Rorug05G0025700

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000586
Physical Location & Seq
Reverse (-)
1647049 .. 1648193
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0025700.1

Sequence Viewer

Length: 486 bp
ATGGTCTTCGTGGCGAGAATAAAAGGTTTGGAATCCTCGTCGCGGGATGGGATGCAGAGTTACAACTACGACATGTCCACCGACGATGGTACTAAGTTGGCGCTAGAAGCATTATTTAATGCAACCGTCCATGATAGGTTCAGTGGTGGACTTTTGCGAGGCAGAAAGGTAGCCCATTGTGTAGCCCATCGTGTATTGAAGGAGCAGCATTGTGTAGCCAATGGTGTATTGGAGGAGCAGCGGTTATCCTTCCACCGCCTTATATTCAACTCTGGAGTTGAGGCTTCAAATGCATATGCACTCACAGCTACTCATGGTGAAACTGATTCTCAACTTGTAGAAAAGTTTCCGAATCAATTATTGTTGAAAACTGCGTTTCAAAAAAAATTGTTGTTGAAAACTGTGGAGCAAAGTGTTGAACTCTATTTGAATCGGAGCTCAAAAGATTTGCTCGAGTTCATACGCACCCAATTTGATGGACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

161

Amino Acids

18.1

Weight (kDa)

7.83

Isoelectric Point (pI)

30.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 43
AciI CCGC 3 cut(s) 43, 241, 256
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 42
AflIII ACRYGT 1 cut(s) 72
AgsI TTSAA 8 cut(s) 199, 268, 288, 367, 380, 397, 419, 430
AluBI AGCT 2 cut(s) 308, 438
AluI AGCT 2 cut(s) 308, 438
Alw21I GWGCWC 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 452
ApeKI GCWGC 2 cut(s) 205, 238
Asp700I GAANNNNTTC 1 cut(s) 345
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 1 cut(s) 479
AsuHPI GGTGA 1 cut(s) 329
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 440
Bbv12I GWGCWC 1 cut(s) 440
BbvI GCAGC 2 cut(s) 217, 250
BccI CCATC 4 cut(s) 41, 80, 195, 470
BfaI CTAG 1 cut(s) 104
BfoI RGCGCY 1 cut(s) 104
BisI GCNGC 2 cut(s) 206, 239
BlsI GCNGC 2 cut(s) 207, 240
Bme18I GGWCC 1 cut(s) 479
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 1 cut(s) 481
BmsI GCATC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 294
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 42
BseGI GGATG 2 cut(s) 52, 57
BseLI CCNNNNNNNGG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 2 cut(s) 217, 250
Bsh1236I CGCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 440
BsiHKCI CYCGRG 1 cut(s) 452
BslI CCNNNNNNNGG 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 1 cut(s) 440
BspACI CCGC 3 cut(s) 43, 241, 256
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 481
Bst4CI ACNGT 2 cut(s) 127, 403
BstDEI CTNAG 1 cut(s) 93
BstF5I GGATG 2 cut(s) 52, 57
BstFNI CGCG 1 cut(s) 43
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstMWI GCNNNNNNNGC 3 cut(s) 107, 290, 305
BstNSI RCATGY 1 cut(s) 76
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 2 cut(s) 217, 250
BstXI CCANNNNNNTGG 1 cut(s) 476
BtsCI GGATG 2 cut(s) 52, 57
BtsIMutI CAGTG 1 cut(s) 148
CfoI GCGC 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 479
Csp6I GTAC 1 cut(s) 90
CviAII CATG 3 cut(s) 73, 131, 314
CviJI RGCY 6 cut(s) 173, 185, 218, 284, 308, 438
CviKI_1 RGCY 6 cut(s) 173, 185, 218, 284, 308, 438
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 440
Eco47I GGWCC 1 cut(s) 479
Eco53kI GAGCTC 1 cut(s) 438
Eco88I CYCGRG 1 cut(s) 452
EcoICRI GAGCTC 1 cut(s) 438
EcoT22I ATGCAT 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 440
FaeI CATG 3 cut(s) 76, 134, 317
FaiI YATR 7 cut(s) 74, 132, 263, 295, 297, 315, 461
FatI CATG 3 cut(s) 72, 130, 313
FauI CCCGC 1 cut(s) 36
FauNDI CATATG 1 cut(s) 295
Fnu4HI GCNGC 2 cut(s) 206, 239
FokI GGATG 2 cut(s) 59, 64
FriOI GRGCYC 1 cut(s) 440
Fsp4HI GCNGC 2 cut(s) 206, 239
FspBI CTAG 1 cut(s) 104
GlaI GCGC 1 cut(s) 102
GluI GCNGC 2 cut(s) 206, 239
GsuI CTGGAG 1 cut(s) 294
HaeII RGCGCY 1 cut(s) 104
HhaI GCGC 1 cut(s) 103
Hin1II CATG 3 cut(s) 76, 134, 317
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HinfI GANTC 4 cut(s) 32, 326, 352, 430
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 78, 149
Hpy188I TCNGA 2 cut(s) 351, 435
Hpy188III TCNNGA 1 cut(s) 273
Hpy8I GTNNAC 2 cut(s) 78, 149
Hpy99I CGWCG 2 cut(s) 43, 86
HpyAV CCTTC 2 cut(s) 193, 259
HpyCH4III ACNGT 2 cut(s) 127, 403
HpyCH4V TGCA 4 cut(s) 55, 122, 293, 299
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 290, 305
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 3 cut(s) 76, 134, 317
HspAI GCGC 1 cut(s) 101
LmnI GCTCC 4 cut(s) 202, 235, 406, 435
LpnPI CCDG 1 cut(s) 258
Lsp1109I GCAGC 2 cut(s) 217, 250
LweI GCATC 1 cut(s) 42
MaeI CTAG 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 440
MluCI AATT 3 cut(s) 356, 386, 470
MnlI CCTC 4 cut(s) 46, 152, 226, 274
Mph1103I ATGCAT 1 cut(s) 295
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 241
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 3 cut(s) 107, 290, 305
NdeI CATATG 1 cut(s) 295
NlaIII CATG 3 cut(s) 76, 134, 317
NlaIV GGNNCC 1 cut(s) 481
NsiI ATGCAT 1 cut(s) 295
NspI RCATGY 1 cut(s) 76
PaeR7I CTCGAG 1 cut(s) 452
PciI ACATGT 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 4 cut(s) 32, 326, 352, 430
PkrI GCNGC 2 cut(s) 207, 240
PscI ACATGT 1 cut(s) 72
Psp124BI GAGCTC 1 cut(s) 440
PspN4I GGNNCC 1 cut(s) 481
PspPI GGNCC 1 cut(s) 479
PspXI VCTCGAGB 1 cut(s) 452
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SacI GAGCTC 1 cut(s) 440
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 2 cut(s) 206, 239
Sau96I GGNCC 1 cut(s) 479
SduI GDGCHC 1 cut(s) 440
SetI ASST 5 cut(s) 28, 140, 171, 310, 440
SfaNI GCATC 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 452
SinI GGWCC 1 cut(s) 479
SlaI CTCGAG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 3 cut(s) 356, 386, 470
SsiI CCGC 3 cut(s) 43, 241, 256
SspMI CTAG 1 cut(s) 104
SstI GAGCTC 1 cut(s) 440
TaaI ACNGT 2 cut(s) 127, 403
TaqI TCGA 1 cut(s) 453
TasI AATT 3 cut(s) 356, 386, 470
TfiI GAWTC 4 cut(s) 32, 326, 352, 430
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 1 cut(s) 148
TseI GCWGC 2 cut(s) 205, 238
TspDTI ATGAA 1 cut(s) 448
TspRI CASTG 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 479
XceI RCATGY 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XhoI CTCGAG 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 1 cut(s) 104
Zsp2I ATGCAT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.