RchiOBHm_Chr6g0310961

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
68110577 .. 68110762
186 bp
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UTR
Exon/CDS
Intron
PRQ27963

Sequence Viewer

Length: 186 bp
ATGGTAACATTTGCTATAGCAGGAACGATGCACGGGTTACACCACCTCATGCTTCTTGGGAATGAAATGACTAATGAAGGGTTGTGTGCAATTCTTGATGGTTGTCCTCATCTTGAGTCTCTTGATTTGCGACAGTGTTTGAATCTGACATTGGAGGGAAATATGGGTAGAAGATGCGTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

61

Amino Acids

6.69

Weight (kDa)

5.37

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 142
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
Alw26I GTCTC 1 cut(s) 123
BccI CCATC 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 15
BmsI GCATC 2 cut(s) 18, 164
BpuEI CTTGAG 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 135
BstMAI GTCTC 1 cut(s) 123
BstSFI CTRYAG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 140
CseI GACGC 1 cut(s) 166
CviAII CATG 1 cut(s) 49
FaeI CATG 1 cut(s) 52
FaiI YATR 3 cut(s) 17, 50, 164
FatI CATG 1 cut(s) 48
HgaI GACGC 1 cut(s) 166
Hin1II CATG 1 cut(s) 52
HinfI GANTC 2 cut(s) 116, 142
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 3 cut(s) 95, 113, 122
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 31, 89
Hsp92II CATG 1 cut(s) 52
LpnPI CCDG 1 cut(s) 6
LweI GCATC 2 cut(s) 18, 164
MaeIII GTNAC 2 cut(s) 4, 36
MboII GAAGA 1 cut(s) 183
MluCI AATT 1 cut(s) 90
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 3 cut(s) 56, 117, 148
NlaIII CATG 1 cut(s) 52
PfeI GAWTC 1 cut(s) 142
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
SchI GAGTC 1 cut(s) 125
SetI ASST 1 cut(s) 48
SfaNI GCATC 2 cut(s) 18, 164
SfcI CTRYAG 1 cut(s) 15
SgeI CNNG 8 cut(s) 33, 44, 46, 61, 68, 107, 125, 134
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 1 cut(s) 90
TaaI ACNGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 180
TasI AATT 1 cut(s) 90
TfiI GAWTC 1 cut(s) 142
TscAI CASTG 1 cut(s) 140
TspDTI ATGAA 2 cut(s) 78, 90
TspRI CASTG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.