FvH4_3g09561

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000586
Physical Location & Seq
Forward (+)
5575096 .. 5575926
831 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09561.t1

Sequence Viewer

Length: 528 bp
ATGCAGTGCTGTTCAACTGGAATCAGACGCCTGCGACTAGTATGTTCCTATGGCATATCAGATGAGGGATTGATTGAAGTTGCATCAAAACTTCCCCAGTTAGAGGATCTTGACATCACATATTGCAGAAATCTATCACATAGACCAGTGGAAGTGCTTGGGCGCTCTTGCCCTCTTTTGAGATCATTCAAATTAAATAAAGAATGGCGCAAATATTCAGACAACTCTTTGGATGAGATTATTGATGATGAAGGTCGGAGGAGTAAAGATGACGAGGCACTTGCTATAGCAGGGACGATGCATGGTTTAAACCACCTGCAGCTTTTCCAGAATCAGTTAACCAATGATGGGTTAAAGGCAATTCTTGATGGTTGTCCTCATCTTGAGTTGCTTGATCTTCGCTCTTGTTTCAATCTTAATCTGGAGGGAGATTTGGGCAGAAGATGCACTGAAAAAATTAAAAGACTGTTCCTTCCGGGAGATTTGATTCCTGGAACTTCTACTGATTGGCCTCCCGGATCCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

176

Amino Acids

19.7

Weight (kDa)

5.58

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 324
Acc36I ACCTGC 1 cut(s) 324
AclWI GGATC 3 cut(s) 114, 513, 526
AcyI GRCGYC 1 cut(s) 28
AfiI CCNNNNNNNGG 2 cut(s) 103, 348
AgsI TTSAA 4 cut(s) 15, 77, 190, 412
AhlI ACTAGT 1 cut(s) 37
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 1 cut(s) 322
AluI AGCT 1 cut(s) 322
AlwI GGATC 3 cut(s) 114, 513, 526
AoxI GGCC 1 cut(s) 509
ApeKI GCWGC 1 cut(s) 319
AspLEI GCGC 2 cut(s) 165, 210
AsuC2I CCSGG 2 cut(s) 477, 516
BamHI GGATCC 1 cut(s) 518
BbvI GCAGC 1 cut(s) 331
BccI CCATC 2 cut(s) 341, 362
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciT130I CCWGG 1 cut(s) 492
BcnI CCSGG 2 cut(s) 477, 516
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 2 cut(s) 285, 317
BfoI RGCGCY 1 cut(s) 166
BfuAI ACCTGC 1 cut(s) 324
BisI GCNGC 1 cut(s) 320
BlsI GCNGC 1 cut(s) 321
Bme1390I CCNGG 3 cut(s) 477, 492, 516
BmiI GGNNCC 1 cut(s) 520
BmrFI CCNGG 3 cut(s) 477, 492, 516
BmrI ACTGGG 1 cut(s) 91
BmsI GCATC 3 cut(s) 92, 288, 434
BmuI ACTGGG 1 cut(s) 91
BpmI CTGGAG 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 2 cut(s) 477, 516
BsaHI GRCGYC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 348
Bse1I ACTGG 3 cut(s) 22, 97, 146
BseBI CCWGG 1 cut(s) 492
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 2 cut(s) 103, 348
BseNI ACTGG 3 cut(s) 22, 97, 146
BseRI GAGGAG 1 cut(s) 274
BseXI GCAGC 1 cut(s) 331
BshFI GGCC 1 cut(s) 511
BsiSI CCGG 2 cut(s) 476, 516
BslFI GGGAC 1 cut(s) 307
BslI CCNNNNNNNGG 2 cut(s) 103, 348
BsmFI GGGAC 1 cut(s) 307
BsnI GGCC 1 cut(s) 511
Bsp143I GATC 4 cut(s) 106, 182, 394, 518
BspANI GGCC 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 520
BspMAI CTGCAG 1 cut(s) 321
BspMI ACCTGC 1 cut(s) 324
BspPI GGATC 3 cut(s) 114, 513, 526
BsrI ACTGG 3 cut(s) 22, 97, 146
BssMI GATC 4 cut(s) 106, 182, 394, 518
BssNI GRCGYC 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 468
BstACI GRCGYC 1 cut(s) 28
BstAPI GCANNNNNTGC 1 cut(s) 444
BstC8I GCNNGC 1 cut(s) 32
BstF5I GGATG 1 cut(s) 238
BstH2I RGCGCY 1 cut(s) 166
BstHHI GCGC 2 cut(s) 165, 210
BstKTI GATC 4 cut(s) 109, 185, 397, 521
BstMBI GATC 4 cut(s) 106, 182, 394, 518
BstMWI GCNNNNNNNGC 1 cut(s) 444
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 3 cut(s) 475, 490, 514
BstSFI CTRYAG 2 cut(s) 285, 317
BstV1I GCAGC 1 cut(s) 331
BstX2I RGATCY 2 cut(s) 106, 518
BstYI RGATCY 2 cut(s) 106, 518
BsuRI GGCC 1 cut(s) 511
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 3 cut(s) 11, 153, 447
BveI ACCTGC 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 32
CfoI GCGC 2 cut(s) 165, 210
CseI GACGC 1 cut(s) 36
CviAII CATG 1 cut(s) 302
CviJI RGCY 2 cut(s) 322, 511
CviKI_1 RGCY 2 cut(s) 322, 511
DpnI GATC 4 cut(s) 108, 184, 396, 520
DpnII GATC 4 cut(s) 106, 182, 394, 518
DraI TTTAAA 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 490
EcoT22I ATGCAT 1 cut(s) 303
FaeI CATG 1 cut(s) 305
FaiI YATR 7 cut(s) 43, 51, 56, 121, 141, 287, 303
FaqI GGGAC 1 cut(s) 307
FatI CATG 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 320
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 320
FspBI CTAG 1 cut(s) 38
GlaI GCGC 2 cut(s) 164, 209
GluI GCNGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 443
HaeII RGCGCY 1 cut(s) 166
HaeIII GGCC 1 cut(s) 511
HapII CCGG 2 cut(s) 476, 516
HgaI GACGC 1 cut(s) 36
HhaI GCGC 2 cut(s) 165, 210
Hin1I GRCGYC 1 cut(s) 28
Hin1II CATG 1 cut(s) 305
Hin6I GCGC 2 cut(s) 163, 208
HinP1I GCGC 2 cut(s) 163, 208
HincII GTYRAC 1 cut(s) 339
HindII GTYRAC 1 cut(s) 339
HinfI GANTC 3 cut(s) 21, 331, 487
HpaI GTTAAC 1 cut(s) 339
HpaII CCGG 2 cut(s) 476, 516
Hpy166II GTNNAC 1 cut(s) 339
Hpy188I TCNGA 4 cut(s) 26, 61, 220, 258
Hpy188III TCNNGA 5 cut(s) 110, 328, 365, 383, 422
Hpy8I GTNNAC 1 cut(s) 339
HpyAV CCTTC 2 cut(s) 245, 482
HpyCH4III ACNGT 1 cut(s) 468
HpyCH4V TGCA 6 cut(s) 4, 83, 126, 301, 319, 447
HpyF10VI GCNNNNNNNGC 1 cut(s) 444
Hsp92I GRCGYC 1 cut(s) 28
Hsp92II CATG 1 cut(s) 305
HspAI GCGC 2 cut(s) 163, 208
KspAI GTTAAC 1 cut(s) 339
Kzo9I GATC 4 cut(s) 106, 182, 394, 518
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 3 cut(s) 92, 288, 434
MaeI CTAG 1 cut(s) 38
MalI GATC 4 cut(s) 108, 184, 396, 520
MboI GATC 4 cut(s) 106, 182, 394, 518
MboII GAAGA 2 cut(s) 389, 453
MflI RGATCY 2 cut(s) 106, 518
MluCI AATT 3 cut(s) 191, 360, 456
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 8 cut(s) 58, 97, 183, 252, 268, 387, 418, 522
Mph1103I ATGCAT 1 cut(s) 303
MseI TTAA 6 cut(s) 194, 308, 338, 353, 417, 459
MspI CCGG 2 cut(s) 476, 516
MspR9I CCNGG 3 cut(s) 477, 492, 516
MssI GTTTAAAC 1 cut(s) 309
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 1 cut(s) 444
NciI CCSGG 2 cut(s) 477, 516
NdeII GATC 4 cut(s) 106, 182, 394, 518
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 1 cut(s) 520
NsiI ATGCAT 1 cut(s) 303
PaqCI CACCTGC 1 cut(s) 324
PfeI GAWTC 3 cut(s) 21, 331, 487
PfoI TCCNGGA 3 cut(s) 475, 490, 514
PkrI GCNGC 1 cut(s) 321
PmeI GTTTAAAC 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 1 cut(s) 520
PstI CTGCAG 1 cut(s) 321
PsuI RGATCY 2 cut(s) 106, 518
SaqAI TTAA 6 cut(s) 194, 308, 338, 353, 417, 459
SatI GCNGC 1 cut(s) 320
Sau3AI GATC 4 cut(s) 106, 182, 394, 518
ScrFI CCNGG 3 cut(s) 477, 492, 516
SetI ASST 4 cut(s) 256, 318, 324, 527
SfaNI GCATC 3 cut(s) 92, 288, 434
SfcI CTRYAG 2 cut(s) 285, 317
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 3 cut(s) 191, 360, 456
SspI AATATT 1 cut(s) 215
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 3 cut(s) 475, 490, 514
TaaI ACNGT 1 cut(s) 468
TasI AATT 3 cut(s) 191, 360, 456
TfiI GAWTC 3 cut(s) 21, 331, 487
Tru1I TTAA 6 cut(s) 194, 308, 338, 353, 417, 459
Tru9I TTAA 6 cut(s) 194, 308, 338, 353, 417, 459
TscAI CASTG 2 cut(s) 153, 454
TseI GCWGC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 264
TspRI CASTG 2 cut(s) 153, 454
XspI CTAG 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.