MD08G1062500.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0008302
Physical Location & Seq
Forward (+)
4933113 .. 4934495
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1062500.v1.1.491

Sequence Viewer

Length: 945 bp
ATGAAAATCTCCACCCAAATAAAGGAGGCAGAGAAGCACACACCACACGGAAGCTTTCTAATCTGCCCTTCTTCATCTCCTCATTTTTTTCACCTTCCTCTCTCTCTAACACAGTCAGCCATGTTTGAAGAATCCGTGACATCCCTGCCTTCAATTTGGGCTTCCATGAACAGCTGGTTCACTCCCACTGTTCTATCTCCGTCTATGCTGCAGAGGCTCAAATCCATCAACCTCTACCAGTACAGATCCCCGGAGCCACACGCCGCCACTTTCGAAAAACCCCCGGAAACTACTGAGGATACCCATTACGCCTTTGAGCACGCCCACGAGCTTGAACAGCCCCAGTTCACCAGATCCCCTTCTCTGCTGCAGCGGCTCAAGTCCATCAATTTCCACATTCCACAAGATTTCTCCAACAACCCATCTCAGCACATCGCGGCCGCAGCCCCGCCGCACAAGACCCATGAGCCGGAATCCCATTTCGAGCAAGCTCCCGAGCACGAGGAGTTCCCAGATGACGACCGTTTGGAAGAACACGAGCACCCAGAACCAGAAACTCCAGATTTTTCAGAAGCAGGGGATAAACAGAGCGACCTGGAGGAGATTTTCAGCCAGCTGAAACCGTTACGGGACCGCCACGTGAACCGGACCAAGTCAGACACCAAGCCGGCGTCCGGCGAGGTGCCCGTCAAGCTCCCGCAGAAGATGAAGAAATCTGCGAGCTCCAAGTCTGCTTTTGCTCATTTCCAGGAGGATGATATCGTTGAGAGTCGCCGGCCGGCGACCGTGAGGGAGAGAAAGGTGGCGAAGATGGCGGAGGACGACGAGGAGGTGGACGCCAAGGCGGATGATTTCATCAACAAGTTCAAGAACCAGCTGAAGATGCAGCGGCTGGATTCGATCATAAGGTACAAGGACATGATCACTAGAGGGAGTGATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

315

Amino Acids

36.06

Weight (kDa)

5.76

Isoelectric Point (pI)

59.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 275 - 310 3.4e-16 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 682
AccII CGCG 1 cut(s) 437
AclWI GGATC 2 cut(s) 240, 348
AcoI YGGCCR 2 cut(s) 438, 776
AcuI CTGAAG 1 cut(s) 899
AcvI CACGTG 1 cut(s) 640
AcyI GRCGYC 2 cut(s) 671, 837
AfaI GTAC 2 cut(s) 242, 911
AfiI CCNNNNNNNGG 3 cut(s) 22, 469, 674
AgsI TTSAA 4 cut(s) 128, 153, 335, 868
AjnI CCWGG 2 cut(s) 594, 747
AluBI AGCT 8 cut(s) 54, 174, 331, 491, 616, 694, 723, 877
AluI AGCT 8 cut(s) 54, 174, 331, 491, 616, 694, 723, 877
Alw21I GWGCWC 4 cut(s) 321, 501, 543, 725
AlwI GGATC 2 cut(s) 240, 348
AlwNI CAGNNNCTG 1 cut(s) 892
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 2 cut(s) 438, 776
ApeKI GCWGC 5 cut(s) 208, 367, 370, 443, 886
AspS9I GGNCC 2 cut(s) 631, 648
AsuC2I CCSGG 2 cut(s) 251, 284
AsuHPI GGTGA 2 cut(s) 83, 340
AsuII TTCGAA 1 cut(s) 273
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 2 cut(s) 631, 648
BaeGI GKGCMC 1 cut(s) 687
BanI GGYRCC 1 cut(s) 682
BanII GRGCYC 1 cut(s) 725
BauI CACGAG 3 cut(s) 326, 500, 536
BbrPI CACGTG 1 cut(s) 640
Bbv12I GWGCWC 4 cut(s) 321, 501, 543, 725
BbvI GCAGC 5 cut(s) 195, 354, 382, 455, 898
BccI CCATC 4 cut(s) 233, 392, 430, 805
BciT130I CCWGG 2 cut(s) 596, 749
BciVI GTATCC 1 cut(s) 292
BclI TGATCA 1 cut(s) 921
BcnI CCSGG 2 cut(s) 251, 284
BfaI CTAG 1 cut(s) 927
BfmI CTRYAG 2 cut(s) 209, 368
BfuI GTATCC 1 cut(s) 292
Bme1390I CCNGG 4 cut(s) 251, 284, 596, 749
Bme18I GGWCC 2 cut(s) 631, 648
BmeT110I CYCGRG 1 cut(s) 494
BmgT120I GGNCC 2 cut(s) 631, 648
BmiI GGNNCC 3 cut(s) 255, 632, 684
BmrFI CCNGG 4 cut(s) 251, 284, 596, 749
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 1 cut(s) 873
BmuI ACTGGG 1 cut(s) 337
BpmI CTGGAG 2 cut(s) 543, 617
Bpu14I TTCGAA 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 2 cut(s) 251, 284
BsaAI YACGTR 1 cut(s) 640
BsaHI GRCGYC 2 cut(s) 671, 837
BsaJI CCNNGG 3 cut(s) 249, 282, 840
BsaWI WCCGGW 1 cut(s) 645
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 469, 674
Bse118I RCCGGY 3 cut(s) 667, 774, 778
Bse1I ACTGG 2 cut(s) 238, 343
BseBI CCWGG 2 cut(s) 596, 749
BseDI CCNNGG 3 cut(s) 249, 282, 840
BseGI GGATG 3 cut(s) 140, 760, 853
BseLI CCNNNNNNNGG 3 cut(s) 22, 469, 674
BseMII CTCAG 2 cut(s) 285, 440
BseNI ACTGG 2 cut(s) 238, 343
BseRI GAGGAG 4 cut(s) 69, 518, 614, 842
BseSI GKGCMC 1 cut(s) 687
BseX3I CGGCCG 2 cut(s) 438, 776
BseXI GCAGC 5 cut(s) 195, 354, 382, 455, 898
Bsh1236I CGCG 1 cut(s) 437
Bsh1285I CGRYCG 4 cut(s) 441, 523, 779, 786
BshFI GGCC 2 cut(s) 440, 778
BshNI GGYRCC 1 cut(s) 682
BsiEI CGRYCG 4 cut(s) 441, 523, 779, 786
BsiHKAI GWGCWC 4 cut(s) 321, 501, 543, 725
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 8 cut(s) 251, 284, 470, 646, 668, 675, 775, 779
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 3 cut(s) 22, 469, 674
BsmFI GGGAC 1 cut(s) 644
BsnI GGCC 2 cut(s) 440, 778
BsoBI CYCGRG 1 cut(s) 494
Bsp119I TTCGAA 1 cut(s) 273
Bsp1286I GDGCHC 5 cut(s) 321, 501, 543, 687, 725
Bsp143I GATC 4 cut(s) 245, 353, 900, 921
BspANI GGCC 2 cut(s) 440, 778
BspCNI CTCAG 2 cut(s) 286, 439
BspFNI CGCG 1 cut(s) 437
BspLI GGNNCC 3 cut(s) 255, 632, 684
BspMAI CTGCAG 2 cut(s) 213, 372
BspPI GGATC 2 cut(s) 240, 348
BspT104I TTCGAA 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 682
BsrFI RCCGGY 3 cut(s) 667, 774, 778
BsrI ACTGG 2 cut(s) 238, 343
BssAI RCCGGY 3 cut(s) 667, 774, 778
BssECI CCNNGG 3 cut(s) 249, 282, 840
BssMI GATC 4 cut(s) 245, 353, 900, 921
BssNI GRCGYC 2 cut(s) 671, 837
BssSI CACGAG 3 cut(s) 326, 500, 536
BssT1I CCWWGG 1 cut(s) 840
Bst2BI CACGAG 3 cut(s) 326, 500, 536
Bst2UI CCWGG 2 cut(s) 596, 749
Bst4CI ACNGT 5 cut(s) 114, 190, 524, 624, 787
BstACI GRCGYC 2 cut(s) 671, 837
BstBAI YACGTR 1 cut(s) 640
BstBI TTCGAA 1 cut(s) 273
BstC8I GCNNGC 7 cut(s) 321, 489, 614, 669, 721, 776, 780
BstDEI CTNAG 2 cut(s) 294, 426
BstF5I GGATG 3 cut(s) 140, 760, 853
BstFNI CGCG 1 cut(s) 437
BstKTI GATC 4 cut(s) 248, 356, 903, 924
BstMBI GATC 4 cut(s) 245, 353, 900, 921
BstMCI CGRYCG 4 cut(s) 441, 523, 779, 786
BstMWI GCNNNNNNNGC 7 cut(s) 214, 337, 373, 443, 691, 812, 883
BstNI CCWGG 2 cut(s) 596, 749
BstSCI CCNGG 4 cut(s) 249, 282, 594, 747
BstSFI CTRYAG 2 cut(s) 209, 368
BstSLI GKGCMC 1 cut(s) 687
BstUI CGCG 1 cut(s) 437
BstV1I GCAGC 5 cut(s) 195, 354, 382, 455, 898
BstX2I RGATCY 2 cut(s) 245, 353
BstYI RGATCY 2 cut(s) 245, 353
BstZI CGGCCG 2 cut(s) 438, 776
BsuI GTATCC 1 cut(s) 292
BsuRI GGCC 2 cut(s) 440, 778
BtgZI GCGATG 1 cut(s) 418
BtsCI GGATG 3 cut(s) 140, 760, 853
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 7 cut(s) 321, 489, 614, 669, 721, 776, 780
CaiI CAGNNNCTG 1 cut(s) 892
CciNI GCGGCCGC 1 cut(s) 438
Cfr10I RCCGGY 3 cut(s) 667, 774, 778
Cfr13I GGNCC 2 cut(s) 631, 648
CseI GACGC 2 cut(s) 660, 845
Csp6I GTAC 2 cut(s) 241, 910
CviAII CATG 4 cut(s) 121, 166, 464, 919
CviQI GTAC 2 cut(s) 241, 910
DdeI CTNAG 2 cut(s) 294, 426
DpnI GATC 4 cut(s) 247, 355, 902, 923
DpnII GATC 4 cut(s) 245, 353, 900, 921
EaeI YGGCCR 2 cut(s) 438, 776
EagI CGGCCG 2 cut(s) 438, 776
EciI GGCGGA 2 cut(s) 830, 860
Ecl136II GAGCTC 1 cut(s) 723
EclXI CGGCCG 2 cut(s) 438, 776
Eco130I CCWWGG 1 cut(s) 840
Eco24I GRGCYC 1 cut(s) 725
Eco32I GATATC 1 cut(s) 760
Eco47I GGWCC 2 cut(s) 631, 648
Eco52I CGGCCG 2 cut(s) 438, 776
Eco53kI GAGCTC 1 cut(s) 723
Eco57I CTGAAG 1 cut(s) 899
Eco72I CACGTG 1 cut(s) 640
Eco88I CYCGRG 1 cut(s) 494
EcoICRI GAGCTC 1 cut(s) 723
EcoRII CCWGG 2 cut(s) 594, 747
EcoRV GATATC 1 cut(s) 760
EcoT14I CCWWGG 1 cut(s) 840
EcoT38I GRGCYC 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 840
FaeI CATG 4 cut(s) 124, 169, 467, 922
FaiI YATR 6 cut(s) 122, 167, 206, 465, 905, 920
FaqI GGGAC 1 cut(s) 644
FatI CATG 4 cut(s) 120, 165, 463, 918
FauI CCCGC 2 cut(s) 456, 705
FbaI TGATCA 1 cut(s) 921
FokI GGATG 3 cut(s) 127, 767, 860
FriOI GRGCYC 1 cut(s) 725
FspBI CTAG 1 cut(s) 927
GsuI CTGGAG 2 cut(s) 543, 617
HaeIII GGCC 2 cut(s) 440, 778
HapII CCGG 8 cut(s) 251, 284, 470, 646, 668, 675, 775, 779
HgaI GACGC 2 cut(s) 660, 845
Hin1I GRCGYC 2 cut(s) 671, 837
Hin1II CATG 4 cut(s) 124, 169, 467, 922
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 4 cut(s) 131, 473, 769, 896
HpaII CCGG 8 cut(s) 251, 284, 470, 646, 668, 675, 775, 779
HphI GGTGA 2 cut(s) 83, 340
Hpy166II GTNNAC 4 cut(s) 180, 348, 643, 835
Hpy188I TCNGA 2 cut(s) 571, 658
Hpy188III TCNNGA 3 cut(s) 494, 560, 868
Hpy8I GTNNAC 4 cut(s) 180, 348, 643, 835
Hpy99I CGWCG 1 cut(s) 827
HpyAV CCTTC 4 cut(s) 78, 104, 159, 369
HpyCH4III ACNGT 5 cut(s) 114, 190, 524, 624, 787
HpyCH4IV ACGT 1 cut(s) 639
HpyCH4V TGCA 3 cut(s) 211, 370, 886
HpyF10VI GCNNNNNNNGC 7 cut(s) 214, 337, 373, 443, 691, 812, 883
HpyF3I CTNAG 2 cut(s) 294, 426
HpySE526I ACGT 1 cut(s) 639
Hsp92I GRCGYC 2 cut(s) 671, 837
Hsp92II CATG 4 cut(s) 124, 169, 467, 922
KroI GCCGGC 3 cut(s) 667, 774, 778
KroNI GCCGGC 3 cut(s) 669, 776, 780
Ksp22I TGATCA 1 cut(s) 921
Kzo9I GATC 4 cut(s) 245, 353, 900, 921
LmnI GCTCC 4 cut(s) 253, 496, 699, 728
Lsp1109I GCAGC 5 cut(s) 195, 354, 382, 455, 898
LweI GCATC 1 cut(s) 873
MaeI CTAG 1 cut(s) 927
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 2 cut(s) 136, 624
MalI GATC 4 cut(s) 247, 355, 902, 923
MboI GATC 4 cut(s) 245, 353, 900, 921
MboII GAAGA 7 cut(s) 63, 140, 542, 715, 721, 820, 892
MflI RGATCY 2 cut(s) 245, 353
MhlI GDGCHC 5 cut(s) 321, 501, 543, 687, 725
MluCI AATT 2 cut(s) 153, 388
MlyI GAGTC 1 cut(s) 778
MmeI TCCRAC 1 cut(s) 438
MroNI GCCGGC 3 cut(s) 667, 774, 778
MspA1I CMGCKG 5 cut(s) 174, 373, 616, 877, 889
MspI CCGG 8 cut(s) 251, 284, 470, 646, 668, 675, 775, 779
MspR9I CCNGG 4 cut(s) 251, 284, 596, 749
MvaI CCWGG 2 cut(s) 596, 749
MvnI CGCG 1 cut(s) 437
MwoI GCNNNNNNNGC 7 cut(s) 214, 337, 373, 443, 691, 812, 883
NaeI GCCGGC 3 cut(s) 669, 776, 780
NciI CCSGG 2 cut(s) 251, 284
NdeII GATC 4 cut(s) 245, 353, 900, 921
NgoMIV GCCGGC 3 cut(s) 667, 774, 778
NlaIII CATG 4 cut(s) 124, 169, 467, 922
NlaIV GGNNCC 3 cut(s) 255, 632, 684
NmuCI GTSAC 1 cut(s) 136
NotI GCGGCCGC 1 cut(s) 438
NspV TTCGAA 1 cut(s) 273
PdiI GCCGGC 3 cut(s) 669, 776, 780
PfeI GAWTC 3 cut(s) 131, 473, 896
PflFI GACNNNGTC 1 cut(s) 652
PfoI TCCNGGA 1 cut(s) 747
PleI GAGTC 1 cut(s) 777
PmaCI CACGTG 1 cut(s) 640
PmlI CACGTG 1 cut(s) 640
PpsI GAGTC 1 cut(s) 777
Ppu21I YACGTR 1 cut(s) 640
Psp124BI GAGCTC 1 cut(s) 725
Psp6I CCWGG 2 cut(s) 594, 747
PspCI CACGTG 1 cut(s) 640
PspGI CCWGG 2 cut(s) 594, 747
PspN4I GGNNCC 3 cut(s) 255, 632, 684
PspPI GGNCC 2 cut(s) 631, 648
PstI CTGCAG 2 cut(s) 213, 372
PstNI CAGNNNCTG 1 cut(s) 892
PsuI RGATCY 2 cut(s) 245, 353
PsyI GACNNNGTC 1 cut(s) 652
PvuII CAGCTG 3 cut(s) 174, 616, 877
RsaI GTAC 2 cut(s) 242, 911
RsaNI GTAC 2 cut(s) 241, 910
SacI GAGCTC 1 cut(s) 725
Sau3AI GATC 4 cut(s) 245, 353, 900, 921
Sau96I GGNCC 2 cut(s) 631, 648
SchI GAGTC 1 cut(s) 778
ScrFI CCNGG 4 cut(s) 251, 284, 596, 749
SduI GDGCHC 5 cut(s) 321, 501, 543, 687, 725
SfaNI GCATC 1 cut(s) 873
SfcI CTRYAG 2 cut(s) 209, 368
SfuI TTCGAA 1 cut(s) 273
SinI GGWCC 2 cut(s) 631, 648
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 2 cut(s) 153, 388
SspMI CTAG 1 cut(s) 927
SstI GAGCTC 1 cut(s) 725
StyD4I CCNGG 4 cut(s) 249, 282, 594, 747
StyI CCWWGG 1 cut(s) 840
TaaI ACNGT 5 cut(s) 114, 190, 524, 624, 787
TaiI ACGT 1 cut(s) 642
TaqI TCGA 3 cut(s) 273, 483, 899
TasI AATT 2 cut(s) 153, 388
TatI WGTACW 1 cut(s) 240
TauI GCSGC 6 cut(s) 266, 376, 440, 443, 454, 892
TfiI GAWTC 3 cut(s) 131, 473, 896
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 5 cut(s) 208, 367, 370, 443, 886
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 5 cut(s) 17, 63, 182, 722, 844
TspGWI ACGGA 3 cut(s) 63, 124, 189
TspRI CASTG 1 cut(s) 193
Tth111I GACNNNGTC 1 cut(s) 652
VpaK11BI GGWCC 2 cut(s) 631, 648
XspI CTAG 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.