Rorug06G0384700

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000586
Physical Location & Seq
Forward (+)
53044119 .. 53047752
3634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0384700.1

Sequence Viewer

Length: 1614 bp
ATGTGTGAAATAATGCGTGCTCTGGTTCTTCTCTTCTTCGTTTGCTTCTGGCTGTACGATGTCACTCACAAACACAACTCGATCTCTGTGGCTTCACAGAGCACGGAGGAAGACACTGTCTTTGTCAATGGAACAGCTGCAATCGGAAGCATAGACGATGACTTTGTTTGTGCTACAATGGATTGGTGGCCGCCGGAGAAATGCGACTATGGAACTTGTAGCTGGGGCAATGCTTCTCTTCTTAATGACCTTGGCAACGATATACTTTTGAATGCAATAAAAGCATTTTCACCCTTGAAATTTAGGCTGGGCGGCACCTTACAAGACAAAGTCATATACCAGACAGAAGACAGTCCAAAACATCATACTTCATTTGTCAAAGATAGTTCACAGTTGTTTGGCTTCTCTGATGGTTACTTACCTATGCCTAGATGGGATGAACTGAACATTTTGTTCAAGAATGCTGGGGCTGTTGTTATATTTGGACTAAATGCACTGCAAGGCAGGACCATAGATTCCCATGGTGCTGCTGTGGGTGATTGGAATGCGAGTAATGCTGAATCTTTTATAAGATATACAGTCAACAAAGGATACACAATTCATGGTTGGGAGCTAGGAAATGAACTATGTGGGAGTGGAGTTGGAACAAGAGTCACAGCAGACCAATACGCTTCGGACATAAACTCTCTCCATAACAAGGTGCAAGATATTTATTCAGGTTCTGAATTAGCTAAGCCACTAGTCTTGGCACCAGGAGGGTTCTTTGATTCCAGTTGGTTCTCAGATTTTGTTGATAAAGCACCTCAGTCTGTTCAAGTACTCACACACCACATATACAACCTTGGTCCAGGTAGTGCCCCGGATCTTGTTGACAAGATCCTCGATCCATCTGTTCTTGATGGTATTTCCAAAACCTTCAGTGACCTACAAATGCTACTTAAGAATTCAAAAACTTCAGCAGTGGCATGGGTTGGTGAATCAGGAGGTGCTTACAACAGTGGTCACAATCTTGTTACAAATGCATTTGTATTCAGTTTCTGGTACCTGGACCAGCTTGGGATGGCAGCATCTTATGATACGAAAACATATTGCAGACAAACACTCATTGGTGGAAATTATGGCCTCCTTGACATCCAAACCTTTCAACCAAATCCTGATTATTACAGCGCTCTTCTTTGGCATCGTCTAATGGGAAACAATGTCCTGTCAACAAGCTTTTCCGGGACAAAGAAACTGCGCACTTACTCTCATTGTTCCAAGAAAACACAAGGAATCACAGTGCTGCTCATCAACTTAGACGGTAACACTACAGTTCAAGTAGATGTTTCAACTGAAAATGGTGGCAGCCGCAGTACTTTGAATTTGGAACAAGGCCTCAAGGATTCTAAAACAACCAAGAACGATGTAAGAGAAGAATACCACCTAACAGCTAAAGATGGGGACTTGCACAGCCGAGTTATGCTTCTAAATGGGAAAGAACTAACCGTAGATTCAGCAGGAAAAATCCCAAGTTTGGAGCCAGTGATAGTAGGGATGTCAGATCCCACCTCTGTGGCACCTTTCTCTATTGTATTTGTTCACATTCCCAACATAACTGTACCTGCTTGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

537

Amino Acids

58.81

Weight (kDa)

5.34

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_79n PF03662 39 - 353 1.5e-147 Glycosyl hydrolase family 79, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
Acc16I TGCGCA 1 cut(s) 1238
Acc36I ACCTGC 1 cut(s) 1609
Acc65I GGTACC 1 cut(s) 1041
AccB1I GGYRCC 4 cut(s) 314, 748, 1041, 1555
AciI CCGC 3 cut(s) 191, 312, 1348
AclWI GGATC 4 cut(s) 870, 871, 878, 1535
AcoI YGGCCR 1 cut(s) 188
AcsI RAATTY 3 cut(s) 299, 943, 1360
AcuI CTGAAG 2 cut(s) 901, 939
AfaI GTAC 5 cut(s) 56, 819, 1043, 1354, 1599
AfeI AGCGCT 1 cut(s) 1168
AfiI CCNNNNNNNGG 2 cut(s) 697, 1513
AflII CTTAAG 1 cut(s) 938
AgsI TTSAA 9 cut(s) 271, 298, 457, 815, 948, 1145, 1316, 1329, 1360
AhlI ACTAGT 1 cut(s) 739
AjnI CCWGG 3 cut(s) 751, 847, 1044
AleI CACNNNNGTG 1 cut(s) 1550
AluBI AGCT 7 cut(s) 137, 222, 613, 731, 1054, 1215, 1430
AluI AGCT 7 cut(s) 137, 222, 613, 731, 1054, 1215, 1430
Alw21I GWGCWC 2 cut(s) 22, 104
AlwI GGATC 4 cut(s) 870, 871, 878, 1535
AlwNI CAGNNNCTG 2 cut(s) 722, 1038
Aor51HI AGCGCT 1 cut(s) 1168
AoxI GGCC 3 cut(s) 188, 1120, 1372
ApeKI GCWGC 5 cut(s) 137, 527, 1064, 1282, 1344
ApoI RAATTY 3 cut(s) 299, 943, 1360
ArsI GACNNNNNNTTYG 4 cut(s) 104, 136, 146, 178
Asp718I GGTACC 1 cut(s) 1041
AspLEI GCGC 2 cut(s) 1169, 1239
AspS9I GGNCC 3 cut(s) 507, 845, 1048
AsuC2I CCSGG 2 cut(s) 860, 1222
AsuHPI GGTGA 3 cut(s) 282, 548, 986
AvaII GGWCC 3 cut(s) 507, 845, 1048
BaeGI GKGCMC 1 cut(s) 859
BanI GGYRCC 4 cut(s) 314, 748, 1041, 1555
BbsI GAAGAC 2 cut(s) 117, 354
Bbv12I GWGCWC 2 cut(s) 22, 104
BbvI GCAGC 5 cut(s) 124, 514, 1076, 1269, 1356
BccI CCATC 6 cut(s) 404, 426, 893, 895, 1054, 1430
BciT130I CCWGG 3 cut(s) 753, 849, 1046
BciVI GTATCC 1 cut(s) 584
BcnI CCSGG 2 cut(s) 860, 1222
BcuI ACTAGT 1 cut(s) 739
BfaI CTAG 3 cut(s) 429, 614, 740
BfmI CTRYAG 1 cut(s) 1308
BfoI RGCGCY 1 cut(s) 1170
BfrI CTTAAG 1 cut(s) 938
BfuAI ACCTGC 1 cut(s) 1609
BfuI GTATCC 1 cut(s) 584
BisI GCNGC 8 cut(s) 138, 191, 313, 528, 1065, 1283, 1345, 1348
BlpI GCTNAGC 1 cut(s) 732
BlsI GCNGC 8 cut(s) 139, 192, 314, 529, 1066, 1284, 1346, 1349
BmcAI AGTACT 2 cut(s) 819, 1354
Bme1390I CCNGG 5 cut(s) 753, 849, 860, 1046, 1222
Bme18I GGWCC 3 cut(s) 507, 845, 1048
BmgT120I GGNCC 3 cut(s) 507, 845, 1048
BmiI GGNNCC 5 cut(s) 316, 750, 1043, 1518, 1557
BmrFI CCNGG 5 cut(s) 753, 849, 860, 1046, 1222
BmsI GCATC 2 cut(s) 1076, 1189
BpiI GAAGAC 2 cut(s) 117, 354
Bpu1102I GCTNAGC 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 1361
BpuMI CCSGG 2 cut(s) 860, 1222
BsaJI CCNNGG 4 cut(s) 250, 520, 841, 858
Bsc4I CCNNNNNNNGG 2 cut(s) 697, 1513
Bse1I ACTGG 2 cut(s) 771, 1520
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 3 cut(s) 753, 849, 1046
BseDI CCNNGG 4 cut(s) 250, 520, 841, 858
BseGI GGATG 4 cut(s) 442, 1065, 1131, 1539
BseLI CCNNNNNNNGG 2 cut(s) 697, 1513
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 2 cut(s) 795, 818
BseNI ACTGG 2 cut(s) 771, 1520
BseSI GKGCMC 1 cut(s) 859
BseXI GCAGC 5 cut(s) 124, 514, 1076, 1269, 1356
BseYI CCCAGC 3 cut(s) 222, 307, 464
BshFI GGCC 3 cut(s) 190, 1122, 1374
BshNI GGYRCC 4 cut(s) 314, 748, 1041, 1555
BsiHKAI GWGCWC 2 cut(s) 22, 104
BsiSI CCGG 3 cut(s) 194, 860, 1221
BslFI GGGAC 2 cut(s) 1237, 1454
BslI CCNNNNNNNGG 2 cut(s) 697, 1513
BsmFI GGGAC 2 cut(s) 1237, 1454
BsmI GAATGC 3 cut(s) 277, 466, 550
BsnI GGCC 3 cut(s) 190, 1122, 1374
Bsp1286I GDGCHC 3 cut(s) 22, 104, 859
Bsp143I GATC 5 cut(s) 81, 862, 876, 883, 1540
Bsp1720I GCTNAGC 1 cut(s) 732
Bsp19I CCATGG 1 cut(s) 520
BspACI CCGC 3 cut(s) 191, 312, 1348
BspANI GGCC 3 cut(s) 190, 1122, 1374
BspCNI CTCAG 2 cut(s) 794, 817
BspLI GGNNCC 5 cut(s) 316, 750, 1043, 1518, 1557
BspMI ACCTGC 1 cut(s) 1609
BspPI GGATC 4 cut(s) 870, 871, 878, 1535
BspQI GCTCTTC 1 cut(s) 1176
BspT107I GGYRCC 4 cut(s) 314, 748, 1041, 1555
BspTI CTTAAG 1 cut(s) 938
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 2 cut(s) 771, 1520
BssECI CCNNGG 4 cut(s) 250, 520, 841, 858
BssMI GATC 5 cut(s) 81, 862, 876, 883, 1540
BssT1I CCWWGG 3 cut(s) 250, 520, 841
Bst2UI CCWGG 3 cut(s) 753, 849, 1046
Bst6I CTCTTC 3 cut(s) 38, 243, 1176
BstAFI CTTAAG 1 cut(s) 938
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 4 cut(s) 732, 781, 804, 1294
BstDSI CCRYGG 1 cut(s) 520
BstF5I GGATG 4 cut(s) 442, 1065, 1131, 1539
BstH2I RGCGCY 1 cut(s) 1170
BstHHI GCGC 2 cut(s) 1169, 1239
BstKTI GATC 5 cut(s) 84, 865, 879, 886, 1543
BstMBI GATC 5 cut(s) 81, 862, 876, 883, 1540
BstMWI GCNNNNNNNGC 2 cut(s) 281, 554
BstNI CCWGG 3 cut(s) 753, 849, 1046
BstSCI CCNGG 5 cut(s) 751, 847, 858, 1044, 1220
BstSFI CTRYAG 1 cut(s) 1308
BstSLI GKGCMC 1 cut(s) 859
BstV1I GCAGC 5 cut(s) 124, 514, 1076, 1269, 1356
BstV2I GAAGAC 2 cut(s) 117, 354
BstX2I RGATCY 3 cut(s) 862, 876, 1540
BstXI CCANNNNNNTGG 1 cut(s) 1552
BstYI RGATCY 3 cut(s) 862, 876, 1540
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 3 cut(s) 190, 1122, 1374
BtgI CCRYGG 1 cut(s) 520
BtsCI GGATG 4 cut(s) 442, 1065, 1131, 1539
BtsI GCAGTG 2 cut(s) 494, 966
BtsIMutI CAGTG 7 cut(s) 114, 494, 925, 966, 1003, 1284, 1527
BveI ACCTGC 1 cut(s) 1609
Cac8I GCNNGC 1 cut(s) 18
CaiI CAGNNNCTG 2 cut(s) 722, 1038
CfoI GCGC 2 cut(s) 1169, 1239
Cfr13I GGNCC 3 cut(s) 507, 845, 1048
Csp6I GTAC 5 cut(s) 55, 818, 1042, 1353, 1598
CspCI CAANNNNNGTGG 2 cut(s) 726, 761
CviAII CATG 3 cut(s) 521, 602, 966
CviQI GTAC 5 cut(s) 55, 818, 1042, 1353, 1598
DdeI CTNAG 4 cut(s) 732, 781, 804, 1294
DpnI GATC 5 cut(s) 83, 864, 878, 885, 1542
DpnII GATC 5 cut(s) 81, 862, 876, 883, 1540
EaeI YGGCCR 1 cut(s) 188
Eam1104I CTCTTC 3 cut(s) 38, 243, 1176
EarI CTCTTC 3 cut(s) 38, 243, 1176
Eco130I CCWWGG 3 cut(s) 250, 520, 841
Eco147I AGGCCT 1 cut(s) 1374
Eco47I GGWCC 3 cut(s) 507, 845, 1048
Eco47III AGCGCT 1 cut(s) 1168
Eco57I CTGAAG 2 cut(s) 901, 939
EcoRI GAATTC 1 cut(s) 943
EcoRII CCWGG 3 cut(s) 751, 847, 1044
EcoT14I CCWWGG 3 cut(s) 250, 520, 841
EcoT22I ATGCAT 1 cut(s) 1024
ErhI CCWWGG 3 cut(s) 250, 520, 841
FaeI CATG 3 cut(s) 524, 605, 969
FaqI GGGAC 2 cut(s) 1237, 1454
FatI CATG 3 cut(s) 520, 601, 965
Fnu4HI GCNGC 8 cut(s) 138, 191, 313, 528, 1065, 1283, 1345, 1348
FokI GGATG 4 cut(s) 449, 1072, 1118, 1546
Fsp4HI GCNGC 8 cut(s) 138, 191, 313, 528, 1065, 1283, 1345, 1348
FspBI CTAG 3 cut(s) 429, 614, 740
FspI TGCGCA 1 cut(s) 1238
GlaI GCGC 2 cut(s) 1168, 1238
GluI GCNGC 8 cut(s) 138, 191, 313, 528, 1065, 1283, 1345, 1348
GsaI CCCAGC 3 cut(s) 226, 311, 468
HaeII RGCGCY 1 cut(s) 1170
HaeIII GGCC 3 cut(s) 190, 1122, 1374
HapII CCGG 3 cut(s) 194, 860, 1221
HhaI GCGC 2 cut(s) 1169, 1239
Hin1II CATG 3 cut(s) 524, 605, 969
Hin6I GCGC 2 cut(s) 1167, 1237
HinP1I GCGC 2 cut(s) 1167, 1237
HincII GTYRAC 3 cut(s) 583, 871, 1209
HindII GTYRAC 3 cut(s) 583, 871, 1209
HindIII AAGCTT 1 cut(s) 1213
HinfI GANTC 8 cut(s) 515, 560, 651, 767, 977, 1272, 1382, 1490
HpaII CCGG 3 cut(s) 194, 860, 1221
HphI GGTGA 3 cut(s) 282, 548, 986
Hpy166II GTNNAC 5 cut(s) 389, 583, 871, 1209, 1579
Hpy188I TCNGA 6 cut(s) 146, 409, 676, 724, 784, 1540
Hpy188III TCNNGA 4 cut(s) 457, 896, 981, 1154
Hpy8I GTNNAC 5 cut(s) 389, 583, 871, 1209, 1579
HpyAV CCTTC 1 cut(s) 925
HpyCH4V TGCA 8 cut(s) 140, 275, 494, 499, 703, 1022, 1092, 1447
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 554
HpyF3I CTNAG 4 cut(s) 732, 781, 804, 1294
Hsp92II CATG 3 cut(s) 524, 605, 969
HspAI GCGC 2 cut(s) 1167, 1237
KpnI GGTACC 1 cut(s) 1045
Kzo9I GATC 5 cut(s) 81, 862, 876, 883, 1540
LguI GCTCTTC 1 cut(s) 1176
LmnI GCTCC 2 cut(s) 610, 1516
Lsp1109I GCAGC 5 cut(s) 124, 514, 1076, 1269, 1356
LweI GCATC 2 cut(s) 1076, 1189
MaeI CTAG 3 cut(s) 429, 614, 740
MaeIII GTNAC 7 cut(s) 61, 413, 652, 920, 1001, 1012, 1301
MalI GATC 5 cut(s) 83, 864, 878, 885, 1542
MboI GATC 5 cut(s) 81, 862, 876, 883, 1540
MboII GAAGA 8 cut(s) 20, 25, 28, 122, 230, 359, 1163, 1424
MflI RGATCY 3 cut(s) 862, 876, 1540
MhlI GDGCHC 3 cut(s) 22, 104, 859
MluCI AATT 6 cut(s) 299, 597, 725, 943, 1114, 1360
MlyI GAGTC 1 cut(s) 660
MmeI TCCRAC 1 cut(s) 622
MnlI CCTC 8 cut(s) 100, 749, 813, 890, 977, 1133, 1385, 1558
Mph1103I ATGCAT 1 cut(s) 1024
MseI TTAA 2 cut(s) 243, 939
MslI CAYNNNNRTG 1 cut(s) 1550
MspA1I CMGCKG 1 cut(s) 137
MspCI CTTAAG 1 cut(s) 938
MspI CCGG 3 cut(s) 194, 860, 1221
MspR9I CCNGG 5 cut(s) 753, 849, 860, 1046, 1222
Mva1269I GAATGC 3 cut(s) 277, 466, 550
MvaI CCWGG 3 cut(s) 753, 849, 1046
MwoI GCNNNNNNNGC 2 cut(s) 281, 554
NciI CCSGG 2 cut(s) 860, 1222
NcoI CCATGG 1 cut(s) 520
NdeII GATC 5 cut(s) 81, 862, 876, 883, 1540
NlaIII CATG 3 cut(s) 524, 605, 969
NlaIV GGNNCC 5 cut(s) 316, 750, 1043, 1518, 1557
NmeAIII GCCGAG 1 cut(s) 1478
NmuCI GTSAC 4 cut(s) 61, 652, 920, 1001
NsbI TGCGCA 1 cut(s) 1238
NsiI ATGCAT 1 cut(s) 1024
OliI CACNNNNGTG 1 cut(s) 1550
PceI AGGCCT 1 cut(s) 1374
PciSI GCTCTTC 1 cut(s) 1176
PctI GAATGC 3 cut(s) 277, 466, 550
PfeI GAWTC 7 cut(s) 515, 560, 767, 977, 1272, 1382, 1490
PflFI GACNNNGTC 2 cut(s) 116, 329
PfoI TCCNGGA 1 cut(s) 1220
PkrI GCNGC 8 cut(s) 139, 192, 314, 529, 1066, 1284, 1346, 1349
PleI GAGTC 1 cut(s) 659
PpsI GAGTC 1 cut(s) 659
PsiI TTATAA 1 cut(s) 569
Psp6I CCWGG 3 cut(s) 751, 847, 1044
PspFI CCCAGC 3 cut(s) 222, 307, 464
PspGI CCWGG 3 cut(s) 751, 847, 1044
PspN4I GGNNCC 5 cut(s) 316, 750, 1043, 1518, 1557
PspPI GGNCC 3 cut(s) 507, 845, 1048
PstNI CAGNNNCTG 2 cut(s) 722, 1038
PsuI RGATCY 3 cut(s) 862, 876, 1540
PsyI GACNNNGTC 2 cut(s) 116, 329
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 5 cut(s) 56, 819, 1043, 1354, 1599
RsaNI GTAC 5 cut(s) 55, 818, 1042, 1353, 1598
RseI CAYNNNNRTG 1 cut(s) 1550
SapI GCTCTTC 1 cut(s) 1176
SaqAI TTAA 2 cut(s) 243, 939
SatI GCNGC 8 cut(s) 138, 191, 313, 528, 1065, 1283, 1345, 1348
Sau3AI GATC 5 cut(s) 81, 862, 876, 883, 1540
Sau96I GGNCC 3 cut(s) 507, 845, 1048
ScaI AGTACT 2 cut(s) 819, 1354
SchI GAGTC 1 cut(s) 660
ScrFI CCNGG 5 cut(s) 753, 849, 860, 1046, 1222
SduI GDGCHC 3 cut(s) 22, 104, 859
SfaNI GCATC 2 cut(s) 1076, 1189
SfcI CTRYAG 1 cut(s) 1308
SinI GGWCC 3 cut(s) 507, 845, 1048
SmiMI CAYNNNNRTG 1 cut(s) 1550
SmlI CTYRAG 2 cut(s) 938, 1376
SmoI CTYRAG 2 cut(s) 938, 1376
SpeI ACTAGT 1 cut(s) 739
Sse9I AATT 6 cut(s) 299, 597, 725, 943, 1114, 1360
SseBI AGGCCT 1 cut(s) 1374
SsiI CCGC 3 cut(s) 191, 312, 1348
SspMI CTAG 3 cut(s) 429, 614, 740
StuI AGGCCT 1 cut(s) 1374
StyD4I CCNGG 5 cut(s) 751, 847, 858, 1044, 1220
StyI CCWWGG 3 cut(s) 250, 520, 841
TaqI TCGA 2 cut(s) 80, 882
TasI AATT 6 cut(s) 299, 597, 725, 943, 1114, 1360
TatI WGTACW 2 cut(s) 817, 1352
TauI GCSGC 3 cut(s) 193, 315, 1350
TfiI GAWTC 7 cut(s) 515, 560, 767, 977, 1272, 1382, 1490
Tru1I TTAA 2 cut(s) 243, 939
Tru9I TTAA 2 cut(s) 243, 939
TscAI CASTG 7 cut(s) 121, 501, 925, 966, 1003, 1284, 1527
TseFI GTSAC 4 cut(s) 61, 652, 920, 1001
TseI GCWGC 5 cut(s) 137, 527, 1064, 1282, 1344
Tsp45I GTSAC 4 cut(s) 61, 652, 920, 1001
TspDTI ATGAA 4 cut(s) 360, 453, 590, 636
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 7 cut(s) 121, 501, 925, 966, 1003, 1284, 1527
Tth111I GACNNNGTC 2 cut(s) 116, 329
Vha464I CTTAAG 1 cut(s) 938
VpaK11BI GGWCC 3 cut(s) 507, 845, 1048
XapI RAATTY 3 cut(s) 299, 943, 1360
XspI CTAG 3 cut(s) 429, 614, 740
ZrmI AGTACT 2 cut(s) 819, 1354
Zsp2I ATGCAT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.