Rh5CG129400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000586
Physical Location & Seq
Forward (+)
10754063 .. 10756062
2000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG129400.1

Sequence Viewer

Length: 1389 bp
ATGAGCGTATCCTCTCATGGAACCACCCCTGGACGAAAGAGGATCTCCCGACACTGGACGGAGCTTCCTGATAATGCTACCGCATCGATACTCTCACGGCTGGGAGCGATCGAGATCCTGGAGAGCGCTCAGAAAGTATGCATGAAATGGCGCAAAGTCTGCAAGGACCCTCTCATCTGGCGCAAGATTGACATGCGCAACGATGGCGATCTCGAAGACATAAACTACCACTTGGAGGAGATGTGCCGCCACGCCGTTAATCGGAGCTCTGGTAATCTGGTCGATATTAACATTGAGCACTTCGGCACCGATGAGCTGCTTGAGTATATCACTGATAGCTCGAGTGGAATCAGACGTCTCCGACTGTTGTGTTGTGATGACATATCAGATGCGGGATTGAGTAAAGTGGCTTTAAAACTTCCATTGTTGGAGGAACTTGACATTTCTCTATGCGATAATATCTCGCATGAAGCTGTAGAAGTGCTTGGCCGCTCTTGCCCCTTTTTGAAATCATTCAAGTTCAACAAAGAGTGGTGTCAGTTTTCACAAGACGGCCGCTGGCCATACGAGTTTCATTTCAGTGATTATTATTCACGTATTCTTGATGCTTACCGAAAAAGAAATCAAGTACCCTTTCATTGGAATGTGGATTATGATGCAGAGGCACTTGCTATAGCAGGAACCATGCATGGTTTACGACACCTCCAGCTTTTTGGGAATAAGTTGACAGATGATGGCTTGTCAAGCATTCTTGATTGTTGTCCTGATCTTGTCTCACTTGACCTGCGCCATTGTTTCATTCTCAATATGGAGGGAGATTGGAGAAGTACATGTGCTGAACGAATTAAGAAATTGTGGCTTCCCCATGATTCCACTGAGAGCAAAGAATTTGTAGCTAGATCTGAAGCTTATTGTTTTAAATGGACAGAACTCCCAGACAAAGTTACGGCATCAATACTGTCAAGGCTTGGAGGGATTGACATCCTCACTTCCGCTCAGAAGGTCTGCTCCAAGTGGTTCAAAATATGGAAGGACCCTCTGATGTGGTGCACCATTGACATGCGCAATAATTTTGATTTTGACGACTACAAGCCCTTCTTCTTCCATGAGTTGTGTGAACATGCCATTGAGCGTAGCTGTGGTAATCTGGTTGACATCAATGTTGAGAACTTTGGCACTAATGAGCTCCTTAAATATTATATCGCTGAGAGGTATTTCATCATCACCTATCTGAGATCATTTGTTAGTACTACACATTTCAACATGATTTCATTTTTCTTGACGTACAGTTGTTGTAGGTATCTTAAACGATCTCCATTAAATGGTGTCTTTTATGAGTGGATTATTATCAATAAGGTGGTGTCTTTGAGAGTGAAAGAGACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

462

Amino Acids

53.84

Weight (kDa)

6.13

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 19 - 65 5.7e-08 F-box-like
F-box PF00646 19 - 62 9.6e-06 F-box domain
F-box-like PF12937 308 - 354 3e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 358
Acc16I TGCGCA 2 cut(s) 197, 1064
Acc36I ACCTGC 1 cut(s) 792
AccB1I GGYRCC 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 1322
AccBSI CCGCTC 2 cut(s) 492, 995
AciI CCGC 6 cut(s) 81, 247, 392, 490, 556, 993
AclWI GGATC 2 cut(s) 50, 109
AcoI YGGCCR 3 cut(s) 487, 553, 560
AcsI RAATTY 1 cut(s) 887
AcuI CTGAAG 1 cut(s) 924
AcyI GRCGYC 1 cut(s) 355
AfaI GTAC 4 cut(s) 630, 829, 1249, 1286
AfeI AGCGCT 1 cut(s) 127
AfiI CCNNNNNNNGG 5 cut(s) 54, 235, 261, 639, 1322
AflIII ACRYGT 1 cut(s) 830
AgsI TTSAA 5 cut(s) 508, 517, 523, 1021, 1261
AjnI CCWGG 2 cut(s) 28, 117
Alw21I GWGCWC 4 cut(s) 269, 300, 1052, 1188
Alw26I GTCTC 3 cut(s) 362, 778, 1373
Alw44I GTGCAC 1 cut(s) 1048
AlwI GGATC 2 cut(s) 50, 109
Ama87I CYCGRG 1 cut(s) 340
Aor51HI AGCGCT 1 cut(s) 127
AoxI GGCC 3 cut(s) 487, 553, 560
ApaLI GTGCAC 1 cut(s) 1048
ApeKI GCWGC 1 cut(s) 316
ApoI RAATTY 1 cut(s) 887
Asp700I GAANNNNTTC 1 cut(s) 512
AspLEI GCGC 6 cut(s) 128, 153, 183, 198, 789, 1065
AspS9I GGNCC 2 cut(s) 166, 1033
AsuHPI GGTGA 1 cut(s) 1216
AvaI CYCGRG 1 cut(s) 340
AvaII GGWCC 2 cut(s) 166, 1033
BaeGI GKGCMC 1 cut(s) 1052
BalI TGGCCA 1 cut(s) 562
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 2 cut(s) 269, 1188
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 4 cut(s) 269, 300, 1052, 1188
BbvI GCAGC 1 cut(s) 303
BccI CCATC 2 cut(s) 197, 728
BceAI ACGGC 4 cut(s) 113, 239, 568, 963
BciT130I CCWGG 2 cut(s) 30, 119
BciVI GTATCC 1 cut(s) 19
BcoDI GTCTC 3 cut(s) 362, 778, 1373
BfaI CTAG 1 cut(s) 897
BfmI CTRYAG 2 cut(s) 474, 672
BfoI RGCGCY 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 792
BfuI GTATCC 1 cut(s) 19
BglII AGATCT 1 cut(s) 899
BisI GCNGC 4 cut(s) 247, 317, 490, 556
BlsI GCNGC 4 cut(s) 248, 318, 491, 557
BmcAI AGTACT 1 cut(s) 1249
Bme1390I CCNGG 2 cut(s) 30, 119
Bme18I GGWCC 2 cut(s) 166, 1033
BmeT110I CYCGRG 1 cut(s) 340
BmgT120I GGNCC 2 cut(s) 166, 1033
BmiI GGNNCC 5 cut(s) 22, 168, 307, 682, 1035
BmrFI CCNGG 2 cut(s) 30, 119
BmsI GCATC 5 cut(s) 92, 379, 595, 646, 959
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 2 cut(s) 140, 689
BpuEI CTTGAG 1 cut(s) 341
Bsa29I ATCGAT 1 cut(s) 86
BsaAI YACGTR 1 cut(s) 596
BsaBI GATNNNNATC 4 cut(s) 113, 207, 980, 1346
BsaHI GRCGYC 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 28
BsaXI ACNNNNNCTCC 6 cut(s) 227, 256, 257, 286, 687, 717
Bsc4I CCNNNNNNNGG 5 cut(s) 54, 235, 261, 639, 1322
Bse1I ACTGG 1 cut(s) 59
Bse8I GATNNNNATC 4 cut(s) 113, 207, 980, 1346
BseBI CCWGG 2 cut(s) 30, 119
BseCI ATCGAT 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 981
BseJI GATNNNNATC 4 cut(s) 113, 207, 980, 1346
BseLI CCNNNNNNNGG 5 cut(s) 54, 235, 261, 639, 1322
BseMII CTCAG 5 cut(s) 143, 867, 1010, 1197, 1223
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 251
BseSI GKGCMC 1 cut(s) 1052
BseX3I CGGCCG 1 cut(s) 553
BseXI GCAGC 1 cut(s) 303
BseYI CCCAGC 1 cut(s) 100
Bsh1285I CGRYCG 2 cut(s) 111, 556
BshFI GGCC 3 cut(s) 489, 555, 562
BshNI GGYRCC 1 cut(s) 305
BshVI ATCGAT 1 cut(s) 86
BsiEI CGRYCG 2 cut(s) 111, 556
BsiHKAI GWGCWC 4 cut(s) 269, 300, 1052, 1188
BsiHKCI CYCGRG 1 cut(s) 340
BslI CCNNNNNNNGG 5 cut(s) 54, 235, 261, 639, 1322
BsmAI GTCTC 3 cut(s) 362, 778, 1373
BsmBI CGTCTC 1 cut(s) 362
BsmI GAATGC 1 cut(s) 747
BsnI GGCC 3 cut(s) 489, 555, 562
BsoBI CYCGRG 1 cut(s) 340
Bsp1286I GDGCHC 4 cut(s) 269, 300, 1052, 1188
Bsp143I GATC 8 cut(s) 42, 108, 114, 208, 766, 899, 1235, 1310
BspACI CCGC 6 cut(s) 81, 247, 392, 490, 556, 993
BspANI GGCC 3 cut(s) 489, 555, 562
BspCNI CTCAG 5 cut(s) 142, 868, 1009, 1198, 1224
BspDI ATCGAT 1 cut(s) 86
BspLI GGNNCC 5 cut(s) 22, 168, 307, 682, 1035
BspMI ACCTGC 1 cut(s) 792
BspPI GGATC 2 cut(s) 50, 109
BspT107I GGYRCC 1 cut(s) 305
BsrBI CCGCTC 2 cut(s) 492, 995
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 8 cut(s) 42, 108, 114, 208, 766, 899, 1235, 1310
BssNI GRCGYC 1 cut(s) 355
Bst2UI CCWGG 2 cut(s) 30, 119
Bst4CI ACNGT 4 cut(s) 366, 960, 1289, 1384
BstACI GRCGYC 1 cut(s) 355
BstAPI GCANNNNNTGC 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 596
BstC8I GCNNGC 1 cut(s) 560
BstDEI CTNAG 5 cut(s) 129, 876, 996, 1206, 1232
BstF5I GGATG 1 cut(s) 981
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 6 cut(s) 128, 153, 183, 198, 789, 1065
BstKTI GATC 8 cut(s) 45, 111, 117, 211, 769, 902, 1238, 1313
BstMAI GTCTC 3 cut(s) 362, 778, 1373
BstMBI GATC 8 cut(s) 42, 108, 114, 208, 766, 899, 1235, 1310
BstMCI CGRYCG 2 cut(s) 111, 556
BstMWI GCNNNNNNNGC 4 cut(s) 159, 204, 495, 744
BstNI CCWGG 2 cut(s) 30, 119
BstNSI RCATGY 4 cut(s) 196, 834, 1063, 1124
BstSCI CCNGG 2 cut(s) 28, 117
BstSFI CTRYAG 2 cut(s) 474, 672
BstSLI GKGCMC 1 cut(s) 1052
BstV1I GCAGC 1 cut(s) 303
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 3 cut(s) 42, 114, 899
BstXI CCANNNNNNTGG 1 cut(s) 713
BstYI RGATCY 3 cut(s) 42, 114, 899
BstZI CGGCCG 1 cut(s) 553
Bsu15I ATCGAT 1 cut(s) 86
BsuI GTATCC 1 cut(s) 19
BsuRI GGCC 3 cut(s) 489, 555, 562
BsuTUI ATCGAT 1 cut(s) 86
BtsCI GGATG 1 cut(s) 981
BtsIMutI CAGTG 4 cut(s) 52, 330, 586, 873
BveI ACCTGC 1 cut(s) 792
Cac8I GCNNGC 1 cut(s) 560
CfoI GCGC 6 cut(s) 128, 153, 183, 198, 789, 1065
Cfr13I GGNCC 2 cut(s) 166, 1033
ClaI ATCGAT 1 cut(s) 86
Csp6I GTAC 4 cut(s) 629, 828, 1248, 1285
CviQI GTAC 4 cut(s) 629, 828, 1248, 1285
DdeI CTNAG 5 cut(s) 129, 876, 996, 1206, 1232
DpnI GATC 8 cut(s) 44, 110, 116, 210, 768, 901, 1237, 1312
DpnII GATC 8 cut(s) 42, 108, 114, 208, 766, 899, 1235, 1310
DraI TTTAAA 2 cut(s) 414, 919
EaeI YGGCCR 3 cut(s) 487, 553, 560
EagI CGGCCG 1 cut(s) 553
Ecl136II GAGCTC 2 cut(s) 267, 1186
EclXI CGGCCG 1 cut(s) 553
Eco24I GRGCYC 2 cut(s) 269, 1188
Eco47I GGWCC 2 cut(s) 166, 1033
Eco47III AGCGCT 1 cut(s) 127
Eco52I CGGCCG 1 cut(s) 553
Eco53kI GAGCTC 2 cut(s) 267, 1186
Eco57I CTGAAG 1 cut(s) 924
Eco88I CYCGRG 1 cut(s) 340
EcoICRI GAGCTC 2 cut(s) 267, 1186
EcoO109I RGGNCCY 2 cut(s) 166, 1033
EcoRII CCWGG 2 cut(s) 28, 117
EcoT22I ATGCAT 2 cut(s) 143, 690
EcoT38I GRGCYC 2 cut(s) 269, 1188
Esp3I CGTCTC 1 cut(s) 362
FalI AAGNNNNNCTT 2 cut(s) 1082, 1114
FauI CCCGC 1 cut(s) 385
Fnu4HI GCNGC 4 cut(s) 247, 317, 490, 556
FokI GGATG 1 cut(s) 968
FriOI GRGCYC 2 cut(s) 269, 1188
Fsp4HI GCNGC 4 cut(s) 247, 317, 490, 556
FspBI CTAG 1 cut(s) 897
FspI TGCGCA 2 cut(s) 197, 1064
GlaI GCGC 6 cut(s) 127, 152, 182, 197, 788, 1064
GluI GCNGC 4 cut(s) 247, 317, 490, 556
GsaI CCCAGC 1 cut(s) 104
GsuI CTGGAG 2 cut(s) 140, 689
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 3 cut(s) 489, 555, 562
HhaI GCGC 6 cut(s) 128, 153, 183, 198, 789, 1065
Hin1I GRCGYC 1 cut(s) 355
Hin6I GCGC 6 cut(s) 126, 151, 181, 196, 787, 1063
HinP1I GCGC 6 cut(s) 126, 151, 181, 196, 787, 1063
HincII GTYRAC 2 cut(s) 726, 1153
HindII GTYRAC 2 cut(s) 726, 1153
HindIII AAGCTT 1 cut(s) 906
HinfI GANTC 2 cut(s) 348, 869
HphI GGTGA 1 cut(s) 1216
Hpy166II GTNNAC 5 cut(s) 695, 726, 1050, 1118, 1153
Hpy188I TCNGA 9 cut(s) 132, 264, 353, 362, 388, 904, 999, 1041, 1233
Hpy188III TCNNGA 8 cut(s) 48, 68, 112, 212, 602, 752, 764, 1279
Hpy8I GTNNAC 5 cut(s) 695, 726, 1050, 1118, 1153
HpyAV CCTTC 3 cut(s) 994, 1024, 1105
HpyCH4III ACNGT 4 cut(s) 366, 960, 1289, 1384
HpyCH4IV ACGT 3 cut(s) 355, 595, 1283
HpyCH4V TGCA 5 cut(s) 141, 162, 659, 688, 1050
HpyF10VI GCNNNNNNNGC 4 cut(s) 159, 204, 495, 744
HpyF3I CTNAG 5 cut(s) 129, 876, 996, 1206, 1232
HpySE526I ACGT 3 cut(s) 355, 595, 1283
Hsp92I GRCGYC 1 cut(s) 355
HspAI GCGC 6 cut(s) 126, 151, 181, 196, 787, 1063
Kzo9I GATC 8 cut(s) 42, 108, 114, 208, 766, 899, 1235, 1310
LmnI GCTCC 5 cut(s) 61, 104, 264, 1013, 1191
Lsp1109I GCAGC 1 cut(s) 303
LweI GCATC 5 cut(s) 92, 379, 595, 646, 959
MaeI CTAG 1 cut(s) 897
MaeII ACGT 3 cut(s) 355, 595, 1283
MaeIII GTNAC 1 cut(s) 943
MalI GATC 8 cut(s) 44, 110, 116, 210, 768, 901, 1237, 1312
MbiI CCGCTC 2 cut(s) 492, 995
MboI GATC 8 cut(s) 42, 108, 114, 208, 766, 899, 1235, 1310
MboII GAAGA 3 cut(s) 227, 1090, 1093
MflI RGATCY 3 cut(s) 42, 114, 899
MhlI GDGCHC 4 cut(s) 269, 300, 1052, 1188
MlsI TGGCCA 1 cut(s) 562
MluCI AATT 4 cut(s) 843, 851, 887, 1069
MluNI TGGCCA 1 cut(s) 562
MmeI TCCRAC 2 cut(s) 385, 408
Mox20I TGGCCA 1 cut(s) 562
Mph1103I ATGCAT 2 cut(s) 143, 690
MroXI GAANNNNTTC 1 cut(s) 512
MscI TGGCCA 1 cut(s) 562
MseI TTAA 8 cut(s) 258, 288, 413, 846, 918, 1191, 1305, 1319
MslI CAYNNNNRTG 3 cut(s) 579, 642, 1058
Msp20I TGGCCA 1 cut(s) 562
MspA1I CMGCKG 1 cut(s) 558
MspR9I CCNGG 2 cut(s) 30, 119
Mva1269I GAATGC 1 cut(s) 747
MvaI CCWGG 2 cut(s) 30, 119
MwoI GCNNNNNNNGC 4 cut(s) 159, 204, 495, 744
NdeII GATC 8 cut(s) 42, 108, 114, 208, 766, 899, 1235, 1310
NlaIV GGNNCC 5 cut(s) 22, 168, 307, 682, 1035
NsbI TGCGCA 2 cut(s) 197, 1064
NsiI ATGCAT 2 cut(s) 143, 690
NspI RCATGY 4 cut(s) 196, 834, 1063, 1124
PaeR7I CTCGAG 1 cut(s) 340
PciI ACATGT 1 cut(s) 830
PctI GAATGC 1 cut(s) 747
PdmI GAANNNNTTC 1 cut(s) 512
PfeI GAWTC 2 cut(s) 348, 869
PflMI CCANNNNNTGG 1 cut(s) 1322
PfoI TCCNGGA 1 cut(s) 117
PkrI GCNGC 4 cut(s) 248, 318, 491, 557
Ple19I CGATCG 1 cut(s) 111
Ppu21I YACGTR 1 cut(s) 596
PpuMI RGGWCCY 2 cut(s) 166, 1033
PscI ACATGT 1 cut(s) 830
Psp124BI GAGCTC 2 cut(s) 269, 1188
Psp5II RGGWCCY 2 cut(s) 166, 1033
Psp6I CCWGG 2 cut(s) 28, 117
PspFI CCCAGC 1 cut(s) 100
PspGI CCWGG 2 cut(s) 28, 117
PspN4I GGNNCC 5 cut(s) 22, 168, 307, 682, 1035
PspPI GGNCC 2 cut(s) 166, 1033
PspPPI RGGWCCY 2 cut(s) 166, 1033
PspXI VCTCGAGB 1 cut(s) 340
PsuI RGATCY 3 cut(s) 42, 114, 899
PvuI CGATCG 1 cut(s) 111
RsaI GTAC 4 cut(s) 630, 829, 1249, 1286
RsaNI GTAC 4 cut(s) 629, 828, 1248, 1285
RseI CAYNNNNRTG 3 cut(s) 579, 642, 1058
SacI GAGCTC 2 cut(s) 269, 1188
SaqAI TTAA 8 cut(s) 258, 288, 413, 846, 918, 1191, 1305, 1319
SatI GCNGC 4 cut(s) 247, 317, 490, 556
Sau3AI GATC 8 cut(s) 42, 108, 114, 208, 766, 899, 1235, 1310
Sau96I GGNCC 2 cut(s) 166, 1033
ScaI AGTACT 1 cut(s) 1249
ScrFI CCNGG 2 cut(s) 30, 119
SduI GDGCHC 4 cut(s) 269, 300, 1052, 1188
SfaNI GCATC 5 cut(s) 92, 379, 595, 646, 959
SfcI CTRYAG 2 cut(s) 474, 672
Sfr274I CTCGAG 1 cut(s) 340
SinI GGWCC 2 cut(s) 166, 1033
SlaI CTCGAG 1 cut(s) 340
SmiMI CAYNNNNRTG 3 cut(s) 579, 642, 1058
SmlI CTYRAG 2 cut(s) 320, 340
SmoI CTYRAG 2 cut(s) 320, 340
Sse9I AATT 4 cut(s) 843, 851, 887, 1069
SsiI CCGC 6 cut(s) 81, 247, 392, 490, 556, 993
SspI AATATT 1 cut(s) 1196
SspMI CTAG 1 cut(s) 897
SstI GAGCTC 2 cut(s) 269, 1188
StyD4I CCNGG 2 cut(s) 28, 117
TaaI ACNGT 4 cut(s) 366, 960, 1289, 1384
TaiI ACGT 3 cut(s) 358, 598, 1286
TaqI TCGA 5 cut(s) 86, 111, 213, 282, 341
TasI AATT 4 cut(s) 843, 851, 887, 1069
TatI WGTACW 2 cut(s) 827, 1247
TauI GCSGC 3 cut(s) 249, 492, 558
TfiI GAWTC 2 cut(s) 348, 869
Tru1I TTAA 8 cut(s) 258, 288, 413, 846, 918, 1191, 1305, 1319
Tru9I TTAA 8 cut(s) 258, 288, 413, 846, 918, 1191, 1305, 1319
TscAI CASTG 4 cut(s) 59, 337, 586, 880
TseI GCWGC 1 cut(s) 316
TspDTI ATGAA 7 cut(s) 158, 483, 563, 626, 787, 1207, 1260
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 4 cut(s) 59, 337, 586, 880
Van91I CCANNNNNTGG 1 cut(s) 1322
VneI GTGCAC 1 cut(s) 1048
VpaK11BI GGWCC 2 cut(s) 166, 1033
XapI RAATTY 1 cut(s) 887
XceI RCATGY 4 cut(s) 196, 834, 1063, 1124
XhoI CTCGAG 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 512
XspI CTAG 1 cut(s) 897
ZraI GACGTC 1 cut(s) 356
ZrmI AGTACT 1 cut(s) 1249
Zsp2I ATGCAT 2 cut(s) 143, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.