Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005220.1

Orthogroup ID

OG0008302

Physical Location & Seq

Genomic Coordinates Reverse (-)

22970 .. 23482

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005220.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgaacagctggttaaccccaactgtcctcttcctcctcctccagctcatgattggcatcatcttcattgcttccagcctcggcacccagaagccccacaaccaagacaaccaccaccaacaaggcttggcgagatctccctttgttttgcagcggttcaaatccataaactactactcctacagatctctggaaccggccacgaattatgaaaaatcccctgaatccgagacccattttgctttcccgcacgcccaggaggttgaacagcccaagctccccagatctccttccatgctggagcggctccagtccttcaagttccagttccacttccccaaagaatccagcccgctacagccccgagacttcgtagtcccggacccggaaccgaaaccccatttcagtacttacgagcactctcatgaagacgatgaagagtcggaagaggaggccggagagttggatgaggaccaattcgaagccgaagaagaaggtgaagagaaagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408 DUF761

Protein Analysis

170

Amino Acids

19.83

Weight (kDa)

4.76

Isoelectric Point (pI)

68.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26110
fragaria_vesca	FvH4_2g31830
malus_domestica	MD08G1062500.v1.1 MD15G1059100.v1.1
prunus_persica	Prupe.1G411600_v2.0.a1
pyrus_communis	pycom08g05150 pycom08g05170 pycom15g05550
rosa_chinensis	RchiOBHm_Chr6g0310991
rosa_laevigata	RLG00000010444
rosa_multiflora	Rmu_co8298593.1_g000001 Rmu_co8387599.1_g000001 Rmu_sc0005220.1_g000004
rosa_roxburghii	Rroxscaffold_7G00158120
rosa_rugosa	Rorug06G0384700
rosa_samantha	Rh5BG107200 Rh6AG498500 Rh6BG508900 Rh6CG514800 Rh6DG501400
rosa_wichuraiana	Rw0G006860 Rw1G019270 Rw6G043400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
AccB1I	GGYRCC	1 cut(s)	83
AccBSI	CCGCTC	1 cut(s)	304
AciI	CCGC	4 cut(s)	154, 248, 304, 353
AcoI	YGGCCR	1 cut(s)	198
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	3 cut(s)	160, 266, 319
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	3 cut(s)	9, 46, 277
AluI	AGCT	3 cut(s)	9, 46, 277
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	2 cut(s)	224, 360
Ama87I	CYCGRG	1 cut(s)	363
AoxI	GGCC	2 cut(s)	198, 453
ApeKI	GCWGC	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	382, 472
AsuC2I	CCSGG	2 cut(s)	380, 386
AsuHPI	GGTGA	1 cut(s)	509
AsuII	TTCGAA	1 cut(s)	480
AvaI	CYCGRG	1 cut(s)	363
AvaII	GGWCC	2 cut(s)	382, 472
BanI	GGYRCC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	257
BcnI	CCSGG	2 cut(s)	380, 386
BcoDI	GTCTC	2 cut(s)	224, 360
BfaI	CTAG	1 cut(s)	511
BfmI	CTRYAG	2 cut(s)	181, 356
BglII	AGATCT	3 cut(s)	134, 185, 284
BisI	GCNGC	2 cut(s)	152, 305
BlsI	GCNGC	2 cut(s)	153, 306
BmcAI	AGTACT	1 cut(s)	409
Bme1390I	CCNGG	3 cut(s)	257, 380, 386
Bme18I	GGWCC	2 cut(s)	382, 472
BmeT110I	CYCGRG	1 cut(s)	363
BmgT120I	GGNCC	2 cut(s)	382, 472
BmiI	GGNNCC	5 cut(s)	85, 195, 308, 384, 390
BmrFI	CCNGG	3 cut(s)	257, 380, 386
BmsI	GCATC	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	435
BpmI	CTGGAG	3 cut(s)	26, 293, 320
Bpu14I	TTCGAA	1 cut(s)	480
BpuMI	CCSGG	2 cut(s)	380, 386
BsaBI	GATNNNNATC	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	79, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	2 cut(s)	310, 325
Bse3DI	GCAATG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	79, 255
BseGI	GGATG	1 cut(s)	472
BseJI	GATNNNNATC	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	310, 325
BseRI	GAGGAG	3 cut(s)	26, 29, 464
BseXI	GCAGC	1 cut(s)	163
BshFI	GGCC	2 cut(s)	200, 455
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	363
BsiSI	CCGG	4 cut(s)	197, 380, 386, 456
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	2 cut(s)	224, 360
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	2 cut(s)	200, 455
Bso31I	GGTCTC	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	363
Bsp119I	TTCGAA	1 cut(s)	480
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	3 cut(s)	134, 185, 284
BspACI	CCGC	4 cut(s)	154, 248, 304, 353
BspANI	GGCC	2 cut(s)	200, 455
BspHI	TCATGA	2 cut(s)	48, 424
BspLI	GGNNCC	5 cut(s)	85, 195, 308, 384, 390
BspT104I	TTCGAA	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	2 cut(s)	310, 325
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	79, 255
BssMI	GATC	3 cut(s)	134, 185, 284
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	4 cut(s)	35, 432, 441, 495
BstBI	TTCGAA	1 cut(s)	480
BstC8I	GCNNGC	2 cut(s)	252, 353
BstF5I	GGATG	1 cut(s)	472
BstKTI	GATC	3 cut(s)	137, 188, 287
BstMAI	GTCTC	2 cut(s)	224, 360
BstMBI	GATC	3 cut(s)	134, 185, 284
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	255, 378, 384
BstSFI	CTRYAG	2 cut(s)	181, 356
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	3 cut(s)	134, 185, 284
BstYI	RGATCY	3 cut(s)	134, 185, 284
BsuRI	GGCC	2 cut(s)	200, 455
BtsCI	GGATG	1 cut(s)	472
Cac8I	GCNNGC	2 cut(s)	252, 353
CciI	TCATGA	2 cut(s)	48, 424
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	382, 472
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	3 cut(s)	49, 295, 425
CviQI	GTAC	1 cut(s)	408
DpnI	GATC	3 cut(s)	136, 187, 286
DpnII	GATC	3 cut(s)	134, 185, 284
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	4 cut(s)	35, 432, 441, 495
EarI	CTCTTC	4 cut(s)	35, 432, 441, 495
Eco31I	GGTCTC	1 cut(s)	224
Eco47I	GGWCC	2 cut(s)	382, 472
Eco88I	CYCGRG	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	255
FaeI	CATG	3 cut(s)	52, 298, 428
FaiI	YATR	5 cut(s)	50, 167, 210, 296, 426
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	3 cut(s)	48, 294, 424
FauI	CCCGC	2 cut(s)	255, 360
Fnu4HI	GCNGC	2 cut(s)	152, 305
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	2 cut(s)	152, 305
FspBI	CTAG	1 cut(s)	511
GluI	GCNGC	2 cut(s)	152, 305
GsuI	CTGGAG	3 cut(s)	26, 293, 320
HaeIII	GGCC	2 cut(s)	200, 455
HapII	CCGG	4 cut(s)	197, 380, 386, 456
Hin1II	CATG	3 cut(s)	52, 298, 428
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	3 cut(s)	224, 344, 440
HpaI	GTTAAC	1 cut(s)	15
HpaII	CCGG	4 cut(s)	197, 380, 386, 456
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	229, 445
Hpy188III	TCNNGA	3 cut(s)	49, 191, 425
Hpy8I	GTNNAC	1 cut(s)	15
HpyAV	CCTTC	3 cut(s)	300, 325, 488
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
Hsp92II	CATG	3 cut(s)	52, 298, 428
KspAI	GTTAAC	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	134, 185, 284
LmnI	GCTCC	3 cut(s)	282, 301, 312
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	511
MalI	GATC	3 cut(s)	136, 187, 286
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	3 cut(s)	134, 185, 284
MboII	GAAGA	8 cut(s)	22, 55, 440, 449, 458, 500, 503, 512
MflI	RGATCY	3 cut(s)	134, 185, 284
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	2 cut(s)	205, 476
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	2 cut(s)	423, 444
MnlI	CCTC	9 cut(s)	38, 44, 47, 50, 89, 253, 442, 445, 463
MseI	TTAA	1 cut(s)	14
MslI	CAYNNNNRTG	1 cut(s)	423
MspA1I	CMGCKG	2 cut(s)	9, 154
MspI	CCGG	4 cut(s)	197, 380, 386, 456
MspR9I	CCNGG	3 cut(s)	257, 380, 386
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	304
NciI	CCSGG	2 cut(s)	380, 386
NdeII	GATC	3 cut(s)	134, 185, 284
NlaIII	CATG	3 cut(s)	52, 298, 428
NlaIV	GGNNCC	5 cut(s)	85, 195, 308, 384, 390
NmeAIII	GCCGAG	1 cut(s)	60
NspV	TTCGAA	1 cut(s)	480
PagI	TCATGA	2 cut(s)	48, 424
PfeI	GAWTC	2 cut(s)	224, 344
PfoI	TCCNGGA	1 cut(s)	378
PkrI	GCNGC	2 cut(s)	153, 306
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	5 cut(s)	85, 195, 308, 384, 390
PspPI	GGNCC	2 cut(s)	382, 472
PsuI	RGATCY	3 cut(s)	134, 185, 284
PvuII	CAGCTG	1 cut(s)	9
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	2 cut(s)	152, 305
Sau3AI	GATC	3 cut(s)	134, 185, 284
Sau96I	GGNCC	2 cut(s)	382, 472
ScaI	AGTACT	1 cut(s)	409
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	3 cut(s)	257, 380, 386
SduI	GDGCHC	1 cut(s)	420
SetI	ASST	5 cut(s)	11, 48, 264, 279, 499
SfaNI	GCATC	1 cut(s)	66
SfcI	CTRYAG	2 cut(s)	181, 356
SfuI	TTCGAA	1 cut(s)	480
SinI	GGWCC	2 cut(s)	382, 472
SmiMI	CAYNNNNRTG	1 cut(s)	423
Sse9I	AATT	2 cut(s)	205, 476
SsiI	CCGC	4 cut(s)	154, 248, 304, 353
SspMI	CTAG	1 cut(s)	511
StyD4I	CCNGG	3 cut(s)	255, 378, 384
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	480
TasI	AATT	2 cut(s)	205, 476
TatI	WGTACW	1 cut(s)	407
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	2 cut(s)	224, 344
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	5 cut(s)	17, 55, 225, 441, 450
VpaK11BI	GGWCC	2 cut(s)	382, 472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	50
XspI	CTAG	1 cut(s)	511
ZrmI	AGTACT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.