Rh6DG501200

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000586
Physical Location & Seq
Reverse (-)
65717656 .. 65718656
1001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG501200.1

Sequence Viewer

Length: 339 bp
ATGTGGCGCACCATCGACATGAGAAATGATGGTGATCTCCAAGCCATGGACTACGACTTGGAGGTTATGTGCCGTCACGACTTGCAAGAACAACACTTCGGCACCGATCGGTTGCTTCATTACATCACTGATAGTTCAAGGGGGATCAGACGCCTCCGACTATTGTGTTGCAATAGCATATCAGATGAGGGATTGGGAAAAGTGGCTCAGAAACTTCCATTGTTGGAGGAACTTGACATTTCTCTATGCGACGATTACAATGGAGTTGCATTTGCTATAGCAGGAACAATGGGTGGTTTACGCCACCTCCAGCTTTTCGGGAATAAGTTGACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

112

Amino Acids

12.77

Weight (kDa)

5.45

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 46
AclWI GGATC 1 cut(s) 152
AcyI GRCGYC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 138
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
AlwI GGATC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 44
BanI GGYRCC 1 cut(s) 101
BccI CCATC 2 cut(s) 20, 23
BceAI ACGGC 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 293
BsaBI GATNNNNATC 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 45
BsaXI ACNNNNNCTCC 4 cut(s) 53, 83, 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse8I GATNNNNATC 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 45
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 221
Bsh1285I CGRYCG 1 cut(s) 109
BshNI GGYRCC 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 46
Bsp143I GATC 3 cut(s) 34, 106, 144
Bsp19I CCATGG 1 cut(s) 45
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 103
BspPI GGATC 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 3 cut(s) 34, 106, 144
BssNI GRCGYC 1 cut(s) 151
BssT1I CCWWGG 1 cut(s) 45
BstACI GRCGYC 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 207
BstDSI CCRYGG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 3 cut(s) 37, 109, 147
BstMBI GATC 3 cut(s) 34, 106, 144
BstMCI CGRYCG 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 126
CfoI GCGC 1 cut(s) 9
CseI GACGC 1 cut(s) 159
CviAII CATG 2 cut(s) 19, 46
CviJI RGCY 3 cut(s) 44, 206, 313
CviKI_1 RGCY 3 cut(s) 44, 206, 313
DdeI CTNAG 1 cut(s) 207
DpnI GATC 3 cut(s) 36, 108, 146
DpnII GATC 3 cut(s) 34, 106, 144
Eco130I CCWWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 2 cut(s) 22, 49
FaiI YATR 6 cut(s) 20, 47, 68, 179, 247, 278
FatI CATG 2 cut(s) 18, 45
GlaI GCGC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 293
HgaI GACGC 1 cut(s) 159
HhaI GCGC 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 2 cut(s) 22, 49
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 2 cut(s) 299, 330
Hpy188I TCNGA 4 cut(s) 149, 158, 184, 210
Hpy188III TCNNGA 2 cut(s) 77, 319
Hpy8I GTNNAC 2 cut(s) 299, 330
Hpy99I CGWCG 1 cut(s) 254
HpyCH4V TGCA 3 cut(s) 85, 171, 269
HpyF3I CTNAG 1 cut(s) 207
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 2 cut(s) 22, 49
HspAI GCGC 1 cut(s) 7
Kzo9I GATC 3 cut(s) 34, 106, 144
LpnPI CCDG 2 cut(s) 267, 323
MaeIII GTNAC 1 cut(s) 74
MalI GATC 3 cut(s) 36, 108, 146
MboI GATC 3 cut(s) 34, 106, 144
MmeI TCCRAC 2 cut(s) 181, 204
MnlI CCTC 5 cut(s) 55, 164, 181, 220, 317
MslI CAYNNNNRTG 1 cut(s) 17
NcoI CCATGG 1 cut(s) 45
NdeII GATC 3 cut(s) 34, 106, 144
NlaIII CATG 2 cut(s) 22, 49
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 74
PflMI CCANNNNNTGG 1 cut(s) 46
Ple19I CGATCG 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 103
PvuI CGATCG 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 17
Sau3AI GATC 3 cut(s) 34, 106, 144
SetI ASST 3 cut(s) 66, 309, 315
SfcI CTRYAG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 17
StyI CCWWGG 1 cut(s) 45
TaqI TCGA 1 cut(s) 15
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 107
TspRI CASTG 1 cut(s) 133
Van91I CCANNNNNTGG 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.