RLG00000010444

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008302
Physical Location & Seq
Reverse (-)
1676447 .. 1676980
534 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010444

Sequence Viewer

Length: 336 bp
ATGAAGAAGTCGGCCAGCGCGAAGTCCGCATTTGGTCATTTCGCGGCGGACGACATCGTGGAGAGCCGCCGGCCGGCGACCGTGAAGGAGAAGAAGACCAAGGCGGCGGAGGACGACACGGAGGTGGATGCGAAAGCCGATGACTTCATCAACAAATTCAAGCAGCAGCTGAAGCTGCAGAGGCTGGACTCGATCGTTAGGTACAAGGACATGATCAACAGAGGAAGCGACAAATATGCCCTTTATGTTAAGTGTTCTATTTACGGTTGGCATCCCTTCGTTATCGAGGGGTATATGGGTAATTTGGTCGTCGCTGTCGATCTATGTCTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

112

Amino Acids

12.57

Weight (kDa)

8.83

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 40 - 74 9.8e-18 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 20, 44
AciI CCGC 6 cut(s) 27, 44, 47, 67, 104, 107
AcoI YGGCCR 2 cut(s) 12, 71
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 1 cut(s) 160
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 2 cut(s) 169, 175
AluI AGCT 2 cut(s) 169, 175
AlwNI CAGNNNCTG 2 cut(s) 169, 184
AoxI GGCC 2 cut(s) 12, 71
ApeKI GCWGC 3 cut(s) 163, 166, 175
ApoI RAATTY 1 cut(s) 155
AspLEI GCGC 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 101
BbvI GCAGC 3 cut(s) 162, 175, 178
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BclI TGATCA 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 176
BisI GCNGC 6 cut(s) 45, 67, 105, 164, 167, 176
BlsI GCNGC 6 cut(s) 46, 68, 106, 165, 168, 177
BmsI GCATC 2 cut(s) 118, 280
BpiI GAAGAC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse118I RCCGGY 2 cut(s) 69, 73
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 2 cut(s) 133, 271
BseLI CCNNNNNNNGG 1 cut(s) 73
BseX3I CGGCCG 1 cut(s) 71
BseXI GCAGC 3 cut(s) 162, 175, 178
Bsh1236I CGCG 2 cut(s) 20, 44
Bsh1285I CGRYCG 3 cut(s) 74, 81, 195
BshFI GGCC 2 cut(s) 14, 73
BsiEI CGRYCG 3 cut(s) 74, 81, 195
BsiSI CCGG 2 cut(s) 70, 74
BslI CCNNNNNNNGG 1 cut(s) 73
BsnI GGCC 2 cut(s) 14, 73
Bsp143I GATC 3 cut(s) 192, 213, 319
BspACI CCGC 6 cut(s) 27, 44, 47, 67, 104, 107
BspANI GGCC 2 cut(s) 14, 73
BspFNI CGCG 2 cut(s) 20, 44
BspMAI CTGCAG 1 cut(s) 180
BsrFI RCCGGY 2 cut(s) 69, 73
BssAI RCCGGY 2 cut(s) 69, 73
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 3 cut(s) 192, 213, 319
BssT1I CCWWGG 1 cut(s) 99
Bst4CI ACNGT 2 cut(s) 82, 266
BstC8I GCNNGC 3 cut(s) 16, 71, 75
BstF5I GGATG 2 cut(s) 133, 271
BstFNI CGCG 2 cut(s) 20, 44
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 3 cut(s) 195, 216, 322
BstMBI GATC 3 cut(s) 192, 213, 319
BstMCI CGRYCG 3 cut(s) 74, 81, 195
BstMWI GCNNNNNNNGC 4 cut(s) 26, 172, 175, 181
BstSFI CTRYAG 1 cut(s) 176
BstUI CGCG 2 cut(s) 20, 44
BstV1I GCAGC 3 cut(s) 162, 175, 178
BstV2I GAAGAC 1 cut(s) 101
BstZI CGGCCG 1 cut(s) 71
BsuRI GGCC 2 cut(s) 14, 73
BtsCI GGATG 2 cut(s) 133, 271
Cac8I GCNNGC 3 cut(s) 16, 71, 75
CaiI CAGNNNCTG 2 cut(s) 169, 184
CfoI GCGC 1 cut(s) 20
Cfr10I RCCGGY 2 cut(s) 69, 73
Csp6I GTAC 1 cut(s) 202
CviAII CATG 1 cut(s) 211
CviJI RGCY 7 cut(s) 14, 66, 73, 137, 169, 175, 184
CviKI_1 RGCY 7 cut(s) 14, 66, 73, 137, 169, 175, 184
CviQI GTAC 1 cut(s) 202
DpnI GATC 3 cut(s) 194, 215, 321
DpnII GATC 3 cut(s) 192, 213, 319
EaeI YGGCCR 2 cut(s) 12, 71
EagI CGGCCG 1 cut(s) 71
EciI GGCGGA 2 cut(s) 62, 122
EclXI CGGCCG 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 99
Eco52I CGGCCG 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 1 cut(s) 214
FaiI YATR 6 cut(s) 212, 237, 246, 294, 296, 325
FatI CATG 1 cut(s) 210
FbaI TGATCA 1 cut(s) 213
Fnu4HI GCNGC 6 cut(s) 45, 67, 105, 164, 167, 176
FokI GGATG 2 cut(s) 140, 258
Fsp4HI GCNGC 6 cut(s) 45, 67, 105, 164, 167, 176
GlaI GCGC 1 cut(s) 19
GluI GCNGC 6 cut(s) 45, 67, 105, 164, 167, 176
HaeIII GGCC 2 cut(s) 14, 73
HapII CCGG 2 cut(s) 70, 74
HhaI GCGC 1 cut(s) 20
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 1 cut(s) 188
HpaII CCGG 2 cut(s) 70, 74
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 2 cut(s) 79, 286
HpyCH4III ACNGT 2 cut(s) 82, 266
HpyCH4V TGCA 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 172, 175, 181
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 1 cut(s) 18
KroI GCCGGC 2 cut(s) 69, 73
KroNI GCCGGC 2 cut(s) 71, 75
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 3 cut(s) 192, 213, 319
LpnPI CCDG 4 cut(s) 28, 83, 87, 170
Lsp1109I GCAGC 3 cut(s) 162, 175, 178
LweI GCATC 2 cut(s) 118, 280
MalI GATC 3 cut(s) 194, 215, 321
MboI GATC 3 cut(s) 192, 213, 319
MboII GAAGA 3 cut(s) 16, 103, 106
MluCI AATT 2 cut(s) 155, 301
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 5 cut(s) 103, 115, 174, 215, 280
MroNI GCCGGC 2 cut(s) 69, 73
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 2 cut(s) 70, 74
MvnI CGCG 2 cut(s) 20, 44
MwoI GCNNNNNNNGC 4 cut(s) 26, 172, 175, 181
NaeI GCCGGC 2 cut(s) 71, 75
NdeII GATC 3 cut(s) 192, 213, 319
NgoMIV GCCGGC 2 cut(s) 69, 73
NlaIII CATG 1 cut(s) 214
OliI CACNNNNGTG 1 cut(s) 122
PcsI WCGNNNNNNNCGW 3 cut(s) 17, 48, 315
PdiI GCCGGC 2 cut(s) 71, 75
PkrI GCNGC 6 cut(s) 46, 68, 106, 165, 168, 177
Ple19I CGATCG 1 cut(s) 195
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PstI CTGCAG 1 cut(s) 180
PstNI CAGNNNCTG 2 cut(s) 169, 184
PvuI CGATCG 1 cut(s) 195
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 6 cut(s) 45, 67, 105, 164, 167, 176
Sau3AI GATC 3 cut(s) 192, 213, 319
SchI GAGTC 1 cut(s) 182
SetI ASST 4 cut(s) 126, 171, 177, 203
SfaNI GCATC 2 cut(s) 118, 280
SfcI CTRYAG 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 122
Sse9I AATT 2 cut(s) 155, 301
SsiI CCGC 6 cut(s) 27, 44, 47, 67, 104, 107
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 2 cut(s) 82, 266
TaqI TCGA 3 cut(s) 191, 285, 318
TasI AATT 2 cut(s) 155, 301
TauI GCSGC 3 cut(s) 47, 69, 107
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseI GCWGC 3 cut(s) 163, 166, 175
TspDTI ATGAA 2 cut(s) 17, 136
TspGWI ACGGA 1 cut(s) 134
XapI RAATTY 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.