MboI GATC 3 cut(s) 179, 230, 329
MboII GAAGA 8 cut(s) 67, 100, 485, 494, 503, 545, 548, 557
MflI RGATCY 3 cut(s) 179, 230, 329
MhlI GDGCHC 1 cut(s) 465
MluCI AATT 4 cut(s) 33, 250, 269, 521
MlyI GAGTC 1 cut(s) 494
MmeI TCCRAC 2 cut(s) 468, 489
MseI TTAA 3 cut(s) 59, 629, 757
MslI CAYNNNNRTG 2 cut(s) 468, 644
MspA1I CMGCKG 2 cut(s) 54, 199
MspI CCGG 4 cut(s) 242, 425, 431, 501
MspR9I CCNGG 3 cut(s) 302, 425, 431
MvaI CCWGG 1 cut(s) 302
MvnI CGCG 1 cut(s) 590
MwoI GCNNNNNNNGC 2 cut(s) 349, 587
NciI CCSGG 2 cut(s) 425, 431
NdeI CATATG 1 cut(s) 723
NdeII GATC 3 cut(s) 179, 230, 329
NlaIII CATG 4 cut(s) 49, 97, 343, 473
NlaIV GGNNCC 4 cut(s) 240, 353, 429, 435
NspV TTCGAA 1 cut(s) 525
PagI TCATGA 2 cut(s) 93, 469
PcsI WCGNNNNNNNCGW 1 cut(s) 594
PfeI GAWTC 3 cut(s) 11, 389, 743
PfoI TCCNGGA 1 cut(s) 423
PkrI GCNGC 3 cut(s) 198, 351, 592
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
Psp6I CCWGG 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 561
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 4 cut(s) 240, 353, 429, 435
PspPI GGNCC 4 cut(s) 39, 427, 517, 708
PsuI RGATCY 3 cut(s) 179, 230, 329
PvuII CAGCTG 1 cut(s) 54
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
RseI CAYNNNNRTG 2 cut(s) 468, 644
SaqAI TTAA 3 cut(s) 59, 629, 757
SatI GCNGC 3 cut(s) 197, 350, 591
Sau3AI GATC 3 cut(s) 179, 230, 329
Sau96I GGNCC 4 cut(s) 39, 427, 517, 708
ScaI AGTACT 1 cut(s) 454
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 3 cut(s) 302, 425, 431
SduI GDGCHC 1 cut(s) 465
SetI ASST 6 cut(s) 56, 93, 309, 324, 544, 757
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 2 cut(s) 226, 401
SfuI TTCGAA 1 cut(s) 525
SinI GGWCC 2 cut(s) 427, 517
SmiMI CAYNNNNRTG 2 cut(s) 468, 644
Sse9I AATT 4 cut(s) 33, 250, 269, 521
SsiI CCGC 6 cut(s) 199, 293, 349, 398, 590, 593
StyD4I CCNGG 3 cut(s) 300, 423, 429
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 2 cut(s) 273, 525
TasI AATT 4 cut(s) 33, 250, 269, 521
TatI WGTACW 1 cut(s) 452
TauI GCSGC 2 cut(s) 352, 593
TfiI GAWTC 3 cut(s) 11, 389, 743
Tru1I TTAA 3 cut(s) 59, 629, 757
Tru9I TTAA 3 cut(s) 59, 629, 757
TseI GCWGC 1 cut(s) 196
TspDTI ATGAA 6 cut(s) 62, 100, 486, 495, 606, 704
VpaK11BI GGWCC 2 cut(s) 427, 517
XapI RAATTY 1 cut(s) 269
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
ZrmI AGTACT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.